Wall clock time and date at job start Tue Mar 31 2020 11:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46795 * 2 1 4 4 N 1.46897 * 109.46690 * 179.34973 * 3 2 1 5 5 C 1.46900 * 111.00416 * 288.06258 * 4 3 2 6 6 C 1.50707 * 109.46805 * 297.84457 * 5 4 3 7 7 H 1.07997 * 120.00142 * 5.18341 * 6 5 4 8 8 C 1.37879 * 119.99991 * 185.18174 * 6 5 4 9 9 N 1.31516 * 119.99937 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99879 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47336 * 60.00161 * 10 8 6 12 12 H 1.48504 * 109.47160 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47277 * 299.99760 * 10 8 6 14 14 C 1.46903 * 111.00013 * 164.10598 * 4 3 2 15 15 H 1.09002 * 110.64277 * 56.85028 * 14 4 3 16 16 C 1.54597 * 110.72506 * 179.97438 * 14 4 3 17 17 C 1.53988 * 105.13612 * 140.49724 * 16 14 4 18 18 H 1.09010 * 109.91633 * 241.87025 * 17 16 14 19 19 C 1.52997 * 110.08565 * 120.67089 * 17 16 14 20 20 N 1.47904 * 107.06314 * 1.22238 * 17 16 14 21 21 C 1.46901 * 111.00301 * 214.15736 * 20 17 16 22 22 C 1.50697 * 109.46868 * 169.99798 * 21 20 17 23 23 C 1.38228 * 120.00236 * 269.72855 * 22 21 20 24 24 C 1.38240 * 120.00194 * 179.81394 * 23 22 21 25 25 C 1.38233 * 119.99693 * 0.41597 * 24 23 22 26 26 C 1.38240 * 120.00117 * 359.81622 * 25 24 23 27 27 C 1.38234 * 119.99619 * 90.00281 * 22 21 20 28 28 C 1.48531 * 105.81648 * 334.67478 * 20 17 16 29 29 H 1.08995 * 109.46990 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47580 * 300.00372 * 1 2 3 31 31 H 1.09007 * 109.46964 * 60.00099 * 1 2 3 32 32 H 1.08992 * 109.47222 * 239.99732 * 2 1 3 33 33 H 1.09002 * 109.46791 * 119.99172 * 2 1 3 34 34 H 1.08995 * 109.47403 * 59.35285 * 3 2 1 35 35 H 1.08996 * 109.46904 * 299.35040 * 3 2 1 36 36 H 1.08995 * 109.47127 * 57.83906 * 5 4 3 37 37 H 1.08999 * 109.47516 * 177.84909 * 5 4 3 38 38 H 0.96999 * 119.99495 * 179.97438 * 9 8 6 39 39 H 1.09001 * 110.30930 * 21.58262 * 16 14 4 40 40 H 1.08999 * 110.39073 * 259.45259 * 16 14 4 41 41 H 1.09002 * 109.47175 * 300.85677 * 19 17 16 42 42 H 1.09005 * 109.47300 * 60.85562 * 19 17 16 43 43 H 1.08997 * 109.47507 * 180.85292 * 19 17 16 44 44 H 1.09003 * 109.46969 * 290.00078 * 21 20 17 45 45 H 1.09001 * 109.46999 * 49.99801 * 21 20 17 46 46 H 1.08003 * 120.00100 * 359.97438 * 23 22 21 47 47 H 1.07996 * 120.00058 * 180.20983 * 24 23 22 48 48 H 1.08005 * 119.99872 * 179.79135 * 25 24 23 49 49 H 1.07999 * 119.99530 * 179.97438 * 26 25 24 50 50 H 1.08001 * 120.00475 * 359.97438 * 27 22 21 51 51 H 1.08999 * 110.66539 * 157.64301 * 28 20 17 52 52 H 1.09004 * 110.66745 * 280.76606 * 28 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5088 1.4426 0.0157 5 6 4.0214 1.0223 1.3267 6 6 3.5705 2.0017 2.3797 7 1 2.8959 2.8034 2.1181 8 6 4.0193 1.8741 3.6772 9 7 4.8404 0.8974 3.9959 10 14 3.4600 3.0875 4.9825 11 1 1.9812 3.0335 5.1075 12 1 4.0795 2.7340 6.2850 13 1 3.8740 4.4594 4.5930 14 6 4.0393 2.7602 -0.3592 15 1 3.6492 3.5339 0.3021 16 6 5.5852 2.7533 -0.3400 17 6 6.0062 3.5908 -1.5617 18 1 6.5756 2.9734 -2.2567 19 6 6.8508 4.7853 -1.1139 20 7 4.7651 4.0662 -2.2105 21 6 4.9269 4.1363 -3.6689 22 6 3.5865 4.3834 -4.3117 23 6 2.7932 3.3160 -4.6884 24 6 1.5619 3.5427 -5.2745 25 6 1.1278 4.8370 -5.4918 26 6 1.9232 5.9046 -5.1194 27 6 3.1527 5.6777 -4.5297 28 6 3.7126 3.0865 -1.8381 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6672 1.9598 0.8841 35 1 1.6861 1.9530 -0.8957 36 1 3.6384 0.0302 1.5655 37 1 5.1107 0.9945 1.2991 38 1 5.1564 0.8079 4.9086 39 1 5.9601 1.7340 -0.4326 40 1 5.9556 3.2101 0.5777 41 1 6.2730 5.4008 -0.4245 42 1 7.7509 4.4270 -0.6142 43 1 7.1305 5.3791 -1.9841 44 1 5.6062 4.9508 -3.9204 45 1 5.3372 3.1949 -4.0346 46 1 3.1342 2.3047 -4.5225 47 1 0.9407 2.7087 -5.5658 48 1 0.1672 5.0142 -5.9528 49 1 1.5841 6.9157 -5.2895 50 1 3.7742 6.5118 -4.2391 51 1 2.7226 3.5344 -1.9237 52 1 3.7854 2.1907 -2.4549 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171763732.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:39 Heat of formation + Delta-G solvation = 9.147555 kcal Electronic energy + Delta-G solvation = -27708.226546 eV Core-core repulsion = 24285.255251 eV Total energy + Delta-G solvation = -3422.971296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.97266 -39.72379 -38.00343 -34.84904 -34.40900 -33.43913 -31.81144 -31.43701 -30.43906 -28.80926 -27.06842 -26.05506 -25.60521 -24.02685 -23.38058 -22.15917 -21.63507 -21.07496 -20.58533 -18.37502 -17.72127 -17.23550 -16.73445 -16.59245 -16.22022 -16.04622 -15.84740 -15.32347 -15.16641 -14.73388 -14.54205 -14.36979 -14.19342 -14.04931 -13.94655 -13.63785 -13.44397 -13.20677 -13.07190 -12.91537 -12.77065 -12.66773 -12.60385 -12.43153 -12.29231 -12.18136 -11.93697 -11.77964 -11.72971 -11.65114 -11.62934 -11.47000 -11.30936 -11.17991 -10.56030 -9.74218 -9.69480 -9.29358 -9.00312 -8.13033 -6.30406 0.47717 0.57472 1.34898 1.35284 1.43264 2.37070 2.77022 3.10878 3.11962 3.49773 3.73001 3.74300 3.97848 4.01970 4.16625 4.19804 4.22420 4.29683 4.33241 4.38957 4.47089 4.49501 4.60035 4.63850 4.65287 4.71320 4.78699 4.83845 4.86591 4.91157 4.93838 4.97396 5.02541 5.09442 5.16625 5.19581 5.22107 5.24065 5.28026 5.33800 5.37682 5.43229 5.45961 5.51611 5.62228 5.68302 5.75914 5.79203 5.93827 6.08591 6.14167 6.19616 6.32392 6.61948 6.89903 7.39513 8.88757 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012259 B = 0.004119 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.485433 B = 6796.621755 C = 7946.272658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C 0.063 3.937 4 N -0.530 5.530 5 C 0.204 3.796 6 C -0.547 4.547 7 H 0.048 0.952 8 C 0.018 3.982 9 N -0.923 5.923 10 Si 0.945 3.055 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.273 1.273 14 C 0.093 3.907 15 H 0.022 0.978 16 C -0.107 4.107 17 C 0.071 3.929 18 H 0.062 0.938 19 C -0.126 4.126 20 N -0.512 5.512 21 C 0.089 3.911 22 C -0.091 4.091 23 C -0.124 4.124 24 C -0.129 4.129 25 C -0.128 4.128 26 C -0.129 4.129 27 C -0.112 4.112 28 C 0.070 3.930 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.017 0.983 35 H 0.070 0.930 36 H 0.005 0.995 37 H 0.012 0.988 38 H 0.264 0.736 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.046 0.954 46 H 0.118 0.882 47 H 0.136 0.864 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.129 0.871 51 H 0.067 0.933 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.792 7.124 -19.514 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C -0.065 4.065 4 N -0.254 5.254 5 C 0.077 3.923 6 C -0.586 4.586 7 H 0.066 0.934 8 C -0.182 4.182 9 N -0.563 5.563 10 Si 0.771 3.229 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.198 1.198 14 C -0.017 4.017 15 H 0.040 0.960 16 C -0.146 4.146 17 C -0.038 4.038 18 H 0.080 0.920 19 C -0.184 4.184 20 N -0.236 5.236 21 C -0.039 4.039 22 C -0.091 4.091 23 C -0.142 4.142 24 C -0.147 4.147 25 C -0.146 4.146 26 C -0.147 4.147 27 C -0.131 4.131 28 C -0.058 4.058 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.035 0.965 35 H 0.088 0.912 36 H 0.023 0.977 37 H 0.031 0.969 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.113 0.887 45 H 0.064 0.936 46 H 0.136 0.864 47 H 0.154 0.846 48 H 0.158 0.842 49 H 0.157 0.843 50 H 0.147 0.853 51 H 0.085 0.915 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.633 7.229 -19.551 21.159 hybrid contribution -0.121 0.060 1.777 1.782 sum -3.754 7.289 -17.773 19.573 Atomic orbital electron populations 1.21663 0.94259 1.02133 1.01692 1.21386 0.96315 0.96011 1.01098 1.22001 0.88029 0.97289 0.99229 1.62569 1.07715 1.25226 1.29841 1.19388 0.94553 0.94158 0.84209 1.21856 1.28119 1.13393 0.95204 0.93399 1.25661 0.95019 0.96980 1.00523 1.70042 1.33844 1.32669 1.19791 0.85802 0.78698 0.79687 0.78701 1.19763 1.20585 1.19836 1.22194 0.94676 0.90023 0.94808 0.95952 1.22330 0.95233 0.99410 0.97613 1.22373 0.91149 0.95662 0.94595 0.91992 1.21683 0.98389 0.96948 1.01397 1.64814 1.05046 1.45659 1.08110 1.21269 0.94367 1.01633 0.86590 1.19830 0.96420 0.93927 0.98933 1.21235 0.95234 0.98631 0.99113 1.21374 0.96099 0.97930 0.99254 1.21457 1.00488 0.92580 1.00047 1.21435 0.94402 1.00097 0.98787 1.21219 0.96992 0.96369 0.98493 1.22940 0.95302 0.93649 0.93882 0.91556 0.93854 0.91522 0.91458 0.94536 0.96503 0.91190 0.97738 0.96946 0.92747 0.92202 0.93179 0.93508 0.92018 0.91135 0.88669 0.93595 0.86404 0.84642 0.84176 0.84293 0.85341 0.91475 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.91 71.98 0.71 -3.18 16 2 C -0.11 -3.86 5.99 30.60 0.18 -3.68 16 3 C 0.06 2.45 4.71 86.31 0.41 2.86 16 4 N -0.53 -22.75 4.51 -868.48 -3.92 -26.67 16 5 C 0.20 10.66 4.67 85.56 0.40 11.06 16 6 C -0.55 -30.52 7.52 25.60 0.19 -30.33 16 7 H 0.05 2.70 5.95 -2.91 -0.02 2.68 16 8 C 0.02 1.00 5.46 84.65 0.46 1.46 16 9 N -0.92 -55.09 13.29 21.45 0.28 -54.80 16 10 Si 0.95 44.71 29.54 68.60 2.03 46.74 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 14 C 0.09 3.69 2.29 46.12 0.11 3.79 16 15 H 0.02 1.04 7.01 -2.39 -0.02 1.02 16 16 C -0.11 -4.07 5.04 31.47 0.16 -3.91 16 17 C 0.07 2.06 3.07 45.05 0.14 2.19 16 18 H 0.06 1.65 7.57 -2.38 -0.02 1.63 16 19 C -0.13 -3.27 9.33 71.98 0.67 -2.60 16 20 N -0.51 -14.54 5.02 -862.62 -4.33 -18.87 16 21 C 0.09 2.02 5.19 85.56 0.44 2.46 16 22 C -0.09 -2.05 4.59 -19.87 -0.09 -2.14 16 23 C -0.12 -2.72 8.36 22.27 0.19 -2.53 16 24 C -0.13 -2.49 10.05 22.27 0.22 -2.26 16 25 C -0.13 -2.27 10.05 22.27 0.22 -2.04 16 26 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 27 C -0.11 -2.34 9.70 22.27 0.22 -2.13 16 28 C 0.07 2.25 3.62 86.65 0.31 2.57 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.04 1.49 6.70 -2.39 -0.02 1.48 16 34 H 0.02 0.75 6.23 -2.39 -0.01 0.74 16 35 H 0.07 2.42 6.70 -2.39 -0.02 2.40 16 36 H 0.00 0.26 6.61 -2.39 -0.02 0.24 16 37 H 0.01 0.71 6.59 -2.39 -0.02 0.69 16 38 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 39 H 0.06 2.39 7.37 -2.39 -0.02 2.37 16 40 H 0.05 2.11 7.69 -2.39 -0.02 2.09 16 41 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.10 1.89 8.09 -2.39 -0.02 1.87 16 45 H 0.05 1.02 7.75 -2.39 -0.02 1.00 16 46 H 0.12 2.55 7.41 -2.91 -0.02 2.53 16 47 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 48 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 49 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 50 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 51 H 0.07 2.21 7.28 -2.39 -0.02 2.19 16 52 H 0.05 1.65 7.11 -2.39 -0.02 1.64 16 Total: -1.00 -62.60 396.87 0.09 -62.50 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.86 Total: 21.67 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 5.17 Total: -30.57 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -7.97 Total: -100.34 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -62.60 0.09 -62.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171763732.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.651 kcal (2) G-P(sol) polarization free energy of solvation -62.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds