Wall clock time and date at job start Tue Mar 31 2020 11:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 109.47008 * 2 1 4 4 C 1.53000 * 109.47604 * 119.99711 * 2 1 3 5 5 C 1.52991 * 109.47573 * 184.99919 * 4 2 1 6 6 C 1.50698 * 109.47106 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00439 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99978 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00218 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00116 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47065 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47453 * 119.99641 * 10 8 6 13 13 H 1.48505 * 109.47258 * 239.99539 * 10 8 6 14 14 N 1.46905 * 109.47308 * 240.00231 * 2 1 3 15 15 C 1.46898 * 111.00310 * 103.52610 * 14 2 1 16 16 C 1.53115 * 109.52400 * 271.86481 * 15 14 2 17 17 C 1.53040 * 109.27868 * 182.50227 * 16 15 14 18 18 N 1.46850 * 109.57362 * 59.08095 * 17 16 15 19 19 C 1.46895 * 111.00243 * 174.19394 * 18 17 16 20 20 C 1.50697 * 109.47138 * 314.21400 * 19 18 17 21 21 C 1.38235 * 120.00133 * 269.72376 * 20 19 18 22 22 C 1.38230 * 120.00301 * 179.78562 * 21 20 19 23 23 C 1.38235 * 120.00256 * 0.44453 * 22 21 20 24 24 C 1.38244 * 119.99642 * 359.80890 * 23 22 21 25 25 C 1.38234 * 119.99959 * 359.97438 * 24 23 22 26 26 C 1.46846 * 111.20203 * 298.29403 * 18 17 16 27 27 C 1.53035 * 109.52391 * 61.73676 * 26 18 17 28 28 H 1.09002 * 109.47634 * 58.93890 * 1 2 3 29 29 H 1.09003 * 109.47066 * 178.93974 * 1 2 3 30 30 H 1.08999 * 109.47519 * 298.93534 * 1 2 3 31 31 H 1.09005 * 109.46679 * 64.99821 * 4 2 1 32 32 H 1.09003 * 109.46813 * 305.00790 * 4 2 1 33 33 H 1.09005 * 109.47198 * 60.00220 * 5 4 2 34 34 H 1.08996 * 109.47409 * 300.00372 * 5 4 2 35 35 H 0.96997 * 120.00334 * 180.02562 * 9 8 6 36 36 H 1.00896 * 110.99464 * 339.56978 * 14 2 1 37 37 H 1.09000 * 109.51932 * 31.98887 * 15 14 2 38 38 H 1.08998 * 109.50536 * 302.38409 * 16 15 14 39 39 H 1.09008 * 109.50388 * 62.49865 * 16 15 14 40 40 H 1.08998 * 109.40781 * 299.07227 * 17 16 15 41 41 H 1.08993 * 109.45683 * 179.12840 * 17 16 15 42 42 H 1.09005 * 109.47384 * 74.20824 * 19 18 17 43 43 H 1.09002 * 109.47719 * 194.21284 * 19 18 17 44 44 H 1.08004 * 119.99788 * 0.02562 * 21 20 19 45 45 H 1.07999 * 120.00617 * 180.27663 * 22 21 20 46 46 H 1.07999 * 120.00620 * 179.83384 * 23 22 21 47 47 H 1.07997 * 120.00063 * 179.97438 * 24 23 22 48 48 H 1.07999 * 120.00353 * 179.97438 * 25 24 23 49 49 H 1.09006 * 109.45813 * 301.72849 * 26 18 17 50 50 H 1.08991 * 109.45701 * 181.74803 * 26 18 17 51 51 H 1.08998 * 109.50610 * 180.87864 * 27 26 18 52 52 H 1.09007 * 109.50524 * 60.76774 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0671 -1.3241 2.5438 7 1 3.3688 -1.8052 3.2126 8 6 5.4184 -1.3603 2.8155 9 7 6.2690 -0.7750 2.0010 10 14 6.0413 -2.2421 4.3400 11 1 4.8914 -2.8143 5.0853 12 1 6.9639 -3.3341 3.9380 13 1 6.7636 -1.2785 5.2088 14 7 2.0196 -0.6925 -1.1995 15 6 2.4976 0.2676 -2.2034 16 6 1.3310 0.6959 -3.0979 17 6 1.8469 1.6472 -4.1800 18 7 2.8783 0.9719 -4.9779 19 6 3.2978 1.8068 -6.1113 20 6 2.0806 2.3747 -6.7945 21 6 1.4837 1.6822 -7.8313 22 6 0.3645 2.2009 -8.4551 23 6 -0.1524 3.4167 -8.0483 24 6 0.4476 4.1119 -7.0149 25 6 1.5641 3.5910 -6.3882 26 6 4.0294 0.5945 -4.1478 27 6 3.5789 -0.3894 -3.0657 28 1 -0.3634 0.5302 -0.8803 29 1 -0.3633 -1.0275 -0.0190 30 1 -0.3634 0.4972 0.8993 31 1 1.7516 -1.7715 1.2056 32 1 1.6053 -0.2617 2.1370 33 1 3.8532 0.4371 1.3573 34 1 3.9994 -1.0727 0.4260 35 1 7.2196 -0.8008 2.1919 36 1 1.3079 -1.2947 -1.5851 37 1 2.9126 1.1421 -1.7024 38 1 0.8906 -0.1836 -3.5676 39 1 0.5774 1.2031 -2.4953 40 1 2.2737 2.5332 -3.7099 41 1 1.0215 1.9419 -4.8279 42 1 3.9249 2.6219 -5.7498 43 1 3.8625 1.2007 -6.8198 44 1 1.8895 0.7338 -8.1514 45 1 -0.1045 1.6577 -9.2622 46 1 -1.0252 3.8234 -8.5374 47 1 0.0441 5.0620 -6.6973 48 1 2.0332 4.1342 -5.5811 49 1 4.4458 1.4855 -3.6778 50 1 4.7889 0.1245 -4.7725 51 1 4.4304 -0.6573 -2.4401 52 1 3.1749 -1.2866 -3.5349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477067.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:53 Heat of formation + Delta-G solvation = 11.196769 kcal Electronic energy + Delta-G solvation = -26579.015288 eV Core-core repulsion = 23156.132853 eV Total energy + Delta-G solvation = -3422.882435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.08270 -38.77789 -36.81038 -34.06711 -32.78529 -31.44799 -31.21795 -30.58090 -29.59080 -28.33582 -25.70388 -24.92490 -23.25709 -22.68415 -22.43759 -21.30956 -20.99334 -20.16180 -19.15822 -17.00865 -16.31933 -16.07522 -15.62100 -15.53911 -15.14079 -14.77846 -14.51805 -14.34301 -14.11233 -13.82951 -13.66193 -13.29387 -13.03295 -12.97373 -12.66513 -12.49739 -12.29484 -12.14969 -12.02254 -11.91295 -11.44733 -11.37269 -11.23367 -11.11814 -11.08281 -10.89055 -10.76801 -10.61365 -10.42036 -10.31341 -9.83765 -9.57083 -9.16322 -9.13209 -9.03836 -8.85557 -8.33471 -8.20059 -7.76097 -5.86204 -3.86543 1.06371 1.15579 3.37773 3.44576 3.44982 3.49418 4.00169 4.47095 4.50215 4.56528 4.60255 4.74792 4.84493 4.92441 5.01087 5.08725 5.18507 5.24282 5.33942 5.40485 5.40993 5.46846 5.49512 5.51147 5.56184 5.66036 5.67705 5.74922 5.78669 5.81349 5.86043 5.92730 6.06399 6.15833 6.17544 6.20208 6.25789 6.32048 6.37720 6.46046 6.50479 6.59801 6.73516 6.76451 6.96659 6.99587 7.07375 7.39013 7.63166 7.88135 7.93705 8.12201 8.26757 8.61752 9.22637 9.75842 11.24993 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.002423 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.374226 B =11551.733235 C =12265.565529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 H 0.062 0.938 4 C -0.098 4.098 5 C 0.030 3.970 6 C -0.515 4.515 7 H 0.051 0.949 8 C 0.055 3.945 9 N -0.896 5.896 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.667 5.667 15 C 0.092 3.908 16 C -0.144 4.144 17 C 0.057 3.943 18 N -0.530 5.530 19 C 0.091 3.909 20 C -0.079 4.079 21 C -0.100 4.100 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.114 4.114 26 C 0.056 3.944 27 C -0.103 4.103 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.003 0.997 34 H 0.032 0.968 35 H 0.257 0.743 36 H 0.334 0.666 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.029 0.971 41 H 0.077 0.923 42 H 0.042 0.958 43 H 0.084 0.916 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.034 0.966 50 H 0.075 0.925 51 H 0.082 0.918 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.919 8.392 -21.663 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.025 4.025 3 H 0.081 0.919 4 C -0.136 4.136 5 C -0.007 4.007 6 C -0.553 4.553 7 H 0.069 0.931 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.715 3.285 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 N -0.296 5.296 15 C -0.019 4.019 16 C -0.183 4.183 17 C -0.072 4.072 18 N -0.255 5.255 19 C -0.036 4.036 20 C -0.079 4.079 21 C -0.118 4.118 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.072 4.072 27 C -0.141 4.141 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.022 0.978 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.152 0.848 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.102 0.898 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.052 0.948 50 H 0.094 0.906 51 H 0.100 0.900 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.290 7.859 -21.567 25.581 hybrid contribution -0.119 0.722 0.866 1.134 sum -11.409 8.581 -20.701 25.146 Atomic orbital electron populations 1.22518 0.98076 1.01600 1.01198 1.21796 0.91293 0.97412 0.92003 0.91934 1.21640 1.00393 0.98573 0.92970 1.18980 0.88534 0.96165 0.97001 1.21400 0.91825 1.33686 1.08417 0.93081 1.25000 0.97159 0.95840 0.96518 1.69984 1.02048 1.44620 1.36948 0.86633 0.78812 0.79539 0.83564 1.19888 1.21132 1.21239 1.60527 1.42361 1.20832 1.05836 1.21697 0.94024 0.94687 0.91468 1.22434 0.99004 0.99941 0.96968 1.22138 0.95135 0.95072 0.94826 1.62110 1.11816 1.41880 1.09727 1.21095 0.93612 0.95571 0.93324 1.19803 0.97255 0.94598 0.96266 1.21052 0.95725 0.99424 0.95622 1.21163 0.96583 0.96122 1.00130 1.21153 0.99983 0.95459 0.97520 1.21119 0.96257 1.00009 0.96624 1.21113 0.96724 0.95699 0.99716 1.22154 0.91823 0.98491 0.94698 1.21547 0.99380 0.97853 0.95325 0.93632 0.92593 0.92405 0.93351 0.93919 0.97820 0.94978 0.93375 0.84802 0.90998 0.91248 0.91925 0.95241 0.90502 0.93984 0.89812 0.85843 0.86135 0.86279 0.86176 0.86359 0.94755 0.90648 0.89955 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 9.09 37.15 0.34 -2.06 16 2 C 0.08 1.44 2.70 -67.71 -0.18 1.25 16 3 H 0.06 1.12 7.14 -51.92 -0.37 0.75 16 4 C -0.10 -2.07 4.83 -26.74 -0.13 -2.20 16 5 C 0.03 0.80 4.86 -27.89 -0.14 0.67 16 6 C -0.51 -15.08 9.11 -34.44 -0.31 -15.39 16 7 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 8 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 10 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 N -0.67 -10.81 5.58 -99.61 -0.56 -11.37 16 15 C 0.09 1.34 2.51 -67.59 -0.17 1.17 16 16 C -0.14 -1.75 5.36 -26.65 -0.14 -1.89 16 17 C 0.06 0.65 4.57 -3.83 -0.02 0.63 16 18 N -0.53 -6.01 4.80 -236.12 -1.13 -7.15 16 19 C 0.09 0.89 5.43 -4.98 -0.03 0.86 16 20 C -0.08 -0.75 4.12 -104.62 -0.43 -1.18 16 21 C -0.10 -0.89 9.70 -39.59 -0.38 -1.28 16 22 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 23 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 24 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 25 C -0.11 -1.04 7.79 -39.58 -0.31 -1.34 16 26 C 0.06 0.69 5.42 -3.84 -0.02 0.67 16 27 C -0.10 -1.47 5.70 -26.65 -0.15 -1.62 16 28 H 0.04 0.55 6.57 -51.93 -0.34 0.21 16 29 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 34 H 0.03 0.91 7.75 -51.93 -0.40 0.51 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.33 4.88 7.87 -39.29 -0.31 4.57 16 37 H 0.07 1.18 7.28 -51.93 -0.38 0.80 16 38 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 39 H 0.06 0.75 6.59 -51.92 -0.34 0.40 16 40 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.87 5.64 -51.93 -0.29 0.58 16 42 H 0.04 0.40 8.02 -51.93 -0.42 -0.01 16 43 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 44 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 47 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 48 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 49 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.08 0.85 8.12 -51.93 -0.42 0.42 16 51 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 52 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 402.09 15.07 6.06 6.06 Total: -1.00 -31.16 402.09 -12.86 -44.01 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -9.57 Total: 2.39 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -3.37 Total: -24.35 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -0.95 Total: -45.37 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.16 -12.86 -44.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477067.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.211 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds