Wall clock time and date at job start Tue Mar 31 2020 10:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46239 * 2 1 4 4 C 1.53042 * 109.46262 * 240.03596 * 2 1 3 5 5 C 1.53112 * 109.27520 * 299.16202 * 4 2 1 6 6 H 1.08999 * 109.52463 * 62.25588 * 5 4 2 7 7 N 1.46901 * 109.52438 * 182.37703 * 5 4 2 8 8 C 1.46899 * 111.00583 * 205.00361 * 7 5 4 9 9 C 1.52996 * 109.47412 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.47276 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00143 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00204 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99954 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00053 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47416 * 89.99973 * 14 12 10 16 16 H 1.48499 * 109.47215 * 210.00251 * 14 12 10 17 17 H 1.48500 * 109.47109 * 329.99892 * 14 12 10 18 18 C 1.53119 * 109.16530 * 302.34335 * 5 4 2 19 19 C 1.53043 * 109.27417 * 57.65567 * 18 5 4 20 20 N 1.46845 * 109.46623 * 119.98224 * 2 1 3 21 21 C 1.46906 * 110.99877 * 294.17798 * 20 2 1 22 22 C 1.50699 * 109.47140 * 169.99756 * 21 20 2 23 23 C 1.38231 * 119.99759 * 269.72247 * 22 21 20 24 24 C 1.38240 * 119.99873 * 179.76658 * 23 22 21 25 25 C 1.38235 * 119.99636 * 0.50744 * 24 23 22 26 26 C 1.38236 * 120.00231 * 359.74853 * 25 24 23 27 27 C 1.38231 * 119.99930 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.47174 * 300.01964 * 1 2 3 29 29 H 1.09007 * 109.47246 * 60.01652 * 1 2 3 30 30 H 1.08992 * 109.47213 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47207 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47631 * 299.98378 * 3 2 1 33 33 H 1.08998 * 109.47212 * 59.98103 * 3 2 1 34 34 H 1.09000 * 109.50109 * 59.10305 * 4 2 1 35 35 H 1.08998 * 109.50485 * 179.22004 * 4 2 1 36 36 H 1.00901 * 111.00115 * 81.04215 * 7 5 4 37 37 H 1.09003 * 109.46716 * 300.00115 * 8 7 5 38 38 H 1.08999 * 109.46767 * 59.99390 * 8 7 5 39 39 H 1.09000 * 109.46920 * 299.99943 * 9 8 7 40 40 H 1.09004 * 109.46953 * 59.99601 * 9 8 7 41 41 H 0.97000 * 120.00192 * 180.02562 * 13 12 10 42 42 H 1.08997 * 109.50852 * 177.59943 * 18 5 4 43 43 H 1.09003 * 109.50259 * 297.68039 * 18 5 4 44 44 H 1.09000 * 109.45731 * 180.80671 * 19 18 5 45 45 H 1.08997 * 109.45948 * 60.83690 * 19 18 5 46 46 H 1.09004 * 109.47040 * 289.99694 * 21 20 2 47 47 H 1.09000 * 109.47033 * 49.99646 * 21 20 2 48 48 H 1.07999 * 120.00208 * 0.02562 * 23 22 21 49 49 H 1.07997 * 120.00208 * 180.23609 * 24 23 22 50 50 H 1.08004 * 120.00085 * 179.72242 * 25 24 23 51 51 H 1.08000 * 120.00336 * 179.97438 * 26 25 24 52 52 H 1.08002 * 120.00382 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 1.5443 -2.1693 -1.2359 6 1 0.4548 -2.1819 -1.2676 7 7 2.0775 -2.8821 -2.4044 8 6 1.2162 -4.0151 -2.7683 9 6 1.8024 -4.7307 -3.9870 10 6 0.9192 -5.8934 -4.3598 11 1 0.0285 -6.1009 -3.7853 12 6 1.2475 -6.6916 -5.4350 13 7 2.3318 -6.4386 -6.1349 14 14 0.1522 -8.1323 -5.8976 15 1 -0.8786 -7.6796 -6.8659 16 1 0.9762 -9.2020 -6.5158 17 1 -0.5116 -8.6608 -4.6789 18 6 2.0269 -2.8532 0.0463 19 6 1.5174 -2.0706 1.2588 20 7 2.0193 -0.6919 1.1992 21 6 1.6651 0.0503 2.4166 22 6 1.9607 -0.7985 3.6262 23 6 0.9869 -1.6355 4.1378 24 6 1.2595 -2.4177 5.2446 25 6 2.5026 -2.3549 5.8459 26 6 3.4748 -1.5139 5.3375 27 6 3.2036 -0.7352 4.2280 28 1 -0.3634 0.5142 0.8898 29 1 -0.3634 0.5136 -0.8902 30 1 -0.3633 -1.0276 0.0005 31 1 3.1297 1.4428 0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6760 1.9565 0.8898 34 1 1.6636 -0.2160 -2.1400 35 1 3.1298 -0.7090 -1.2578 36 1 3.0255 -3.1865 -2.2408 37 1 1.1580 -4.7108 -1.9311 38 1 0.2174 -3.6501 -3.0074 39 1 1.8602 -4.0348 -4.8239 40 1 2.8014 -5.0957 -3.7482 41 1 2.5626 -6.9999 -6.8916 42 1 1.6415 -3.8721 0.0826 43 1 3.1166 -2.8756 0.0587 44 1 1.8713 -2.5468 2.1732 45 1 0.4274 -2.0609 1.2528 46 1 2.2502 0.9687 2.4653 47 1 0.6035 0.2965 2.3960 48 1 0.0143 -1.6816 3.6704 49 1 0.5000 -3.0745 5.6420 50 1 2.7143 -2.9627 6.7133 51 1 4.4459 -1.4645 5.8075 52 1 3.9629 -0.0778 3.8309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171984934.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:55 Heat of formation + Delta-G solvation = 18.648844 kcal Electronic energy + Delta-G solvation = -26952.093748 eV Core-core repulsion = 23529.534459 eV Total energy + Delta-G solvation = -3422.559289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.61662 -39.07244 -36.25957 -33.78722 -33.26308 -32.01086 -31.11942 -30.58573 -28.58243 -27.48087 -27.06511 -25.68517 -23.91468 -23.09276 -22.48831 -21.29807 -20.68467 -20.51872 -18.34148 -16.99680 -16.36261 -16.18026 -15.84395 -15.54718 -14.89800 -14.78328 -14.70978 -14.41322 -14.07479 -13.90720 -13.60208 -13.35126 -13.24490 -12.95516 -12.83181 -12.54187 -12.41336 -12.09176 -12.04930 -11.87431 -11.75071 -11.49378 -11.39340 -11.21095 -11.08024 -10.99217 -10.90541 -10.72415 -10.57448 -10.44317 -10.12783 -9.93429 -9.29588 -9.13334 -9.09737 -9.00591 -8.33204 -8.26878 -7.69726 -5.97649 -4.00088 1.09130 1.18326 3.33155 3.39128 3.42289 3.45275 3.93875 4.43156 4.48049 4.58856 4.61706 4.74670 4.78529 4.86942 4.92488 4.99612 5.06757 5.17674 5.22863 5.26639 5.38212 5.39623 5.41990 5.43607 5.50306 5.54519 5.63293 5.69792 5.73062 5.77231 5.81227 5.84813 5.96867 6.03095 6.08835 6.11647 6.16950 6.23112 6.28841 6.33664 6.39495 6.39928 6.50675 6.54188 6.76218 7.01808 7.02315 7.10430 7.55765 7.77520 7.87188 8.02265 8.12693 8.46632 9.07325 9.63489 11.13816 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.002626 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.882601 B =10660.482917 C =11696.309177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.108 3.892 3 C -0.140 4.140 4 C -0.089 4.089 5 C 0.086 3.914 6 H 0.070 0.930 7 N -0.686 5.686 8 C 0.067 3.933 9 C 0.025 3.975 10 C -0.521 4.521 11 H 0.053 0.947 12 C 0.057 3.943 13 N -0.893 5.893 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.145 4.145 19 C 0.054 3.946 20 N -0.517 5.517 21 C 0.088 3.912 22 C -0.079 4.079 23 C -0.114 4.114 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.100 4.100 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.337 0.663 37 H 0.014 0.986 38 H 0.055 0.945 39 H 0.024 0.976 40 H 0.013 0.987 41 H 0.260 0.740 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.034 0.966 46 H 0.084 0.916 47 H 0.045 0.955 48 H 0.117 0.883 49 H 0.120 0.880 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.427 15.671 23.304 28.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.018 3.982 3 C -0.198 4.198 4 C -0.128 4.128 5 C -0.025 4.025 6 H 0.089 0.911 7 N -0.315 5.315 8 C -0.061 4.061 9 C -0.012 4.012 10 C -0.560 4.560 11 H 0.072 0.928 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.185 4.185 19 C -0.074 4.074 20 N -0.241 5.241 21 C -0.039 4.039 22 C -0.079 4.079 23 C -0.133 4.133 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.119 4.119 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.154 0.846 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.032 0.968 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.052 0.948 46 H 0.102 0.898 47 H 0.063 0.937 48 H 0.135 0.865 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.138 0.862 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.105 16.011 22.624 27.716 hybrid contribution -1.280 -1.591 0.498 2.102 sum -1.385 14.421 23.121 27.285 Atomic orbital electron populations 1.22536 0.97241 1.02504 1.02034 1.21084 0.92357 0.94078 0.90659 1.21902 1.01943 0.94339 1.01573 1.21563 1.01418 0.94623 0.95172 1.21639 0.98991 0.93601 0.88278 0.91142 1.60667 1.06098 1.29387 1.35390 1.22154 0.96090 0.89448 0.98395 1.19061 0.95868 0.94370 0.91905 1.21181 1.09156 1.12369 1.13266 0.92848 1.25002 0.95252 0.97774 0.96347 1.69972 1.24663 1.39268 1.19352 0.86600 0.80508 0.82284 0.78632 1.20645 1.21218 1.19946 1.22341 1.01878 0.98966 0.95276 1.22171 0.97276 0.88748 0.99172 1.62318 1.59244 1.01941 1.00632 1.21175 0.99483 0.96101 0.87174 1.19808 0.94167 0.97636 0.96337 1.21092 0.99102 0.96539 0.96548 1.21122 0.97155 0.99395 0.96284 1.21152 0.93747 0.99073 1.00114 1.21164 0.99249 0.96794 0.96748 1.21037 0.96151 0.99277 0.95400 0.92873 0.91708 0.91839 0.91716 0.92039 0.92840 0.90964 0.91196 0.84571 0.96780 0.92648 0.95715 0.96847 0.93007 0.91692 0.91153 0.90443 0.94767 0.89764 0.93674 0.86457 0.86188 0.86277 0.86151 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 7.48 37.15 0.28 -1.60 16 2 C 0.11 1.13 0.68 -131.61 -0.09 1.04 16 3 C -0.14 -1.25 8.06 37.16 0.30 -0.95 16 4 C -0.09 -1.14 4.50 -26.65 -0.12 -1.26 16 5 C 0.09 1.25 2.22 -67.59 -0.15 1.10 16 6 H 0.07 1.08 6.22 -51.93 -0.32 0.76 16 7 N -0.69 -12.40 6.25 -106.60 -0.67 -13.07 16 8 C 0.07 1.44 5.43 -3.83 -0.02 1.42 16 9 C 0.03 0.67 5.23 -27.89 -0.15 0.53 16 10 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 11 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 14 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 C -0.15 -1.97 5.35 -26.65 -0.14 -2.11 16 19 C 0.05 0.64 4.29 -3.83 -0.02 0.62 16 20 N -0.52 -5.50 4.58 -220.43 -1.01 -6.51 16 21 C 0.09 0.80 4.39 -4.97 -0.02 0.78 16 22 C -0.08 -0.75 4.11 -104.63 -0.43 -1.18 16 23 C -0.11 -1.05 7.82 -39.58 -0.31 -1.36 16 24 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 25 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 26 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 27 C -0.10 -0.91 9.70 -39.58 -0.38 -1.30 16 28 H 0.05 0.48 6.36 -51.93 -0.33 0.15 16 29 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 30 H 0.06 0.72 4.80 -51.93 -0.25 0.47 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.42 6.55 -51.93 -0.34 0.08 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.34 6.01 8.45 -39.29 -0.33 5.67 16 37 H 0.01 0.30 7.51 -51.93 -0.39 -0.09 16 38 H 0.05 1.20 8.06 -51.93 -0.42 0.78 16 39 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.06 0.95 7.55 -51.93 -0.39 0.55 16 43 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 44 H 0.08 0.93 5.65 -51.93 -0.29 0.64 16 45 H 0.03 0.40 6.19 -51.93 -0.32 0.08 16 46 H 0.08 0.71 6.79 -51.93 -0.35 0.36 16 47 H 0.05 0.40 6.01 -51.93 -0.31 0.09 16 48 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 49 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 50 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 51 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 52 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 390.52 15.07 5.89 5.89 Total: -1.00 -30.35 390.52 -12.02 -42.38 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -9.09 Total: 3.26 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -2.86 Total: -22.30 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -0.94 Total: -46.11 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.35 -12.02 -42.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171984934.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.027 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds