Wall clock time and date at job start Tue Mar 31 2020 11:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 109.47008 * 2 1 4 4 C 1.53000 * 109.47604 * 119.99711 * 2 1 3 5 5 C 1.52991 * 109.47573 * 184.99919 * 4 2 1 6 6 C 1.50698 * 109.47106 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00439 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99978 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00218 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00116 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47065 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47453 * 119.99641 * 10 8 6 13 13 H 1.48505 * 109.47258 * 239.99539 * 10 8 6 14 14 N 1.46905 * 109.47308 * 240.00231 * 2 1 3 15 15 C 1.46898 * 111.00310 * 103.52610 * 14 2 1 16 16 C 1.53115 * 109.52400 * 271.86481 * 15 14 2 17 17 C 1.53040 * 109.27868 * 182.50227 * 16 15 14 18 18 N 1.46850 * 109.57362 * 59.08095 * 17 16 15 19 19 C 1.46895 * 111.00243 * 174.19394 * 18 17 16 20 20 C 1.50697 * 109.47138 * 314.21400 * 19 18 17 21 21 C 1.38235 * 120.00133 * 269.72376 * 20 19 18 22 22 C 1.38230 * 120.00301 * 179.78562 * 21 20 19 23 23 C 1.38235 * 120.00256 * 0.44453 * 22 21 20 24 24 C 1.38244 * 119.99642 * 359.80890 * 23 22 21 25 25 C 1.38234 * 119.99959 * 359.97438 * 24 23 22 26 26 C 1.46846 * 111.20203 * 298.29403 * 18 17 16 27 27 C 1.53035 * 109.52391 * 61.73676 * 26 18 17 28 28 H 1.09002 * 109.47634 * 58.93890 * 1 2 3 29 29 H 1.09003 * 109.47066 * 178.93974 * 1 2 3 30 30 H 1.08999 * 109.47519 * 298.93534 * 1 2 3 31 31 H 1.09005 * 109.46679 * 64.99821 * 4 2 1 32 32 H 1.09003 * 109.46813 * 305.00790 * 4 2 1 33 33 H 1.09005 * 109.47198 * 60.00220 * 5 4 2 34 34 H 1.08996 * 109.47409 * 300.00372 * 5 4 2 35 35 H 0.96997 * 120.00334 * 180.02562 * 9 8 6 36 36 H 1.00896 * 110.99464 * 339.56978 * 14 2 1 37 37 H 1.09000 * 109.51932 * 31.98887 * 15 14 2 38 38 H 1.08998 * 109.50536 * 302.38409 * 16 15 14 39 39 H 1.09008 * 109.50388 * 62.49865 * 16 15 14 40 40 H 1.08998 * 109.40781 * 299.07227 * 17 16 15 41 41 H 1.08993 * 109.45683 * 179.12840 * 17 16 15 42 42 H 1.09005 * 109.47384 * 74.20824 * 19 18 17 43 43 H 1.09002 * 109.47719 * 194.21284 * 19 18 17 44 44 H 1.08004 * 119.99788 * 0.02562 * 21 20 19 45 45 H 1.07999 * 120.00617 * 180.27663 * 22 21 20 46 46 H 1.07999 * 120.00620 * 179.83384 * 23 22 21 47 47 H 1.07997 * 120.00063 * 179.97438 * 24 23 22 48 48 H 1.07999 * 120.00353 * 179.97438 * 25 24 23 49 49 H 1.09006 * 109.45813 * 301.72849 * 26 18 17 50 50 H 1.08991 * 109.45701 * 181.74803 * 26 18 17 51 51 H 1.08998 * 109.50610 * 180.87864 * 27 26 18 52 52 H 1.09007 * 109.50524 * 60.76774 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0671 -1.3241 2.5438 7 1 3.3688 -1.8052 3.2126 8 6 5.4184 -1.3603 2.8155 9 7 6.2690 -0.7750 2.0010 10 14 6.0413 -2.2421 4.3400 11 1 4.8914 -2.8143 5.0853 12 1 6.9639 -3.3341 3.9380 13 1 6.7636 -1.2785 5.2088 14 7 2.0196 -0.6925 -1.1995 15 6 2.4976 0.2676 -2.2034 16 6 1.3310 0.6959 -3.0979 17 6 1.8469 1.6472 -4.1800 18 7 2.8783 0.9719 -4.9779 19 6 3.2978 1.8068 -6.1113 20 6 2.0806 2.3747 -6.7945 21 6 1.4837 1.6822 -7.8313 22 6 0.3645 2.2009 -8.4551 23 6 -0.1524 3.4167 -8.0483 24 6 0.4476 4.1119 -7.0149 25 6 1.5641 3.5910 -6.3882 26 6 4.0294 0.5945 -4.1478 27 6 3.5789 -0.3894 -3.0657 28 1 -0.3634 0.5302 -0.8803 29 1 -0.3633 -1.0275 -0.0190 30 1 -0.3634 0.4972 0.8993 31 1 1.7516 -1.7715 1.2056 32 1 1.6053 -0.2617 2.1370 33 1 3.8532 0.4371 1.3573 34 1 3.9994 -1.0727 0.4260 35 1 7.2196 -0.8008 2.1919 36 1 1.3079 -1.2947 -1.5851 37 1 2.9126 1.1421 -1.7024 38 1 0.8906 -0.1836 -3.5676 39 1 0.5774 1.2031 -2.4953 40 1 2.2737 2.5332 -3.7099 41 1 1.0215 1.9419 -4.8279 42 1 3.9249 2.6219 -5.7498 43 1 3.8625 1.2007 -6.8198 44 1 1.8895 0.7338 -8.1514 45 1 -0.1045 1.6577 -9.2622 46 1 -1.0252 3.8234 -8.5374 47 1 0.0441 5.0620 -6.6973 48 1 2.0332 4.1342 -5.5811 49 1 4.4458 1.4855 -3.6778 50 1 4.7889 0.1245 -4.7725 51 1 4.4304 -0.6573 -2.4401 52 1 3.1749 -1.2866 -3.5349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172477067.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:52 Heat of formation + Delta-G solvation = -6.336284 kcal Electronic energy + Delta-G solvation = -26579.775578 eV Core-core repulsion = 23156.132853 eV Total energy + Delta-G solvation = -3423.642725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.91111 -39.71975 -38.03133 -35.59247 -34.50602 -32.61035 -31.92131 -31.53053 -31.20949 -29.49438 -27.01481 -26.47448 -24.19608 -23.59634 -23.34953 -23.02870 -21.80701 -21.59758 -20.42505 -18.36005 -17.66902 -17.31152 -16.53116 -16.47376 -16.36729 -16.22531 -15.77179 -15.40654 -15.16501 -14.96471 -14.62434 -14.47294 -14.22961 -14.08611 -13.91877 -13.77548 -13.50126 -13.35236 -13.15514 -13.00790 -12.87953 -12.86808 -12.72564 -12.31702 -12.25182 -12.10906 -12.04369 -11.88296 -11.76897 -11.54964 -11.47884 -11.28237 -11.08571 -10.87172 -10.48899 -9.78396 -9.72988 -9.23695 -9.05888 -8.13949 -6.24149 0.42101 0.52898 1.38971 1.39702 1.52876 2.43369 2.73278 3.16006 3.18055 3.26681 3.72873 3.82123 3.95706 3.98699 4.07584 4.17770 4.18942 4.26019 4.30651 4.33910 4.38690 4.44777 4.47030 4.58539 4.64362 4.65165 4.71404 4.73762 4.80916 4.81992 4.89300 4.99371 5.02050 5.04524 5.11581 5.12543 5.15482 5.19237 5.24843 5.35672 5.37214 5.48985 5.58417 5.59496 5.65159 5.72081 5.89787 6.03052 6.05861 6.09836 6.15165 6.34043 6.36114 6.73328 6.95668 7.43770 8.97476 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.002423 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.374226 B =11551.733235 C =12265.565529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 H 0.049 0.951 4 C -0.089 4.089 5 C 0.041 3.959 6 C -0.541 4.541 7 H 0.054 0.946 8 C -0.003 4.003 9 N -0.933 5.933 10 Si 0.961 3.039 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.278 1.278 14 N -0.685 5.685 15 C 0.097 3.903 16 C -0.130 4.130 17 C 0.062 3.938 18 N -0.531 5.531 19 C 0.093 3.907 20 C -0.091 4.091 21 C -0.110 4.110 22 C -0.127 4.127 23 C -0.126 4.126 24 C -0.129 4.129 25 C -0.125 4.125 26 C 0.063 3.937 27 C -0.097 4.097 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.045 0.955 33 H -0.028 1.028 34 H 0.003 0.997 35 H 0.261 0.739 36 H 0.345 0.655 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.023 0.977 41 H 0.085 0.915 42 H 0.040 0.960 43 H 0.092 0.908 44 H 0.129 0.871 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.136 0.864 48 H 0.118 0.882 49 H 0.024 0.976 50 H 0.087 0.913 51 H 0.047 0.953 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.762 8.210 -22.355 27.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.017 4.017 3 H 0.067 0.933 4 C -0.127 4.127 5 C 0.004 3.996 6 C -0.579 4.579 7 H 0.073 0.927 8 C -0.200 4.200 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.204 1.204 14 N -0.315 5.315 15 C -0.014 4.014 16 C -0.170 4.170 17 C -0.066 4.066 18 N -0.256 5.256 19 C -0.034 4.034 20 C -0.092 4.092 21 C -0.129 4.129 22 C -0.145 4.145 23 C -0.144 4.144 24 C -0.147 4.147 25 C -0.144 4.144 26 C -0.065 4.065 27 C -0.136 4.136 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.064 0.936 33 H -0.010 1.010 34 H 0.022 0.978 35 H 0.069 0.931 36 H 0.164 0.836 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.042 0.958 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.110 0.890 44 H 0.147 0.853 45 H 0.157 0.843 46 H 0.158 0.842 47 H 0.154 0.846 48 H 0.136 0.864 49 H 0.043 0.957 50 H 0.105 0.895 51 H 0.066 0.934 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.151 7.679 -22.271 26.979 hybrid contribution 0.487 0.802 1.035 1.397 sum -12.664 8.481 -21.236 26.139 Atomic orbital electron populations 1.22369 0.94640 1.02637 1.02518 1.21554 0.93868 0.95826 0.90477 0.93299 1.21495 0.96456 0.99163 0.95569 1.18792 0.92314 0.93441 0.95040 1.21840 0.92502 1.34174 1.09378 0.92748 1.25964 0.97411 0.96550 1.00043 1.70126 1.02507 1.45730 1.38976 0.85458 0.78393 0.78315 0.79221 1.18700 1.20397 1.20414 1.60387 1.43117 1.21768 1.06256 1.21595 0.95021 0.93412 0.91337 1.22283 0.97789 1.00281 0.96627 1.22085 0.95353 0.94563 0.94636 1.62101 1.11241 1.42519 1.09728 1.21113 0.94106 0.95438 0.92749 1.19808 0.97400 0.95078 0.96888 1.21219 0.96196 0.99782 0.95668 1.21446 0.96256 0.96375 1.00418 1.21471 1.00456 0.95293 0.97219 1.21377 0.95952 1.00714 0.96632 1.21218 0.97291 0.95795 1.00091 1.22035 0.92484 0.97603 0.94382 1.21445 0.98059 0.98652 0.95442 0.91544 0.91699 0.91830 0.93474 0.93612 1.00968 0.97836 0.93065 0.83553 0.93510 0.90741 0.91147 0.95847 0.89726 0.94139 0.88967 0.85286 0.84260 0.84185 0.84621 0.86404 0.95724 0.89488 0.93396 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 9.09 71.98 0.65 -3.47 16 2 C 0.09 3.15 2.70 44.91 0.12 3.28 16 3 H 0.05 1.80 7.14 -2.38 -0.02 1.78 16 4 C -0.09 -3.82 4.83 30.59 0.15 -3.67 16 5 C 0.04 2.29 4.86 29.84 0.15 2.44 16 6 C -0.54 -32.38 9.11 25.60 0.23 -32.14 16 7 H 0.05 3.14 7.74 -2.91 -0.02 3.12 16 8 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 9 N -0.93 -59.02 13.29 21.45 0.28 -58.73 16 10 Si 0.96 46.06 29.54 68.60 2.03 48.09 16 11 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 14 N -0.68 -22.54 5.58 -469.06 -2.62 -25.16 16 15 C 0.10 2.89 2.51 44.99 0.11 3.01 16 16 C -0.13 -3.05 5.36 30.65 0.16 -2.88 16 17 C 0.06 1.37 4.57 86.33 0.39 1.77 16 18 N -0.53 -11.75 4.80 -900.95 -4.33 -16.08 16 19 C 0.09 1.75 5.43 85.56 0.46 2.21 16 20 C -0.09 -1.64 4.12 -19.86 -0.08 -1.73 16 21 C -0.11 -1.81 9.70 22.27 0.22 -1.60 16 22 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 23 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 24 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 25 C -0.13 -2.15 7.79 22.27 0.17 -1.98 16 26 C 0.06 1.58 5.42 86.33 0.47 2.05 16 27 C -0.10 -2.91 5.70 30.65 0.17 -2.74 16 28 H 0.07 1.43 6.57 -2.39 -0.02 1.41 16 29 H 0.06 1.55 8.12 -2.39 -0.02 1.53 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H -0.03 -1.71 8.14 -2.38 -0.02 -1.73 16 34 H 0.00 0.20 7.75 -2.39 -0.02 0.18 16 35 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.34 9.81 7.87 -89.70 -0.71 9.11 16 37 H 0.05 1.63 7.28 -2.39 -0.02 1.61 16 38 H 0.07 1.70 8.09 -2.39 -0.02 1.68 16 39 H 0.07 1.55 6.59 -2.38 -0.02 1.53 16 40 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.08 1.80 5.64 -2.39 -0.01 1.78 16 42 H 0.04 0.77 8.02 -2.38 -0.02 0.75 16 43 H 0.09 1.56 8.08 -2.39 -0.02 1.54 16 44 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 45 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 46 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 47 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 48 H 0.12 1.95 8.06 -2.91 -0.02 1.92 16 49 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 50 H 0.09 1.96 8.12 -2.39 -0.02 1.94 16 51 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -68.55 402.09 0.05 -68.50 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.15 Total: 23.26 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 4.52 Total: -39.88 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -6.66 Total: -99.97 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -68.55 0.05 -68.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477067.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.166 kcal (2) G-P(sol) polarization free energy of solvation -68.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds