Wall clock time and date at job start Tue Mar 31 2020 10:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46908 * 110.99473 * 2 1 4 4 C 1.50697 * 109.47223 * 66.04913 * 3 2 1 5 5 H 1.08001 * 120.00277 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99928 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 3 8 8 Si 1.86809 * 119.99910 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47143 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46981 * 119.99554 * 8 6 4 11 11 H 1.48500 * 109.46753 * 239.99530 * 8 6 4 12 12 C 1.46899 * 111.00197 * 236.04776 * 2 1 3 13 13 H 1.09001 * 109.57394 * 64.10954 * 12 2 1 14 14 C 1.53114 * 109.52200 * 184.26749 * 12 2 1 15 15 C 1.53037 * 109.27924 * 177.55682 * 14 12 2 16 16 N 1.46843 * 109.52244 * 300.82468 * 15 14 12 17 17 C 1.46905 * 111.00031 * 185.83470 * 16 15 14 18 18 C 1.50706 * 109.46902 * 65.51256 * 17 16 15 19 19 C 1.38240 * 119.99554 * 264.69599 * 18 17 16 20 20 C 1.38231 * 119.99424 * 179.76757 * 19 18 17 21 21 C 1.38232 * 120.00404 * 0.50326 * 20 19 18 22 22 C 1.38244 * 119.99723 * 359.74619 * 21 20 19 23 23 C 1.38225 * 119.99952 * 359.97438 * 22 21 20 24 24 C 1.46850 * 111.19837 * 61.74049 * 16 15 14 25 25 C 1.53005 * 109.45904 * 178.24179 * 24 16 15 26 26 C 1.52994 * 109.46250 * 58.27509 * 24 16 15 27 27 C 1.53031 * 109.52054 * 298.25418 * 24 16 15 28 28 H 1.08996 * 109.46657 * 183.95396 * 1 2 3 29 29 H 1.08997 * 109.47219 * 303.95373 * 1 2 3 30 30 H 1.09006 * 109.46881 * 63.95427 * 1 2 3 31 31 H 1.09001 * 109.46432 * 186.04553 * 3 2 1 32 32 H 1.08999 * 109.47020 * 306.04319 * 3 2 1 33 33 H 0.96995 * 120.00205 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.50718 * 297.50131 * 14 12 2 35 35 H 1.09000 * 109.50489 * 57.61891 * 14 12 2 36 36 H 1.09001 * 109.46093 * 60.84142 * 15 14 12 37 37 H 1.09002 * 109.46296 * 180.81641 * 15 14 12 38 38 H 1.09000 * 109.47449 * 185.50728 * 17 16 15 39 39 H 1.08995 * 109.47277 * 305.51363 * 17 16 15 40 40 H 1.07998 * 120.00000 * 359.97438 * 19 18 17 41 41 H 1.08009 * 120.00135 * 180.22583 * 20 19 18 42 42 H 1.08004 * 120.00377 * 179.72751 * 21 20 19 43 43 H 1.08001 * 120.00009 * 179.97438 * 22 21 20 44 44 H 1.08007 * 119.99944 * 179.97438 * 23 22 21 45 45 H 1.09000 * 109.46761 * 172.95783 * 25 24 16 46 46 H 1.09002 * 109.47237 * 292.95649 * 25 24 16 47 47 H 1.08998 * 109.47549 * 52.96010 * 25 24 16 48 48 H 1.09000 * 109.47359 * 298.39688 * 26 24 16 49 49 H 1.08996 * 109.47794 * 58.39543 * 26 24 16 50 50 H 1.09001 * 109.47225 * 178.39453 * 26 24 16 51 51 H 1.08996 * 109.50955 * 299.23821 * 27 24 16 52 52 H 1.09001 * 109.49818 * 179.12304 * 27 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3716 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0740 1.5116 2.0485 6 6 2.0275 3.3492 1.5289 7 7 2.7134 4.0013 0.6158 8 14 1.5825 4.1870 3.1382 9 1 0.8135 3.2450 3.9904 10 1 2.8240 4.5935 3.8444 11 1 0.7560 5.3886 2.8585 12 6 1.9955 -0.7659 -1.1376 13 1 1.7078 -0.2797 -2.0697 14 6 3.5224 -0.8337 -1.0460 15 6 4.0606 -1.6837 -2.1993 16 7 3.4873 -3.0334 -2.1232 17 6 4.0863 -3.9175 -3.1319 18 6 5.5471 -4.1181 -2.8202 19 6 6.4999 -3.3272 -3.4349 20 6 7.8394 -3.5080 -3.1453 21 6 8.2269 -4.4864 -2.2490 22 6 7.2744 -5.2806 -1.6382 23 6 5.9346 -5.0961 -1.9234 24 6 2.0253 -2.9977 -2.2564 25 6 1.4747 -4.4246 -2.2157 26 6 1.6506 -2.3448 -3.5884 27 6 1.4265 -2.1870 -1.1048 28 1 -0.3632 -1.0252 0.0709 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4513 -0.9234 31 1 3.0797 1.3445 -0.1082 32 1 1.5610 1.9274 -0.8309 33 1 2.9886 4.9172 0.7780 34 1 3.9361 0.1726 -1.1118 35 1 3.8104 -1.2848 -0.0964 36 1 3.7841 -1.2247 -3.1485 37 1 5.1465 -1.7460 -2.1286 38 1 3.5767 -4.8810 -3.1195 39 1 3.9841 -3.4651 -4.1183 40 1 6.1974 -2.5660 -4.1387 41 1 8.5836 -2.8877 -3.6227 42 1 9.2738 -4.6305 -2.0261 43 1 7.5772 -6.0453 -0.9382 44 1 5.1905 -5.7169 -1.4465 45 1 0.3855 -4.3931 -2.1885 46 1 1.8005 -4.9653 -3.1043 47 1 1.8457 -4.9320 -1.3252 48 1 2.0186 -1.3190 -3.6064 49 1 2.0999 -2.9063 -4.4074 50 1 0.5664 -2.3439 -3.7003 51 1 1.6814 -2.6593 -0.1561 52 1 0.3425 -2.1476 -1.2127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171974908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:48 Heat of formation + Delta-G solvation = 18.093765 kcal Electronic energy + Delta-G solvation = -27671.255304 eV Core-core repulsion = 24248.671945 eV Total energy + Delta-G solvation = -3422.583359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.45633 -39.85907 -38.08936 -34.96874 -34.31196 -33.52659 -31.70984 -31.33168 -29.57925 -28.37946 -27.70854 -27.43727 -25.96348 -23.98311 -23.52422 -22.97065 -21.94810 -20.95889 -19.36072 -18.58204 -17.65120 -17.01126 -16.89403 -16.52950 -16.35624 -15.88449 -15.61710 -15.53165 -15.16151 -15.01469 -14.66049 -14.39228 -14.18500 -14.06368 -13.89029 -13.55390 -13.53233 -13.33063 -13.13208 -13.02907 -12.77324 -12.73198 -12.61125 -12.55811 -12.29301 -12.14419 -12.12170 -12.03397 -11.81363 -11.71192 -11.58772 -11.39792 -11.06820 -10.93011 -10.58510 -9.73861 -9.61310 -9.13780 -8.97325 -8.20448 -6.30109 0.48782 0.57916 1.39516 1.40401 1.54137 2.39850 2.75616 3.11605 3.19302 3.27483 3.76324 3.85264 3.93692 3.97377 4.06521 4.20171 4.22316 4.26570 4.33517 4.38445 4.39208 4.47536 4.55702 4.58688 4.65461 4.68156 4.74054 4.76632 4.82514 4.84350 4.87757 4.95774 5.01817 5.07455 5.08742 5.16263 5.16599 5.17920 5.22584 5.23495 5.28707 5.37135 5.37550 5.54008 5.63034 5.67188 5.68898 5.77379 6.07979 6.17244 6.18574 6.28892 6.37939 6.69362 6.86825 7.39402 8.90876 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.003336 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.256087 B = 8392.218991 C = 9596.118243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.545 5.545 3 C 0.207 3.793 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.263 1.263 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.088 3.912 13 H 0.016 0.984 14 C -0.101 4.101 15 C 0.069 3.931 16 N -0.522 5.522 17 C 0.091 3.909 18 C -0.086 4.086 19 C -0.129 4.129 20 C -0.133 4.133 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.108 4.108 24 C 0.111 3.889 25 C -0.134 4.134 26 C -0.180 4.180 27 C -0.086 4.086 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.005 0.995 31 H 0.012 0.988 32 H -0.048 1.048 33 H 0.264 0.736 34 H 0.040 0.960 35 H 0.059 0.941 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.044 0.956 40 H 0.119 0.881 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.130 0.870 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.041 0.959 49 H 0.068 0.932 50 H 0.068 0.932 51 H 0.067 0.933 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.209 -21.380 -10.149 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.269 5.269 3 C 0.081 3.919 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.187 1.187 10 H -0.204 1.204 11 H -0.204 1.204 12 C -0.021 4.021 13 H 0.034 0.966 14 C -0.139 4.139 15 C -0.060 4.060 16 N -0.246 5.246 17 C -0.035 4.035 18 C -0.087 4.087 19 C -0.147 4.147 20 C -0.151 4.151 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.127 4.127 24 C 0.021 3.979 25 C -0.192 4.192 26 C -0.238 4.238 27 C -0.124 4.124 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.024 0.976 31 H 0.030 0.970 32 H -0.030 1.030 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.121 0.879 39 H 0.062 0.938 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.156 0.844 44 H 0.148 0.852 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.060 0.940 49 H 0.087 0.913 50 H 0.087 0.913 51 H 0.086 0.914 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.527 -21.640 -9.285 23.979 hybrid contribution -0.360 2.134 -0.823 2.316 sum 4.167 -19.505 -10.108 22.360 Atomic orbital electron populations 1.22236 0.87835 1.01403 0.99346 1.62106 1.07904 1.15024 1.41841 1.19405 0.94221 0.83784 0.94468 1.21523 1.34623 0.97506 1.02378 0.91990 1.25917 0.95054 0.98063 1.00689 1.70096 1.39473 1.11852 1.36177 0.85339 0.78089 0.78193 0.79031 1.18694 1.20385 1.20377 1.21676 0.94915 0.94789 0.90711 0.96650 1.21521 0.94886 0.98262 0.99252 1.21950 0.99298 0.88573 0.96153 1.62160 1.04142 1.09341 1.48953 1.21169 0.90938 0.98423 0.92995 1.19898 0.95064 0.96297 0.97410 1.21242 0.93522 0.99347 1.00604 1.21375 0.96099 0.98767 0.98824 1.21439 1.00520 0.95896 0.97041 1.21445 0.93082 1.00172 1.00109 1.21204 0.96482 0.98029 0.96951 1.21064 0.86697 0.96696 0.93395 1.21886 1.01234 0.93235 1.02802 1.22503 1.02692 1.00582 0.98054 1.21621 0.99407 0.92498 0.98882 0.89817 0.92640 0.97643 0.97001 1.03026 0.92761 0.94099 0.92215 0.94849 0.90653 0.87869 0.93772 0.86250 0.84912 0.84467 0.84410 0.85161 0.91098 0.91058 0.91719 0.93992 0.91293 0.91269 0.91395 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 8.92 127.69 1.14 2.73 16 2 N -0.54 -24.57 4.62 -901.13 -4.17 -28.74 16 3 C 0.21 11.51 4.54 85.55 0.39 11.90 16 4 C -0.52 -30.56 8.46 25.60 0.22 -30.34 16 5 H 0.06 3.57 7.12 -2.91 -0.02 3.55 16 6 C 0.00 0.03 5.46 84.65 0.46 0.49 16 7 N -0.94 -57.64 13.29 21.45 0.28 -57.36 16 8 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 9 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 C 0.09 3.27 1.70 44.99 0.08 3.34 16 13 H 0.02 0.62 6.52 -2.39 -0.02 0.60 16 14 C -0.10 -3.78 5.10 30.64 0.16 -3.62 16 15 C 0.07 2.01 4.91 86.33 0.42 2.43 16 16 N -0.52 -12.73 4.43 -851.33 -3.77 -16.50 16 17 C 0.09 1.79 4.29 85.56 0.37 2.16 16 18 C -0.09 -1.81 4.71 -19.86 -0.09 -1.91 16 19 C -0.13 -2.70 8.21 22.27 0.18 -2.52 16 20 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 21 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 22 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 23 C -0.11 -2.15 9.72 22.27 0.22 -1.94 16 24 C 0.11 2.54 0.68 3.55 0.00 2.54 16 25 C -0.13 -2.28 7.82 71.98 0.56 -1.71 16 26 C -0.18 -3.94 7.49 71.98 0.54 -3.40 16 27 C -0.09 -2.48 3.72 30.64 0.11 -2.37 16 28 H 0.08 2.70 6.30 -2.39 -0.02 2.68 16 29 H 0.05 2.38 6.76 -2.39 -0.02 2.37 16 30 H 0.01 0.20 8.14 -2.38 -0.02 0.18 16 31 H 0.01 0.71 5.89 -2.39 -0.01 0.70 16 32 H -0.05 -2.92 8.12 -2.39 -0.02 -2.94 16 33 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.04 1.76 6.35 -2.39 -0.02 1.74 16 35 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.03 0.97 6.23 -2.39 -0.01 0.95 16 37 H 0.08 2.20 6.06 -2.39 -0.01 2.19 16 38 H 0.10 1.68 5.80 -2.39 -0.01 1.67 16 39 H 0.04 0.84 6.81 -2.39 -0.02 0.82 16 40 H 0.12 2.35 8.06 -2.91 -0.02 2.32 16 41 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 43 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 0.98 6.54 -2.39 -0.02 0.96 16 47 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.04 1.12 4.81 -2.39 -0.01 1.11 16 49 H 0.07 1.28 6.69 -2.39 -0.02 1.26 16 50 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 51 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 52 H 0.07 1.97 6.50 -2.39 -0.02 1.95 16 Total: -1.00 -67.19 383.04 0.68 -66.51 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.88 Total: 17.60 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 5.43 Total: -28.86 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -7.65 Total: -102.60 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -67.19 0.68 -66.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171974908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.600 kcal (2) G-P(sol) polarization free energy of solvation -67.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds