Wall clock time and date at job start Tue Mar 31 2020 11:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46795 * 2 1 4 4 N 1.46897 * 109.46690 * 179.34973 * 3 2 1 5 5 C 1.46900 * 111.00416 * 288.06258 * 4 3 2 6 6 C 1.50707 * 109.46805 * 297.84457 * 5 4 3 7 7 H 1.07997 * 120.00142 * 5.18341 * 6 5 4 8 8 C 1.37879 * 119.99991 * 185.18174 * 6 5 4 9 9 N 1.31516 * 119.99937 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99879 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47336 * 60.00161 * 10 8 6 12 12 H 1.48504 * 109.47160 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47277 * 299.99760 * 10 8 6 14 14 C 1.46903 * 111.00013 * 164.10598 * 4 3 2 15 15 H 1.09002 * 110.64277 * 56.85028 * 14 4 3 16 16 C 1.54597 * 110.72506 * 179.97438 * 14 4 3 17 17 C 1.53988 * 105.13612 * 140.49724 * 16 14 4 18 18 H 1.09010 * 109.91633 * 241.87025 * 17 16 14 19 19 C 1.52997 * 110.08565 * 120.67089 * 17 16 14 20 20 N 1.47904 * 107.06314 * 1.22238 * 17 16 14 21 21 C 1.46901 * 111.00301 * 214.15736 * 20 17 16 22 22 C 1.50697 * 109.46868 * 169.99798 * 21 20 17 23 23 C 1.38228 * 120.00236 * 269.72855 * 22 21 20 24 24 C 1.38240 * 120.00194 * 179.81394 * 23 22 21 25 25 C 1.38233 * 119.99693 * 0.41597 * 24 23 22 26 26 C 1.38240 * 120.00117 * 359.81622 * 25 24 23 27 27 C 1.38234 * 119.99619 * 90.00281 * 22 21 20 28 28 C 1.48531 * 105.81648 * 334.67478 * 20 17 16 29 29 H 1.08995 * 109.46990 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47580 * 300.00372 * 1 2 3 31 31 H 1.09007 * 109.46964 * 60.00099 * 1 2 3 32 32 H 1.08992 * 109.47222 * 239.99732 * 2 1 3 33 33 H 1.09002 * 109.46791 * 119.99172 * 2 1 3 34 34 H 1.08995 * 109.47403 * 59.35285 * 3 2 1 35 35 H 1.08996 * 109.46904 * 299.35040 * 3 2 1 36 36 H 1.08995 * 109.47127 * 57.83906 * 5 4 3 37 37 H 1.08999 * 109.47516 * 177.84909 * 5 4 3 38 38 H 0.96999 * 119.99495 * 179.97438 * 9 8 6 39 39 H 1.09001 * 110.30930 * 21.58262 * 16 14 4 40 40 H 1.08999 * 110.39073 * 259.45259 * 16 14 4 41 41 H 1.09002 * 109.47175 * 300.85677 * 19 17 16 42 42 H 1.09005 * 109.47300 * 60.85562 * 19 17 16 43 43 H 1.08997 * 109.47507 * 180.85292 * 19 17 16 44 44 H 1.09003 * 109.46969 * 290.00078 * 21 20 17 45 45 H 1.09001 * 109.46999 * 49.99801 * 21 20 17 46 46 H 1.08003 * 120.00100 * 359.97438 * 23 22 21 47 47 H 1.07996 * 120.00058 * 180.20983 * 24 23 22 48 48 H 1.08005 * 119.99872 * 179.79135 * 25 24 23 49 49 H 1.07999 * 119.99530 * 179.97438 * 26 25 24 50 50 H 1.08001 * 120.00475 * 359.97438 * 27 22 21 51 51 H 1.08999 * 110.66539 * 157.64301 * 28 20 17 52 52 H 1.09004 * 110.66745 * 280.76606 * 28 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5088 1.4426 0.0157 5 6 4.0214 1.0223 1.3267 6 6 3.5705 2.0017 2.3797 7 1 2.8959 2.8034 2.1181 8 6 4.0193 1.8741 3.6772 9 7 4.8404 0.8974 3.9959 10 14 3.4600 3.0875 4.9825 11 1 1.9812 3.0335 5.1075 12 1 4.0795 2.7340 6.2850 13 1 3.8740 4.4594 4.5930 14 6 4.0393 2.7602 -0.3592 15 1 3.6492 3.5339 0.3021 16 6 5.5852 2.7533 -0.3400 17 6 6.0062 3.5908 -1.5617 18 1 6.5756 2.9734 -2.2567 19 6 6.8508 4.7853 -1.1139 20 7 4.7651 4.0662 -2.2105 21 6 4.9269 4.1363 -3.6689 22 6 3.5865 4.3834 -4.3117 23 6 2.7932 3.3160 -4.6884 24 6 1.5619 3.5427 -5.2745 25 6 1.1278 4.8370 -5.4918 26 6 1.9232 5.9046 -5.1194 27 6 3.1527 5.6777 -4.5297 28 6 3.7126 3.0865 -1.8381 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6672 1.9598 0.8841 35 1 1.6861 1.9530 -0.8957 36 1 3.6384 0.0302 1.5655 37 1 5.1107 0.9945 1.2991 38 1 5.1564 0.8079 4.9086 39 1 5.9601 1.7340 -0.4326 40 1 5.9556 3.2101 0.5777 41 1 6.2730 5.4008 -0.4245 42 1 7.7509 4.4270 -0.6142 43 1 7.1305 5.3791 -1.9841 44 1 5.6062 4.9508 -3.9204 45 1 5.3372 3.1949 -4.0346 46 1 3.1342 2.3047 -4.5225 47 1 0.9407 2.7087 -5.5658 48 1 0.1672 5.0142 -5.9528 49 1 1.5841 6.9157 -5.2895 50 1 3.7742 6.5118 -4.2391 51 1 2.7226 3.5344 -1.9237 52 1 3.7854 2.1907 -2.4549 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171763732.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:40 Heat of formation + Delta-G solvation = 24.227823 kcal Electronic energy + Delta-G solvation = -27707.572617 eV Core-core repulsion = 24285.255251 eV Total energy + Delta-G solvation = -3422.317366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.82483 -38.59308 -36.48247 -33.33320 -32.78132 -32.01342 -30.94996 -30.23684 -29.11772 -27.01940 -25.68299 -24.73032 -24.08482 -22.68876 -22.26345 -21.12030 -20.29371 -19.69408 -18.95796 -16.80186 -16.31938 -15.93918 -15.41389 -15.17997 -14.97994 -14.76862 -14.37797 -13.98116 -13.74637 -13.50419 -13.29710 -13.13287 -13.05006 -12.77622 -12.50232 -12.36564 -12.32525 -11.88535 -11.63603 -11.45999 -11.27421 -11.23725 -11.04178 -11.00956 -10.83524 -10.73501 -10.65051 -10.50373 -10.25528 -10.04226 -9.95269 -9.82972 -9.76296 -9.41408 -8.92070 -8.80612 -8.39127 -8.14572 -7.14125 -6.00012 -4.08005 1.31146 1.39268 3.29908 3.34784 3.37797 3.70100 4.28737 4.42818 4.69757 4.82645 4.96401 5.05594 5.07975 5.10257 5.26792 5.30642 5.32877 5.45967 5.49604 5.62035 5.64054 5.65267 5.69233 5.76450 5.82501 5.96739 5.97824 6.00453 6.04938 6.05751 6.12005 6.25964 6.32700 6.37464 6.42272 6.42916 6.47841 6.48081 6.55617 6.58499 6.62433 6.78954 6.89591 6.91559 6.97400 6.99058 7.20290 7.28999 7.35828 7.57238 7.93421 8.12023 8.32950 8.37204 9.01805 9.58125 11.04813 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012259 B = 0.004119 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.485433 B = 6796.621755 C = 7946.272658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.060 3.940 4 N -0.536 5.536 5 C 0.186 3.814 6 C -0.543 4.543 7 H 0.054 0.946 8 C 0.067 3.933 9 N -0.891 5.891 10 Si 0.884 3.116 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.096 3.904 15 H 0.055 0.945 16 C -0.110 4.110 17 C 0.063 3.937 18 H 0.047 0.953 19 C -0.132 4.132 20 N -0.507 5.507 21 C 0.086 3.914 22 C -0.075 4.075 23 C -0.110 4.110 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.101 4.101 28 C 0.048 3.952 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.029 0.971 37 H 0.036 0.964 38 H 0.262 0.738 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.080 0.920 45 H 0.042 0.958 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.070 0.930 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.721 5.844 -17.549 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.069 4.069 4 N -0.260 5.260 5 C 0.060 3.940 6 C -0.582 4.582 7 H 0.073 0.927 8 C -0.136 4.136 9 N -0.530 5.530 10 Si 0.712 3.288 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.013 4.013 15 H 0.073 0.927 16 C -0.148 4.148 17 C -0.045 4.045 18 H 0.065 0.935 19 C -0.190 4.190 20 N -0.232 5.232 21 C -0.042 4.042 22 C -0.076 4.076 23 C -0.128 4.128 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.142 4.142 27 C -0.119 4.119 28 C -0.080 4.080 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.060 0.940 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.089 0.911 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.555 5.941 -17.567 18.720 hybrid contribution -0.431 0.455 1.233 1.383 sum -2.985 6.396 -16.334 17.794 Atomic orbital electron populations 1.21719 0.96891 1.00696 1.01164 1.21430 0.94031 0.97691 1.02118 1.21952 0.89294 0.96030 0.99603 1.62585 1.06580 1.24265 1.32567 1.19781 0.96184 0.95581 0.82441 1.21669 1.28590 1.13493 0.94493 0.92750 1.24909 0.94891 0.95325 0.98425 1.69930 1.32729 1.31087 1.19269 0.86781 0.78977 0.81856 0.81172 1.20353 1.21269 1.20270 1.22168 0.94061 0.91974 0.93137 0.92684 1.22411 0.95967 0.99634 0.96816 1.22430 0.90720 0.95333 0.96017 0.93507 1.21734 0.98806 0.97653 1.00788 1.64801 1.05759 1.46514 1.06107 1.21221 0.93538 1.00813 0.88598 1.19789 0.96360 0.93369 0.98047 1.21127 0.94573 0.98711 0.98431 1.21105 0.96275 0.96918 0.99604 1.21118 0.99627 0.92893 1.00641 1.21124 0.94790 0.98842 0.99451 1.21020 0.96280 0.96402 0.98227 1.23241 0.94878 0.93197 0.96670 0.93398 0.92944 0.93536 0.92610 0.91421 0.93690 0.93403 0.95345 0.94569 0.92866 0.90902 0.90641 0.91872 0.92567 0.93489 0.90211 0.94021 0.86242 0.86252 0.86440 0.86334 0.86065 0.91141 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.11 -2.01 5.99 -26.73 -0.16 -2.17 16 3 C 0.06 1.15 4.71 -3.82 -0.02 1.13 16 4 N -0.54 -11.12 4.51 -225.86 -1.02 -12.14 16 5 C 0.19 4.62 4.67 -4.97 -0.02 4.59 16 6 C -0.54 -14.59 7.52 -34.44 -0.26 -14.85 16 7 H 0.05 1.48 5.95 -52.49 -0.31 1.16 16 8 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 9 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 10 Si 0.88 21.42 29.54 -169.99 -5.02 16.40 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.10 1.86 2.29 -65.85 -0.15 1.71 16 15 H 0.06 1.22 7.01 -51.93 -0.36 0.86 16 16 C -0.11 -2.01 5.04 -25.38 -0.13 -2.14 16 17 C 0.06 0.95 3.07 -66.65 -0.20 0.74 16 18 H 0.05 0.66 7.57 -51.92 -0.39 0.27 16 19 C -0.13 -1.78 9.33 37.16 0.35 -1.43 16 20 N -0.51 -7.50 5.02 -224.01 -1.12 -8.62 16 21 C 0.09 1.07 5.19 -4.98 -0.03 1.04 16 22 C -0.08 -0.92 4.59 -104.63 -0.48 -1.40 16 23 C -0.11 -1.31 8.36 -39.58 -0.33 -1.64 16 24 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 25 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 26 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 27 C -0.10 -1.16 9.70 -39.58 -0.38 -1.54 16 28 C 0.05 0.78 3.62 -1.90 -0.01 0.77 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.34 6.70 -51.93 -0.35 1.00 16 34 H 0.04 0.98 6.23 -51.93 -0.32 0.66 16 35 H 0.05 0.85 6.70 -51.93 -0.35 0.50 16 36 H 0.03 0.76 6.61 -51.93 -0.34 0.42 16 37 H 0.04 0.97 6.59 -51.93 -0.34 0.63 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.07 1.39 7.37 -51.93 -0.38 1.01 16 40 H 0.07 1.51 7.69 -51.93 -0.40 1.11 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 45 H 0.04 0.51 7.75 -51.93 -0.40 0.11 16 46 H 0.12 1.38 7.41 -52.48 -0.39 0.99 16 47 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 48 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 49 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 50 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 51 H 0.07 1.19 7.28 -51.93 -0.38 0.81 16 52 H 0.05 0.80 7.11 -51.93 -0.37 0.43 16 LS Contribution 396.87 15.07 5.98 5.98 Total: -1.00 -28.21 396.87 -12.49 -40.70 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -9.30 Total: 3.05 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -2.75 Total: -20.29 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -1.41 Total: -45.85 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -28.21 -12.49 -40.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171763732.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.928 kcal (2) G-P(sol) polarization free energy of solvation -28.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds