Wall clock time and date at job start Tue Mar 31 2020 10:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46239 * 2 1 4 4 C 1.53042 * 109.46262 * 240.03596 * 2 1 3 5 5 C 1.53112 * 109.27520 * 299.16202 * 4 2 1 6 6 H 1.08999 * 109.52463 * 62.25588 * 5 4 2 7 7 N 1.46901 * 109.52438 * 182.37703 * 5 4 2 8 8 C 1.46899 * 111.00583 * 205.00361 * 7 5 4 9 9 C 1.52996 * 109.47412 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.47276 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00143 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00204 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99954 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00053 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47416 * 89.99973 * 14 12 10 16 16 H 1.48499 * 109.47215 * 210.00251 * 14 12 10 17 17 H 1.48500 * 109.47109 * 329.99892 * 14 12 10 18 18 C 1.53119 * 109.16530 * 302.34335 * 5 4 2 19 19 C 1.53043 * 109.27417 * 57.65567 * 18 5 4 20 20 N 1.46845 * 109.46623 * 119.98224 * 2 1 3 21 21 C 1.46906 * 110.99877 * 294.17798 * 20 2 1 22 22 C 1.50699 * 109.47140 * 169.99756 * 21 20 2 23 23 C 1.38231 * 119.99759 * 269.72247 * 22 21 20 24 24 C 1.38240 * 119.99873 * 179.76658 * 23 22 21 25 25 C 1.38235 * 119.99636 * 0.50744 * 24 23 22 26 26 C 1.38236 * 120.00231 * 359.74853 * 25 24 23 27 27 C 1.38231 * 119.99930 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.47174 * 300.01964 * 1 2 3 29 29 H 1.09007 * 109.47246 * 60.01652 * 1 2 3 30 30 H 1.08992 * 109.47213 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47207 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47631 * 299.98378 * 3 2 1 33 33 H 1.08998 * 109.47212 * 59.98103 * 3 2 1 34 34 H 1.09000 * 109.50109 * 59.10305 * 4 2 1 35 35 H 1.08998 * 109.50485 * 179.22004 * 4 2 1 36 36 H 1.00901 * 111.00115 * 81.04215 * 7 5 4 37 37 H 1.09003 * 109.46716 * 300.00115 * 8 7 5 38 38 H 1.08999 * 109.46767 * 59.99390 * 8 7 5 39 39 H 1.09000 * 109.46920 * 299.99943 * 9 8 7 40 40 H 1.09004 * 109.46953 * 59.99601 * 9 8 7 41 41 H 0.97000 * 120.00192 * 180.02562 * 13 12 10 42 42 H 1.08997 * 109.50852 * 177.59943 * 18 5 4 43 43 H 1.09003 * 109.50259 * 297.68039 * 18 5 4 44 44 H 1.09000 * 109.45731 * 180.80671 * 19 18 5 45 45 H 1.08997 * 109.45948 * 60.83690 * 19 18 5 46 46 H 1.09004 * 109.47040 * 289.99694 * 21 20 2 47 47 H 1.09000 * 109.47033 * 49.99646 * 21 20 2 48 48 H 1.07999 * 120.00208 * 0.02562 * 23 22 21 49 49 H 1.07997 * 120.00208 * 180.23609 * 24 23 22 50 50 H 1.08004 * 120.00085 * 179.72242 * 25 24 23 51 51 H 1.08000 * 120.00336 * 179.97438 * 26 25 24 52 52 H 1.08002 * 120.00382 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 1.5443 -2.1693 -1.2359 6 1 0.4548 -2.1819 -1.2676 7 7 2.0775 -2.8821 -2.4044 8 6 1.2162 -4.0151 -2.7683 9 6 1.8024 -4.7307 -3.9870 10 6 0.9192 -5.8934 -4.3598 11 1 0.0285 -6.1009 -3.7853 12 6 1.2475 -6.6916 -5.4350 13 7 2.3318 -6.4386 -6.1349 14 14 0.1522 -8.1323 -5.8976 15 1 -0.8786 -7.6796 -6.8659 16 1 0.9762 -9.2020 -6.5158 17 1 -0.5116 -8.6608 -4.6789 18 6 2.0269 -2.8532 0.0463 19 6 1.5174 -2.0706 1.2588 20 7 2.0193 -0.6919 1.1992 21 6 1.6651 0.0503 2.4166 22 6 1.9607 -0.7985 3.6262 23 6 0.9869 -1.6355 4.1378 24 6 1.2595 -2.4177 5.2446 25 6 2.5026 -2.3549 5.8459 26 6 3.4748 -1.5139 5.3375 27 6 3.2036 -0.7352 4.2280 28 1 -0.3634 0.5142 0.8898 29 1 -0.3634 0.5136 -0.8902 30 1 -0.3633 -1.0276 0.0005 31 1 3.1297 1.4428 0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6760 1.9565 0.8898 34 1 1.6636 -0.2160 -2.1400 35 1 3.1298 -0.7090 -1.2578 36 1 3.0255 -3.1865 -2.2408 37 1 1.1580 -4.7108 -1.9311 38 1 0.2174 -3.6501 -3.0074 39 1 1.8602 -4.0348 -4.8239 40 1 2.8014 -5.0957 -3.7482 41 1 2.5626 -6.9999 -6.8916 42 1 1.6415 -3.8721 0.0826 43 1 3.1166 -2.8756 0.0587 44 1 1.8713 -2.5468 2.1732 45 1 0.4274 -2.0609 1.2528 46 1 2.2502 0.9687 2.4653 47 1 0.6035 0.2965 2.3960 48 1 0.0143 -1.6816 3.6704 49 1 0.5000 -3.0745 5.6420 50 1 2.7143 -2.9627 6.7133 51 1 4.4459 -1.4645 5.8075 52 1 3.9629 -0.0778 3.8309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171984934.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:54 Heat of formation + Delta-G solvation = 1.299128 kcal Electronic energy + Delta-G solvation = -26952.846088 eV Core-core repulsion = 23529.534459 eV Total energy + Delta-G solvation = -3423.311629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.49041 -39.82074 -37.63504 -35.36901 -34.44959 -33.44649 -31.84498 -31.65027 -30.05842 -28.41935 -28.04477 -26.71934 -25.66729 -23.96866 -23.26955 -22.52634 -22.13717 -21.62081 -19.28983 -18.51952 -17.64824 -17.22619 -16.64748 -16.51037 -16.34526 -16.09581 -15.88236 -15.57695 -15.03680 -14.93218 -14.70160 -14.53711 -14.22763 -14.07562 -14.01002 -13.55899 -13.53372 -13.22545 -13.17757 -12.97415 -12.80828 -12.71354 -12.68654 -12.47578 -12.34449 -12.25124 -12.06153 -11.85693 -11.80038 -11.69202 -11.48932 -11.40765 -11.34265 -10.90123 -10.57381 -9.77776 -9.69078 -9.19601 -9.09063 -8.21131 -6.32876 0.43644 0.53534 1.39214 1.41080 1.52005 2.39623 2.73866 3.12080 3.15633 3.29004 3.73923 3.79407 3.95837 3.97632 4.01960 4.13728 4.18110 4.24582 4.30258 4.39407 4.39735 4.46810 4.51592 4.56624 4.61841 4.64814 4.70364 4.71706 4.80922 4.83293 4.91643 4.98061 4.99430 5.04514 5.09553 5.12507 5.14998 5.18128 5.19788 5.29007 5.32150 5.44460 5.50206 5.59287 5.65716 5.67498 5.73415 5.78885 6.12687 6.14784 6.17401 6.25475 6.30704 6.55603 6.84388 7.36375 8.91120 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.002626 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.882601 B =10660.482917 C =11696.309177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.111 3.889 3 C -0.136 4.136 4 C -0.084 4.084 5 C 0.089 3.911 6 H 0.066 0.934 7 N -0.691 5.691 8 C 0.088 3.912 9 C 0.033 3.967 10 C -0.545 4.545 11 H 0.059 0.941 12 C 0.000 4.000 13 N -0.932 5.932 14 Si 0.967 3.033 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.263 1.263 18 C -0.139 4.139 19 C 0.065 3.935 20 N -0.522 5.522 21 C 0.092 3.908 22 C -0.090 4.090 23 C -0.125 4.125 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.129 4.129 27 C -0.111 4.111 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.337 0.663 37 H 0.016 0.984 38 H 0.054 0.946 39 H -0.006 1.006 40 H -0.010 1.010 41 H 0.264 0.736 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.036 0.964 46 H 0.094 0.906 47 H 0.051 0.949 48 H 0.121 0.879 49 H 0.134 0.866 50 H 0.137 0.863 51 H 0.137 0.863 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.368 16.053 24.841 29.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.022 3.978 3 C -0.193 4.193 4 C -0.122 4.122 5 C -0.021 4.021 6 H 0.084 0.916 7 N -0.321 5.321 8 C -0.041 4.041 9 C -0.004 4.004 10 C -0.583 4.583 11 H 0.077 0.923 12 C -0.198 4.198 13 N -0.572 5.572 14 Si 0.791 3.209 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.187 1.187 18 C -0.178 4.178 19 C -0.063 4.063 20 N -0.246 5.246 21 C -0.035 4.035 22 C -0.091 4.091 23 C -0.143 4.143 24 C -0.149 4.149 25 C -0.148 4.148 26 C -0.147 4.147 27 C -0.130 4.130 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.155 0.845 37 H 0.034 0.966 38 H 0.072 0.928 39 H 0.012 0.988 40 H 0.008 0.992 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.054 0.946 46 H 0.113 0.887 47 H 0.069 0.931 48 H 0.139 0.861 49 H 0.152 0.848 50 H 0.155 0.845 51 H 0.155 0.845 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.050 16.415 24.183 29.247 hybrid contribution -0.933 -1.681 0.049 1.923 sum -1.983 14.734 24.232 28.429 Atomic orbital electron populations 1.22501 0.96756 1.01889 1.02862 1.21041 0.92653 0.94698 0.89448 1.21868 1.01760 0.93090 1.02613 1.21499 1.00922 0.93298 0.96479 1.21687 0.98622 0.94449 0.87378 0.91606 1.60614 1.05742 1.27983 1.37723 1.21749 0.95988 0.90141 0.96236 1.18907 0.94827 0.93772 0.92944 1.21605 1.09694 1.13250 1.13791 0.92264 1.25987 0.96734 1.00901 0.96147 1.70109 1.26491 1.40663 1.19901 0.85419 0.78476 0.78285 0.78689 1.19682 1.20607 1.18722 1.22232 1.01361 0.98550 0.95695 1.22005 0.97228 0.89274 0.97810 1.62286 1.59394 1.01545 1.01389 1.21190 0.99959 0.96132 0.86202 1.19892 0.94490 0.98053 0.96627 1.21227 0.99333 0.96816 0.96964 1.21380 0.97801 0.99518 0.96226 1.21448 0.93595 0.99118 1.00621 1.21439 1.00121 0.96520 0.96631 1.21227 0.96295 0.99687 0.95784 0.91424 0.91525 0.93142 0.91994 0.91510 0.91322 0.91481 0.91877 0.84529 0.96581 0.92786 0.98803 0.99168 0.92704 0.92930 0.91779 0.90548 0.94564 0.88734 0.93147 0.86133 0.84837 0.84508 0.84503 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.39 7.48 71.98 0.54 -2.85 16 2 C 0.11 2.18 0.68 3.55 0.00 2.18 16 3 C -0.14 -2.14 8.06 71.98 0.58 -1.56 16 4 C -0.08 -2.09 4.50 30.65 0.14 -1.95 16 5 C 0.09 2.59 2.22 44.99 0.10 2.69 16 6 H 0.07 2.01 6.22 -2.39 -0.01 2.00 16 7 N -0.69 -25.51 6.25 -491.17 -3.07 -28.58 16 8 C 0.09 3.83 5.43 86.30 0.47 4.30 16 9 C 0.03 1.81 5.23 29.85 0.16 1.97 16 10 C -0.54 -31.84 9.11 25.60 0.23 -31.61 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 12 C 0.00 0.02 5.46 84.66 0.46 0.48 16 13 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 14 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 15 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 18 C -0.14 -3.76 5.35 30.65 0.16 -3.59 16 19 C 0.07 1.46 4.29 86.33 0.37 1.83 16 20 N -0.52 -10.36 4.58 -851.32 -3.90 -14.26 16 21 C 0.09 1.50 4.39 85.56 0.38 1.87 16 22 C -0.09 -1.58 4.11 -19.87 -0.08 -1.66 16 23 C -0.12 -2.14 7.82 22.27 0.17 -1.97 16 24 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 25 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 26 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 27 C -0.11 -1.87 9.70 22.27 0.22 -1.66 16 28 H 0.07 1.07 6.36 -2.38 -0.02 1.05 16 29 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.05 1.08 4.80 -2.39 -0.01 1.06 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 0.89 6.55 -2.39 -0.02 0.87 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.34 12.38 8.45 -89.69 -0.76 11.63 16 37 H 0.02 0.69 7.51 -2.39 -0.02 0.67 16 38 H 0.05 2.36 8.06 -2.39 -0.02 2.34 16 39 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 41 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 42 H 0.05 1.54 7.55 -2.39 -0.02 1.52 16 43 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16 44 H 0.08 1.76 5.65 -2.39 -0.01 1.75 16 45 H 0.04 0.81 6.19 -2.39 -0.01 0.79 16 46 H 0.09 1.36 6.79 -2.38 -0.02 1.35 16 47 H 0.05 0.78 6.01 -2.39 -0.01 0.77 16 48 H 0.12 1.91 8.06 -2.91 -0.02 1.88 16 49 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 50 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 51 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 52 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -65.38 390.52 0.03 -65.35 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.13 Total: 25.01 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 4.57 Total: -36.87 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -6.69 Total: -100.42 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -65.38 0.03 -65.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171984934.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.650 kcal (2) G-P(sol) polarization free energy of solvation -65.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds