Wall clock time and date at job start Tue Mar 31 2020 11:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47256 * 2 1 4 4 N 1.46906 * 109.47378 * 182.00305 * 3 2 1 5 5 C 1.46899 * 110.99875 * 287.04183 * 4 3 2 6 6 C 1.50699 * 109.47379 * 76.26632 * 5 4 3 7 7 H 1.07995 * 120.00232 * 4.85579 * 6 5 4 8 8 C 1.37877 * 120.00139 * 184.85700 * 6 5 4 9 9 N 1.31512 * 119.99914 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00233 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47389 * 89.99858 * 10 8 6 12 12 H 1.48501 * 109.47605 * 210.00215 * 10 8 6 13 13 H 1.48507 * 109.47028 * 330.00069 * 10 8 6 14 14 C 1.46898 * 111.00321 * 163.08567 * 4 3 2 15 15 H 1.09009 * 110.36546 * 312.16806 * 14 4 3 16 16 C 1.54560 * 110.42507 * 189.86017 * 14 4 3 17 17 C 1.54374 * 105.09267 * 241.12578 * 16 14 4 18 18 H 1.08997 * 110.51504 * 94.98762 * 17 16 14 19 19 C 1.53004 * 110.40992 * 217.37880 * 17 16 14 20 20 N 1.48562 * 104.59269 * 336.15239 * 17 16 14 21 21 C 1.46907 * 110.99636 * 159.04239 * 20 17 16 22 22 C 1.50697 * 109.47080 * 314.45586 * 21 20 17 23 23 C 1.38228 * 120.00011 * 269.72850 * 22 21 20 24 24 C 1.38242 * 120.00215 * 179.77167 * 23 22 21 25 25 C 1.38240 * 119.99246 * 0.47858 * 24 23 22 26 26 C 1.38227 * 120.00277 * 359.79903 * 25 24 23 27 27 C 1.38238 * 120.00487 * 359.94734 * 26 25 24 28 28 C 1.48554 * 104.21814 * 39.48748 * 20 17 16 29 29 H 1.08999 * 109.47106 * 59.99803 * 1 2 3 30 30 H 1.09002 * 109.47363 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46609 * 299.99909 * 1 2 3 32 32 H 1.08999 * 109.47310 * 239.99654 * 2 1 3 33 33 H 1.08999 * 109.47106 * 120.00197 * 2 1 3 34 34 H 1.08999 * 109.47081 * 62.00631 * 3 2 1 35 35 H 1.08996 * 109.47124 * 302.00370 * 3 2 1 36 36 H 1.09002 * 109.47374 * 196.26690 * 5 4 3 37 37 H 1.09004 * 109.47325 * 316.26158 * 5 4 3 38 38 H 0.97001 * 119.99998 * 179.97438 * 9 8 6 39 39 H 1.09000 * 110.30116 * 122.21939 * 16 14 4 40 40 H 1.09011 * 110.40099 * 0.07901 * 16 14 4 41 41 H 1.08998 * 109.47402 * 176.62504 * 19 17 16 42 42 H 1.09004 * 109.47108 * 296.62230 * 19 17 16 43 43 H 1.08999 * 109.47500 * 56.62186 * 19 17 16 44 44 H 1.09003 * 109.46756 * 74.45979 * 21 20 17 45 45 H 1.08999 * 109.46770 * 194.45342 * 21 20 17 46 46 H 1.08004 * 120.00464 * 359.97438 * 23 22 21 47 47 H 1.07991 * 120.00380 * 180.24927 * 24 23 22 48 48 H 1.08004 * 119.99475 * 179.76894 * 25 24 23 49 49 H 1.08002 * 120.00381 * 179.97438 * 26 25 24 50 50 H 1.07991 * 120.00441 * 180.02562 * 27 26 25 51 51 H 1.09000 * 110.41199 * 79.29847 * 28 20 17 52 52 H 1.09000 * 110.41153 * 201.61653 * 28 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5083 1.4428 -0.0484 5 6 4.0775 1.0257 1.2400 6 6 3.9477 -0.4685 1.3864 7 1 3.5605 -1.0596 0.5697 8 6 4.3233 -1.0811 2.5632 9 7 4.7953 -0.3615 3.5576 10 14 4.1618 -2.9332 2.7450 11 1 5.4171 -3.5862 2.2944 12 1 3.9118 -3.2709 4.1693 13 1 3.0279 -3.4149 1.9158 14 6 4.0216 2.7595 -0.4492 15 1 3.4878 3.1236 -1.3272 16 6 5.5385 2.6828 -0.7353 17 6 6.1882 3.6475 0.2798 18 1 6.5166 3.1049 1.1662 19 6 7.3670 4.3825 -0.3617 20 7 5.1083 4.6060 0.6294 21 6 5.3846 5.2650 1.9129 22 6 5.8280 4.2361 2.9207 23 6 4.8935 3.6015 3.7174 24 6 5.2996 2.6542 4.6387 25 6 6.6415 2.3487 4.7699 26 6 7.5765 2.9874 3.9771 27 6 7.1698 3.9309 3.0523 28 6 3.8871 3.7644 0.7149 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.7063 1.9458 0.9074 35 1 1.6476 1.9665 -0.8714 36 1 5.1305 1.3045 1.2793 37 1 3.5409 1.5183 2.0509 38 1 5.0592 -0.7924 4.3856 39 1 5.7481 3.0080 -1.7543 40 1 5.9037 1.6675 -0.5799 41 1 7.7762 5.1017 0.3477 42 1 8.1385 3.6627 -0.6352 43 1 7.0260 4.9065 -1.2545 44 1 6.1731 6.0056 1.7787 45 1 4.4804 5.7577 2.2703 46 1 3.8456 3.8434 3.6180 47 1 4.5692 2.1555 5.2583 48 1 6.9592 1.6113 5.4922 49 1 8.6249 2.7491 4.0799 50 1 7.9003 4.4296 2.4327 51 1 3.8539 3.2387 1.6692 52 1 2.9941 4.3763 0.5877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171763731.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:36 Heat of formation + Delta-G solvation = 26.246791 kcal Electronic energy + Delta-G solvation = -29166.025651 eV Core-core repulsion = 25743.795833 eV Total energy + Delta-G solvation = -3422.229817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43195 -39.53188 -37.71998 -34.56070 -34.43471 -33.27487 -31.93164 -31.30686 -30.21900 -28.92557 -26.92271 -26.25615 -25.38251 -23.95122 -23.30998 -22.46835 -21.84227 -20.53338 -20.31935 -18.47784 -17.58251 -17.32248 -16.69428 -16.39218 -16.05819 -15.91210 -15.85846 -15.51460 -15.15097 -14.86821 -14.37688 -14.34048 -14.00527 -13.87888 -13.72264 -13.51322 -13.36584 -13.20119 -12.96793 -12.89858 -12.64534 -12.59501 -12.49272 -12.40432 -12.27586 -12.05897 -11.97686 -11.88979 -11.75669 -11.66909 -11.43895 -11.24499 -11.10480 -10.94385 -10.36107 -9.64200 -9.44336 -9.36499 -8.86946 -7.99075 -6.02822 0.57583 0.67266 1.39983 1.42726 1.50462 2.46558 2.95707 3.12487 3.28290 3.46839 3.79785 3.82387 4.01303 4.05226 4.20279 4.23338 4.28349 4.33108 4.37968 4.41662 4.47126 4.58064 4.64841 4.68344 4.72704 4.77481 4.80435 4.83245 4.84821 4.90896 4.99011 5.01573 5.07858 5.11735 5.18370 5.23557 5.24646 5.28920 5.30793 5.38214 5.46855 5.49680 5.55256 5.66094 5.72171 5.81102 5.83354 5.83918 5.96032 6.11752 6.25590 6.28808 6.54052 6.82704 7.05235 7.58588 9.05594 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010447 B = 0.006589 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.486098 B = 4248.199998 C = 5759.424681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.078 3.922 4 N -0.541 5.541 5 C 0.235 3.765 6 C -0.517 4.517 7 H 0.061 0.939 8 C 0.017 3.983 9 N -0.894 5.894 10 Si 0.938 3.062 11 H -0.284 1.284 12 H -0.289 1.289 13 H -0.272 1.272 14 C 0.081 3.919 15 H 0.090 0.910 16 C -0.107 4.107 17 C 0.049 3.951 18 H 0.048 0.952 19 C -0.124 4.124 20 N -0.484 5.484 21 C 0.084 3.916 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.085 4.085 25 C -0.113 4.113 26 C -0.130 4.130 27 C -0.115 4.115 28 C -0.011 4.011 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.007 0.993 35 H 0.072 0.928 36 H -0.001 1.001 37 H -0.034 1.034 38 H 0.254 0.746 39 H 0.084 0.916 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.102 0.898 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.114 0.886 49 H 0.134 0.866 50 H 0.136 0.864 51 H 0.050 0.950 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 10.801 -3.585 11.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C -0.050 4.050 4 N -0.265 5.265 5 C 0.110 3.890 6 C -0.555 4.555 7 H 0.079 0.921 8 C -0.183 4.183 9 N -0.534 5.534 10 Si 0.766 3.234 11 H -0.210 1.210 12 H -0.215 1.215 13 H -0.197 1.197 14 C -0.029 4.029 15 H 0.108 0.892 16 C -0.145 4.145 17 C -0.060 4.060 18 H 0.066 0.934 19 C -0.182 4.182 20 N -0.206 5.206 21 C -0.044 4.044 22 C -0.123 4.123 23 C -0.137 4.137 24 C -0.103 4.103 25 C -0.132 4.132 26 C -0.148 4.148 27 C -0.134 4.134 28 C -0.141 4.141 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.026 0.974 35 H 0.090 0.910 36 H 0.017 0.983 37 H -0.016 1.016 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.120 0.880 45 H 0.099 0.901 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.132 0.868 49 H 0.152 0.848 50 H 0.154 0.846 51 H 0.068 0.932 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.820 10.896 -4.186 11.814 hybrid contribution -0.401 -1.637 1.976 2.597 sum 1.419 9.259 -2.211 9.625 Atomic orbital electron populations 1.21699 0.95016 1.01555 1.01509 1.21803 0.95295 0.96816 1.02700 1.21887 0.87582 0.97076 0.98450 1.62320 1.06718 1.24551 1.32862 1.19123 0.92446 0.94044 0.83419 1.21519 1.41507 0.93396 0.99126 0.92101 1.25540 0.95816 1.00799 0.96190 1.70099 1.43462 1.35513 1.04281 0.85866 0.78145 0.82662 0.76722 1.21035 1.21474 1.19665 1.22558 0.96237 0.87475 0.96588 0.89232 1.22400 0.94070 0.98542 0.99500 1.22849 0.93038 0.92570 0.97508 0.93438 1.21637 0.95686 0.99926 1.00952 1.65791 1.02325 1.25826 1.26636 1.21404 1.02161 0.94676 0.86153 1.20515 0.93915 1.00128 0.97788 1.20912 0.98303 0.97881 0.96644 1.20868 0.96003 0.95447 0.98023 1.21067 0.93380 0.98668 1.00039 1.21295 0.99936 0.97161 0.96429 1.21118 0.95224 0.98709 0.98348 1.23957 0.94298 0.95678 1.00123 0.91775 0.92606 0.93484 0.93112 0.91357 0.97445 0.90954 0.98336 1.01599 0.93646 0.89759 0.93233 0.91881 0.92093 0.91346 0.87963 0.90135 0.88097 0.88296 0.86795 0.84774 0.84608 0.93166 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 9.91 71.98 0.71 -3.49 16 2 C -0.13 -4.92 4.83 30.59 0.15 -4.78 16 3 C 0.08 2.97 4.66 86.30 0.40 3.37 16 4 N -0.54 -22.74 4.38 -869.67 -3.81 -26.55 16 5 C 0.24 11.76 3.29 85.56 0.28 12.04 16 6 C -0.52 -27.96 6.88 25.60 0.18 -27.78 16 7 H 0.06 3.32 6.12 -2.91 -0.02 3.30 16 8 C 0.02 0.91 5.46 84.65 0.46 1.37 16 9 N -0.89 -49.29 13.25 21.45 0.28 -49.00 16 10 Si 0.94 43.85 29.54 68.60 2.03 45.88 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 13 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 14 C 0.08 2.88 3.11 45.91 0.14 3.03 16 15 H 0.09 2.88 7.84 -2.38 -0.02 2.86 16 16 C -0.11 -3.65 5.54 31.59 0.17 -3.48 16 17 C 0.05 1.51 2.15 45.06 0.10 1.61 16 18 H 0.05 1.79 4.39 -2.39 -0.01 1.78 16 19 C -0.12 -2.97 9.24 71.98 0.67 -2.30 16 20 N -0.48 -14.48 5.33 -861.24 -4.59 -19.07 16 21 C 0.08 2.31 5.58 85.55 0.48 2.78 16 22 C -0.12 -3.93 3.84 -19.87 -0.08 -4.01 16 23 C -0.12 -4.40 8.04 22.27 0.18 -4.22 16 24 C -0.09 -3.36 10.01 22.27 0.22 -3.14 16 25 C -0.11 -4.15 10.05 22.27 0.22 -3.93 16 26 C -0.13 -4.22 10.05 22.27 0.22 -4.00 16 27 C -0.12 -3.53 7.50 22.27 0.17 -3.36 16 28 C -0.01 -0.37 5.36 86.45 0.46 0.09 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.05 1.97 8.13 -2.39 -0.02 1.95 16 33 H 0.07 3.16 5.14 -2.39 -0.01 3.15 16 34 H 0.01 0.30 7.73 -2.39 -0.02 0.28 16 35 H 0.07 2.36 7.78 -2.39 -0.02 2.34 16 36 H 0.00 -0.08 5.94 -2.39 -0.01 -0.09 16 37 H -0.03 -1.86 6.45 -2.39 -0.02 -1.88 16 38 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 39 H 0.08 2.47 7.84 -2.39 -0.02 2.45 16 40 H 0.05 2.02 7.11 -2.38 -0.02 2.01 16 41 H 0.06 1.32 7.08 -2.39 -0.02 1.31 16 42 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.07 1.51 8.12 -2.39 -0.02 1.49 16 44 H 0.10 2.34 7.83 -2.39 -0.02 2.32 16 45 H 0.08 2.11 8.03 -2.39 -0.02 2.09 16 46 H 0.10 3.75 7.53 -2.91 -0.02 3.73 16 47 H 0.10 4.10 8.06 -2.91 -0.02 4.08 16 48 H 0.11 3.98 8.06 -2.91 -0.02 3.96 16 49 H 0.13 3.62 8.06 -2.91 -0.02 3.59 16 50 H 0.14 3.42 7.19 -2.91 -0.02 3.40 16 51 H 0.05 2.04 2.69 -2.39 -0.01 2.03 16 52 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -58.56 385.45 -0.07 -58.63 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.88 Total: 30.32 kcal Atomic # 6 Polarization: -45.34 SS G_CDS: 5.14 Total: -40.20 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -8.12 Total: -94.63 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -58.56 -0.07 -58.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171763731.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.879 kcal (2) G-P(sol) polarization free energy of solvation -58.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds