Wall clock time and date at job start Tue Mar 31 2020 11:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46840 * 2 1 4 4 C 1.53003 * 109.47215 * 240.00410 * 2 1 3 5 5 C 1.52993 * 109.47343 * 174.99861 * 4 2 1 6 6 C 1.50698 * 109.47414 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99779 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00123 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00414 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00008 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47149 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47312 * 120.00263 * 10 8 6 13 13 H 1.48501 * 109.47222 * 240.00080 * 10 8 6 14 14 N 1.46904 * 109.47398 * 120.00003 * 2 1 3 15 15 C 1.46890 * 110.99966 * 275.00050 * 14 2 1 16 16 C 1.50702 * 109.47198 * 179.97438 * 15 14 2 17 17 C 1.38234 * 119.99895 * 269.72876 * 16 15 14 18 18 C 1.38240 * 120.00062 * 180.32314 * 17 16 15 19 19 C 1.38234 * 119.99686 * 359.92348 * 18 17 16 20 20 C 1.50703 * 119.99499 * 180.02562 * 19 18 17 21 21 N 1.46900 * 109.47105 * 270.02281 * 20 19 18 22 22 C 1.48528 * 111.00026 * 52.61049 * 21 20 19 23 23 C 1.54933 * 103.22886 * 159.71898 * 22 21 20 24 24 C 1.54597 * 102.92052 * 322.58398 * 23 22 21 25 25 C 1.47902 * 110.99528 * 170.00440 * 21 20 19 26 26 C 1.38234 * 120.00244 * 0.07174 * 19 18 17 27 27 C 1.38230 * 119.99864 * 359.95693 * 26 19 18 28 28 H 1.08994 * 109.47692 * 60.00003 * 1 2 3 29 29 H 1.09002 * 109.47334 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47179 * 299.99673 * 1 2 3 31 31 H 1.09006 * 109.46740 * 294.99556 * 4 2 1 32 32 H 1.08998 * 109.47337 * 54.99560 * 4 2 1 33 33 H 1.09000 * 109.46933 * 300.00006 * 5 4 2 34 34 H 1.08998 * 109.47150 * 59.99584 * 5 4 2 35 35 H 0.97000 * 120.00489 * 180.02562 * 9 8 6 36 36 H 1.00901 * 110.99903 * 151.04170 * 14 2 1 37 37 H 1.09003 * 109.47170 * 60.00175 * 15 14 2 38 38 H 1.09001 * 109.47716 * 300.00226 * 15 14 2 39 39 H 1.08001 * 120.00279 * 0.27436 * 17 16 15 40 40 H 1.07997 * 119.99831 * 179.97438 * 18 17 16 41 41 H 1.09001 * 109.47377 * 30.02494 * 20 19 18 42 42 H 1.09005 * 109.46730 * 150.02673 * 20 19 18 43 43 H 1.09004 * 110.66336 * 278.15126 * 22 21 20 44 44 H 1.08998 * 110.66822 * 41.27853 * 22 21 20 45 45 H 1.09007 * 110.72750 * 204.22579 * 23 22 21 46 46 H 1.09004 * 110.72329 * 80.94130 * 23 22 21 47 47 H 1.08999 * 110.30853 * 263.03717 * 24 23 22 48 48 H 1.09003 * 110.30635 * 140.87422 * 24 23 22 49 49 H 1.08999 * 109.92209 * 333.50901 * 25 21 20 50 50 H 1.08995 * 109.92090 * 94.60750 * 25 21 20 51 51 H 1.08002 * 119.99744 * 179.97438 * 26 19 18 52 52 H 1.08000 * 120.00356 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5647 -0.6132 -1.3138 6 6 4.0672 -1.3240 -2.5439 7 1 3.3687 -1.8044 -3.2131 8 6 5.4183 -1.3602 -2.8157 9 7 6.2689 -0.7749 -2.0011 10 14 6.0410 -2.2408 -4.3409 11 1 4.8911 -2.8132 -5.0862 12 1 6.7635 -1.2765 -5.2090 13 1 6.9635 -3.3332 -3.9399 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2225 2.3468 16 6 2.5874 -0.5219 3.5560 17 6 1.6940 -1.1473 4.4054 18 6 2.1567 -1.8245 5.5183 19 6 3.5129 -1.8775 5.7807 20 6 4.0172 -2.6162 6.9935 21 7 4.0812 -1.6953 8.1363 22 6 2.7833 -1.0006 8.3332 23 6 2.8568 -0.5227 9.8052 24 6 3.5813 -1.6911 10.5122 25 6 4.3409 -2.4289 9.3940 26 6 4.4063 -1.2522 4.9311 27 6 3.9435 -0.5745 3.8187 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.7516 -1.7715 -1.2056 32 1 1.6053 -0.2617 -2.1370 33 1 3.8530 0.4371 -1.3574 34 1 3.9994 -1.0727 -0.4261 35 1 7.2195 -0.8000 -2.1925 36 1 2.9173 -1.1205 1.0287 37 1 1.0871 0.6162 2.5525 38 1 2.7588 1.0462 2.1182 39 1 0.6345 -1.1062 4.2002 40 1 1.4587 -2.3127 6.1821 41 1 3.3398 -3.4378 7.2264 42 1 5.0122 -3.0123 6.7899 43 1 2.6955 -0.1504 7.6567 44 1 1.9520 -1.6917 8.1941 45 1 1.8567 -0.3838 10.2161 46 1 3.4383 0.3959 9.8839 47 1 2.8570 -2.3573 10.9808 48 1 4.2805 -1.3082 11.2556 49 1 3.9752 -3.4522 9.3095 50 1 5.4097 -2.4332 9.6075 51 1 5.4658 -1.2933 5.1365 52 1 4.6414 -0.0856 3.1552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476883.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:00 Heat of formation + Delta-G solvation = 7.157648 kcal Electronic energy + Delta-G solvation = -25833.820714 eV Core-core repulsion = 22410.763130 eV Total energy + Delta-G solvation = -3423.057585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.93112 -38.62232 -37.02859 -34.07627 -33.02134 -31.72878 -30.84442 -29.89393 -29.14739 -28.81648 -26.30211 -25.06036 -23.54707 -22.68114 -21.45167 -21.17597 -21.11045 -20.40928 -19.50552 -16.66524 -16.40389 -16.26729 -15.77013 -15.62751 -15.12775 -15.06533 -14.53813 -14.47674 -14.19210 -13.65867 -13.45367 -13.21045 -13.04561 -12.86639 -12.57641 -12.50613 -12.31867 -12.08455 -12.02188 -11.73258 -11.58467 -11.54025 -11.42466 -11.32316 -11.13502 -10.94944 -10.89239 -10.84801 -10.69869 -10.45811 -10.21196 -9.75733 -9.27144 -9.02449 -8.79946 -8.76281 -8.43810 -8.35639 -7.94453 -6.00548 -4.02400 1.37101 1.55107 3.31094 3.38684 3.43043 3.62391 4.02251 4.33754 4.39062 4.46180 4.63282 4.72995 4.80531 4.83664 4.96172 5.07000 5.12077 5.17775 5.21497 5.35493 5.36073 5.44380 5.47043 5.49463 5.52742 5.58562 5.63195 5.70236 5.72359 5.80361 5.83761 5.86242 5.88097 5.93738 6.12013 6.19364 6.20007 6.36717 6.46077 6.52095 6.55486 6.62578 6.66858 6.77649 6.79620 6.92230 7.09211 7.11269 7.51069 7.62646 7.80319 7.91505 7.99847 8.42808 9.04465 9.61854 11.10718 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.002351 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.944104 B =11904.681630 C =13189.532986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.038 0.962 4 C -0.115 4.115 5 C 0.020 3.980 6 C -0.518 4.518 7 H 0.056 0.944 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.681 5.681 15 C 0.096 3.904 16 C -0.071 4.071 17 C -0.100 4.100 18 C -0.118 4.118 19 C -0.091 4.091 20 C 0.088 3.912 21 N -0.512 5.512 22 C 0.037 3.963 23 C -0.126 4.126 24 C -0.131 4.131 25 C 0.033 3.967 26 C -0.097 4.097 27 C -0.110 4.110 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.012 0.988 34 H 0.015 0.985 35 H 0.259 0.741 36 H 0.354 0.646 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.042 0.958 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.044 0.956 50 H 0.079 0.921 51 H 0.121 0.879 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.283 -0.250 23.845 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 H 0.056 0.944 4 C -0.152 4.152 5 C -0.017 4.017 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 N -0.316 5.316 15 C -0.033 4.033 16 C -0.072 4.072 17 C -0.119 4.119 18 C -0.136 4.136 19 C -0.091 4.091 20 C -0.039 4.039 21 N -0.236 5.236 22 C -0.091 4.091 23 C -0.164 4.164 24 C -0.169 4.169 25 C -0.095 4.095 26 C -0.115 4.115 27 C -0.128 4.128 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.030 0.970 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.175 0.825 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.061 0.939 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.062 0.938 50 H 0.097 0.903 51 H 0.139 0.861 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.286 -0.113 23.906 25.302 hybrid contribution 0.668 -0.586 -0.958 1.307 sum -7.618 -0.699 22.948 24.190 Atomic orbital electron populations 1.21788 0.95777 1.01686 1.00131 1.21623 0.94504 0.96119 0.90543 0.94427 1.21830 0.99676 0.99463 0.94276 1.19129 0.88793 0.96828 0.96946 1.21273 0.91955 1.34111 1.08284 0.92623 1.25024 0.97103 0.95635 0.96719 1.69964 1.02309 1.44204 1.37017 0.86551 0.78857 0.79480 0.83212 1.19739 1.21069 1.21014 1.60663 1.34916 1.32096 1.03950 1.20913 1.00093 0.93330 0.88972 1.19869 0.93281 0.98106 0.95923 1.20927 0.99488 0.97304 0.94138 1.20945 0.94626 1.00278 0.97762 1.19599 0.93460 0.99818 0.96260 1.21212 1.01184 0.92751 0.88784 1.64896 1.30369 1.26075 1.02256 1.23252 0.90484 0.98713 0.96625 1.22503 1.00431 0.98587 0.94866 1.22397 0.99280 0.97458 0.97782 1.22897 1.01091 0.95930 0.89542 1.20945 0.99409 0.96974 0.94212 1.21166 0.95209 0.99254 0.97210 0.93030 0.92394 0.93833 0.92469 0.92711 0.96977 0.96655 0.93098 0.82457 0.90836 0.94499 0.86186 0.86879 0.93950 0.89773 0.89788 0.93723 0.91160 0.90737 0.91633 0.91031 0.93806 0.90283 0.86092 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.41 37.15 0.35 -1.64 16 2 C 0.08 1.42 2.65 -67.71 -0.18 1.24 16 3 H 0.04 0.68 7.80 -51.93 -0.40 0.27 16 4 C -0.11 -2.37 4.74 -26.73 -0.13 -2.50 16 5 C 0.02 0.51 4.80 -27.89 -0.13 0.38 16 6 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 7 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 10 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 N -0.68 -11.61 6.30 -108.00 -0.68 -12.29 16 15 C 0.10 1.41 5.61 -4.98 -0.03 1.38 16 16 C -0.07 -1.00 5.39 -104.62 -0.56 -1.56 16 17 C -0.10 -1.26 9.70 -39.58 -0.38 -1.65 16 18 C -0.12 -1.36 8.34 -39.58 -0.33 -1.69 16 19 C -0.09 -1.07 4.60 -104.62 -0.48 -1.55 16 20 C 0.09 0.89 5.19 -4.97 -0.03 0.86 16 21 N -0.51 -5.00 5.39 -231.89 -1.25 -6.25 16 22 C 0.04 0.33 4.97 -1.90 -0.01 0.32 16 23 C -0.13 -0.92 7.06 -24.87 -0.18 -1.09 16 24 C -0.13 -0.87 6.93 -25.37 -0.18 -1.05 16 25 C 0.03 0.26 6.69 -2.75 -0.02 0.24 16 26 C -0.10 -1.26 9.70 -39.59 -0.38 -1.64 16 27 C -0.11 -1.56 9.70 -39.59 -0.38 -1.95 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.57 7.45 -51.93 -0.39 0.19 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.02 0.41 6.43 -51.93 -0.33 0.07 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.35 6.80 6.46 -39.29 -0.25 6.55 16 37 H 0.07 0.98 7.38 -51.93 -0.38 0.60 16 38 H 0.04 0.56 8.00 -51.93 -0.42 0.14 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.11 1.10 7.38 -52.49 -0.39 0.71 16 41 H 0.04 0.40 7.76 -51.93 -0.40 0.00 16 42 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 43 H 0.08 0.86 7.73 -51.93 -0.40 0.46 16 44 H 0.04 0.39 7.09 -51.93 -0.37 0.02 16 45 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.04 0.33 7.57 -51.93 -0.39 -0.07 16 50 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 52 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 406.67 15.07 6.13 6.13 Total: -1.00 -29.89 406.67 -13.14 -43.03 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -9.59 Total: 4.10 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -3.46 Total: -25.40 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -1.19 Total: -44.64 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -29.89 -13.14 -43.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476883.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.184 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds