Wall clock time and date at job start Tue Mar 31 2020 11:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46840 * 2 1 4 4 C 1.53003 * 109.47215 * 240.00410 * 2 1 3 5 5 C 1.52993 * 109.47343 * 174.99861 * 4 2 1 6 6 C 1.50698 * 109.47414 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99779 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00123 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00414 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00008 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47149 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47312 * 120.00263 * 10 8 6 13 13 H 1.48501 * 109.47222 * 240.00080 * 10 8 6 14 14 N 1.46904 * 109.47398 * 120.00003 * 2 1 3 15 15 C 1.46890 * 110.99966 * 275.00050 * 14 2 1 16 16 C 1.50702 * 109.47198 * 179.97438 * 15 14 2 17 17 C 1.38234 * 119.99895 * 269.72876 * 16 15 14 18 18 C 1.38240 * 120.00062 * 180.32314 * 17 16 15 19 19 C 1.38234 * 119.99686 * 359.92348 * 18 17 16 20 20 C 1.50703 * 119.99499 * 180.02562 * 19 18 17 21 21 N 1.46900 * 109.47105 * 270.02281 * 20 19 18 22 22 C 1.48528 * 111.00026 * 52.61049 * 21 20 19 23 23 C 1.54933 * 103.22886 * 159.71898 * 22 21 20 24 24 C 1.54597 * 102.92052 * 322.58398 * 23 22 21 25 25 C 1.47902 * 110.99528 * 170.00440 * 21 20 19 26 26 C 1.38234 * 120.00244 * 0.07174 * 19 18 17 27 27 C 1.38230 * 119.99864 * 359.95693 * 26 19 18 28 28 H 1.08994 * 109.47692 * 60.00003 * 1 2 3 29 29 H 1.09002 * 109.47334 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47179 * 299.99673 * 1 2 3 31 31 H 1.09006 * 109.46740 * 294.99556 * 4 2 1 32 32 H 1.08998 * 109.47337 * 54.99560 * 4 2 1 33 33 H 1.09000 * 109.46933 * 300.00006 * 5 4 2 34 34 H 1.08998 * 109.47150 * 59.99584 * 5 4 2 35 35 H 0.97000 * 120.00489 * 180.02562 * 9 8 6 36 36 H 1.00901 * 110.99903 * 151.04170 * 14 2 1 37 37 H 1.09003 * 109.47170 * 60.00175 * 15 14 2 38 38 H 1.09001 * 109.47716 * 300.00226 * 15 14 2 39 39 H 1.08001 * 120.00279 * 0.27436 * 17 16 15 40 40 H 1.07997 * 119.99831 * 179.97438 * 18 17 16 41 41 H 1.09001 * 109.47377 * 30.02494 * 20 19 18 42 42 H 1.09005 * 109.46730 * 150.02673 * 20 19 18 43 43 H 1.09004 * 110.66336 * 278.15126 * 22 21 20 44 44 H 1.08998 * 110.66822 * 41.27853 * 22 21 20 45 45 H 1.09007 * 110.72750 * 204.22579 * 23 22 21 46 46 H 1.09004 * 110.72329 * 80.94130 * 23 22 21 47 47 H 1.08999 * 110.30853 * 263.03717 * 24 23 22 48 48 H 1.09003 * 110.30635 * 140.87422 * 24 23 22 49 49 H 1.08999 * 109.92209 * 333.50901 * 25 21 20 50 50 H 1.08995 * 109.92090 * 94.60750 * 25 21 20 51 51 H 1.08002 * 119.99744 * 179.97438 * 26 19 18 52 52 H 1.08000 * 120.00356 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5647 -0.6132 -1.3138 6 6 4.0672 -1.3240 -2.5439 7 1 3.3687 -1.8044 -3.2131 8 6 5.4183 -1.3602 -2.8157 9 7 6.2689 -0.7749 -2.0011 10 14 6.0410 -2.2408 -4.3409 11 1 4.8911 -2.8132 -5.0862 12 1 6.7635 -1.2765 -5.2090 13 1 6.9635 -3.3332 -3.9399 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2225 2.3468 16 6 2.5874 -0.5219 3.5560 17 6 1.6940 -1.1473 4.4054 18 6 2.1567 -1.8245 5.5183 19 6 3.5129 -1.8775 5.7807 20 6 4.0172 -2.6162 6.9935 21 7 4.0812 -1.6953 8.1363 22 6 2.7833 -1.0006 8.3332 23 6 2.8568 -0.5227 9.8052 24 6 3.5813 -1.6911 10.5122 25 6 4.3409 -2.4289 9.3940 26 6 4.4063 -1.2522 4.9311 27 6 3.9435 -0.5745 3.8187 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.7516 -1.7715 -1.2056 32 1 1.6053 -0.2617 -2.1370 33 1 3.8530 0.4371 -1.3574 34 1 3.9994 -1.0727 -0.4261 35 1 7.2195 -0.8000 -2.1925 36 1 2.9173 -1.1205 1.0287 37 1 1.0871 0.6162 2.5525 38 1 2.7588 1.0462 2.1182 39 1 0.6345 -1.1062 4.2002 40 1 1.4587 -2.3127 6.1821 41 1 3.3398 -3.4378 7.2264 42 1 5.0122 -3.0123 6.7899 43 1 2.6955 -0.1504 7.6567 44 1 1.9520 -1.6917 8.1941 45 1 1.8567 -0.3838 10.2161 46 1 3.4383 0.3959 9.8839 47 1 2.8570 -2.3573 10.9808 48 1 4.2805 -1.3082 11.2556 49 1 3.9752 -3.4522 9.3095 50 1 5.4097 -2.4332 9.6075 51 1 5.4658 -1.2933 5.1365 52 1 4.6414 -0.0856 3.1552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476883.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:00 Heat of formation + Delta-G solvation = -9.233785 kcal Electronic energy + Delta-G solvation = -25834.531500 eV Core-core repulsion = 22410.763130 eV Total energy + Delta-G solvation = -3423.768370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.82630 -39.47831 -38.39332 -35.52387 -34.60023 -32.96919 -31.84952 -31.34783 -30.25351 -29.62684 -27.42127 -26.80482 -24.63907 -23.68603 -23.20121 -22.05629 -21.69006 -21.34292 -21.04949 -18.56609 -17.44879 -16.98904 -16.88450 -16.73743 -16.53349 -16.39838 -15.95907 -15.70089 -14.98481 -14.72834 -14.45302 -14.42131 -14.35375 -14.10446 -13.95764 -13.74051 -13.33648 -13.20948 -13.19609 -13.01704 -12.87490 -12.82904 -12.48021 -12.44414 -12.32918 -12.20384 -12.02740 -11.92544 -11.80492 -11.64215 -11.58237 -11.41664 -11.29563 -10.96083 -10.56673 -9.79912 -9.67300 -9.35864 -9.23758 -8.21482 -6.32063 0.35370 0.53193 1.38071 1.38577 1.51834 2.39532 2.69187 3.11499 3.22018 3.45921 3.65005 3.78075 3.86980 3.90837 4.05380 4.06736 4.10580 4.15337 4.25075 4.35531 4.36756 4.48008 4.53259 4.56120 4.62272 4.65542 4.69302 4.76486 4.78113 4.82876 4.93482 4.98658 5.00106 5.04081 5.07666 5.08755 5.11612 5.17093 5.20975 5.22188 5.31298 5.44113 5.48828 5.53553 5.66952 5.68723 5.74063 5.83061 5.96507 6.03510 6.11351 6.21452 6.24757 6.38980 6.84613 7.37099 8.90070 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.002351 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.944104 B =11904.681630 C =13189.532986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.085 3.915 3 H 0.029 0.971 4 C -0.102 4.102 5 C 0.027 3.973 6 C -0.542 4.542 7 H 0.058 0.942 8 C 0.000 4.000 9 N -0.931 5.931 10 Si 0.963 3.037 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.278 1.278 14 N -0.681 5.681 15 C 0.100 3.900 16 C -0.086 4.086 17 C -0.101 4.101 18 C -0.113 4.113 19 C -0.088 4.088 20 C 0.091 3.909 21 N -0.528 5.528 22 C 0.036 3.964 23 C -0.124 4.124 24 C -0.127 4.127 25 C 0.031 3.969 26 C -0.108 4.108 27 C -0.129 4.129 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.059 0.941 33 H -0.017 1.017 34 H -0.003 1.003 35 H 0.263 0.737 36 H 0.336 0.664 37 H 0.093 0.907 38 H 0.024 0.976 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.051 0.949 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.050 0.950 50 H 0.079 0.921 51 H 0.125 0.875 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.923 -1.326 24.825 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.024 4.024 3 H 0.047 0.953 4 C -0.140 4.140 5 C -0.010 4.010 6 C -0.579 4.579 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.572 5.572 10 Si 0.788 3.212 11 H -0.186 1.186 12 H -0.204 1.204 13 H -0.204 1.204 14 N -0.314 5.314 15 C -0.029 4.029 16 C -0.086 4.086 17 C -0.120 4.120 18 C -0.131 4.131 19 C -0.088 4.088 20 C -0.036 4.036 21 N -0.253 5.253 22 C -0.091 4.091 23 C -0.162 4.162 24 C -0.165 4.165 25 C -0.097 4.097 26 C -0.127 4.127 27 C -0.148 4.148 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.002 0.998 34 H 0.015 0.985 35 H 0.071 0.929 36 H 0.156 0.844 37 H 0.111 0.889 38 H 0.042 0.958 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.069 0.931 50 H 0.097 0.903 51 H 0.143 0.857 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.950 -1.181 24.894 26.835 hybrid contribution 1.214 -0.233 -1.199 1.722 sum -8.736 -1.414 23.695 25.294 Atomic orbital electron populations 1.21703 0.92847 1.02210 1.01686 1.21584 0.96660 0.94961 0.89242 0.95334 1.21652 0.96107 0.99847 0.96392 1.18997 0.92204 0.94399 0.95379 1.21715 0.92547 1.34441 1.09246 0.92337 1.25963 0.97387 0.96372 1.00086 1.70095 1.02713 1.45402 1.38963 0.85424 0.78422 0.78274 0.79089 1.18626 1.20388 1.20400 1.60776 1.33659 1.32555 1.04402 1.20930 1.00846 0.92639 0.88444 1.19854 0.93379 0.99144 0.96239 1.21127 1.00018 0.96814 0.94018 1.21206 0.94864 0.99519 0.97514 1.19835 0.93566 0.98994 0.96415 1.21185 1.01371 0.92826 0.88237 1.64866 1.31001 1.26517 1.02895 1.23232 0.90347 0.98191 0.97365 1.22502 1.01286 0.98524 0.93884 1.22399 0.99495 0.97214 0.97414 1.22959 1.01395 0.96272 0.89056 1.21064 1.00044 0.97299 0.94247 1.21165 0.95442 1.00318 0.97857 0.91851 0.92327 0.91953 0.92716 0.92267 0.99819 0.98528 0.92855 0.84426 0.88900 0.95810 0.84590 0.84448 0.92788 0.89835 0.91520 0.93098 0.89726 0.91410 0.90388 0.90343 0.93126 0.90309 0.85748 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 9.41 71.98 0.68 -2.78 16 2 C 0.08 2.95 2.65 44.91 0.12 3.07 16 3 H 0.03 1.04 7.80 -2.39 -0.02 1.03 16 4 C -0.10 -4.28 4.74 30.59 0.15 -4.14 16 5 C 0.03 1.46 4.80 29.85 0.14 1.60 16 6 C -0.54 -31.32 9.11 25.60 0.23 -31.09 16 7 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 8 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 9 N -0.93 -57.24 13.29 21.44 0.28 -56.96 16 10 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 11 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 N -0.68 -23.51 6.30 -495.59 -3.12 -26.64 16 15 C 0.10 2.97 5.61 85.56 0.48 3.45 16 16 C -0.09 -2.44 5.39 -19.87 -0.11 -2.54 16 17 C -0.10 -2.44 9.70 22.27 0.22 -2.22 16 18 C -0.11 -2.42 8.34 22.27 0.19 -2.24 16 19 C -0.09 -2.01 4.60 -19.87 -0.09 -2.10 16 20 C 0.09 1.72 5.19 85.56 0.44 2.16 16 21 N -0.53 -9.68 5.39 -887.58 -4.78 -14.47 16 22 C 0.04 0.60 4.97 86.65 0.43 1.03 16 23 C -0.12 -1.59 7.06 31.80 0.22 -1.37 16 24 C -0.13 -1.41 6.93 31.47 0.22 -1.20 16 25 C 0.03 0.43 6.69 86.45 0.58 1.01 16 26 C -0.11 -2.89 9.70 22.27 0.22 -2.67 16 27 C -0.13 -3.88 9.70 22.27 0.22 -3.67 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.48 7.45 -2.38 -0.02 1.46 16 31 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 34 H 0.00 -0.20 6.43 -2.39 -0.02 -0.21 16 35 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.34 13.58 6.46 -89.69 -0.58 13.00 16 37 H 0.09 2.37 7.38 -2.39 -0.02 2.35 16 38 H 0.02 0.76 8.00 -2.39 -0.02 0.74 16 39 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 40 H 0.14 2.27 7.38 -2.91 -0.02 2.25 16 41 H 0.05 0.89 7.76 -2.39 -0.02 0.88 16 42 H 0.08 1.57 8.09 -2.38 -0.02 1.55 16 43 H 0.07 1.32 7.73 -2.38 -0.02 1.30 16 44 H 0.05 0.77 7.09 -2.39 -0.02 0.75 16 45 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.05 0.64 7.57 -2.39 -0.02 0.62 16 50 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.12 3.12 8.06 -2.91 -0.02 3.09 16 52 H 0.11 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -64.95 406.67 -0.52 -65.46 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.28 Total: 28.83 kcal Atomic # 6 Polarization: -48.04 SS G_CDS: 4.79 Total: -43.25 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -7.62 Total: -98.06 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.95 -0.52 -65.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476883.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.231 kcal (2) G-P(sol) polarization free energy of solvation -64.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds