Wall clock time and date at job start Tue Mar 31 2020 11:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46713 * 2 1 4 4 C 1.53004 * 109.47252 * 240.00241 * 2 1 3 5 5 C 1.52994 * 109.47008 * 174.99646 * 4 2 1 6 6 C 1.50702 * 109.47168 * 179.97438 * 5 4 2 7 7 H 1.08008 * 119.99438 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00379 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99780 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00203 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46934 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46930 * 119.99674 * 10 8 6 13 13 H 1.48495 * 109.47019 * 240.00021 * 10 8 6 14 14 N 1.46899 * 109.47206 * 120.00077 * 2 1 3 15 15 C 1.46907 * 110.99847 * 273.92896 * 14 2 1 16 16 C 1.53115 * 109.52664 * 273.19402 * 15 14 2 17 17 C 1.53032 * 109.27945 * 182.44166 * 16 15 14 18 18 N 1.46839 * 109.52477 * 59.18260 * 17 16 15 19 19 C 1.46897 * 111.00411 * 174.16237 * 18 17 16 20 20 C 1.50697 * 109.47668 * 169.99987 * 19 18 17 21 21 C 1.38236 * 120.00013 * 269.72859 * 20 19 18 22 22 C 1.38236 * 120.00273 * 179.78586 * 21 20 19 23 23 C 1.38230 * 119.99671 * 0.44018 * 22 21 20 24 24 C 1.38238 * 119.99963 * 359.80893 * 23 22 21 25 25 C 1.38228 * 120.00141 * 359.97438 * 24 23 22 26 26 C 1.46846 * 111.19795 * 298.25736 * 18 17 16 27 27 C 1.53036 * 109.52514 * 61.74000 * 26 18 17 28 28 H 1.08998 * 109.47030 * 305.13293 * 1 2 3 29 29 H 1.08999 * 109.46892 * 65.13773 * 1 2 3 30 30 H 1.08998 * 109.46396 * 185.13616 * 1 2 3 31 31 H 1.09000 * 109.46515 * 295.00012 * 4 2 1 32 32 H 1.09002 * 109.46994 * 54.99653 * 4 2 1 33 33 H 1.08994 * 109.47698 * 300.00001 * 5 4 2 34 34 H 1.09002 * 109.47238 * 60.00155 * 5 4 2 35 35 H 0.96998 * 119.99382 * 180.02562 * 9 8 6 36 36 H 1.00902 * 111.00232 * 149.98280 * 14 2 1 37 37 H 1.09001 * 109.57444 * 33.35665 * 15 14 2 38 38 H 1.09002 * 109.49937 * 62.50255 * 16 15 14 39 39 H 1.09002 * 109.50351 * 302.38620 * 16 15 14 40 40 H 1.09002 * 109.46281 * 299.15997 * 17 16 15 41 41 H 1.09001 * 109.46122 * 179.20338 * 17 16 15 42 42 H 1.09001 * 109.47141 * 49.99603 * 19 18 17 43 43 H 1.09004 * 109.46914 * 289.99917 * 19 18 17 44 44 H 1.08005 * 119.99676 * 359.97438 * 21 20 19 45 45 H 1.07998 * 120.00133 * 180.27299 * 22 21 20 46 46 H 1.08001 * 120.00119 * 179.83619 * 23 22 21 47 47 H 1.08008 * 119.99863 * 179.97438 * 24 23 22 48 48 H 1.08004 * 119.99909 * 179.97438 * 25 24 23 49 49 H 1.08998 * 109.46503 * 181.76038 * 26 18 17 50 50 H 1.09006 * 109.46307 * 301.72589 * 26 18 17 51 51 H 1.09000 * 109.50500 * 180.87938 * 27 26 18 52 52 H 1.08997 * 109.50341 * 60.76261 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3240 -2.5439 7 1 3.3688 -1.8052 -3.2126 8 6 5.4186 -1.3611 -2.8151 9 7 6.2691 -0.7756 -2.0005 10 14 6.0414 -2.2429 -4.3396 11 1 4.8915 -2.8152 -5.0848 12 1 6.7646 -1.2795 -5.2079 13 1 6.9632 -3.3355 -3.9375 14 7 2.0197 -0.6925 1.1994 15 6 2.1066 0.2286 2.3405 16 6 3.4652 0.9346 2.3261 17 6 3.5738 1.8466 3.5501 18 7 3.4311 1.0461 4.7728 19 6 3.6676 1.8653 5.9690 20 6 3.2763 1.0852 7.1976 21 6 1.9858 1.1669 7.6863 22 6 1.6256 0.4479 8.8107 23 6 2.5584 -0.3457 9.4516 24 6 3.8503 -0.4234 8.9659 25 6 4.2092 0.2921 7.8390 26 6 2.1155 0.3965 4.8316 27 6 1.9633 -0.5589 3.6458 28 1 -0.3633 0.5914 0.8404 29 1 -0.3633 0.4321 -0.9324 30 1 -0.3632 -1.0236 0.0920 31 1 1.7517 -1.7715 -1.2056 32 1 1.6054 -0.2617 -2.1370 33 1 3.8532 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4260 35 1 7.2197 -0.8014 -2.1916 36 1 2.9093 -1.1351 1.0236 37 1 1.3102 0.9698 2.2730 38 1 3.5556 1.5313 1.4184 39 1 4.2619 0.1912 2.3544 40 1 2.7852 2.5983 3.5140 41 1 4.5457 2.3400 3.5503 42 1 3.0698 2.7749 5.9105 43 1 4.7239 2.1278 6.0266 44 1 1.2581 1.7902 7.1878 45 1 0.6162 0.5083 9.1899 46 1 2.2778 -0.9054 10.3316 47 1 4.5793 -1.0432 9.4670 48 1 5.2187 0.2317 7.4598 49 1 2.0282 -0.1635 5.7627 50 1 1.3337 1.1549 4.7895 51 1 0.9806 -1.0292 3.6812 52 1 2.7363 -1.3258 3.6949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477068.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:55 Heat of formation + Delta-G solvation = 7.737571 kcal Electronic energy + Delta-G solvation = -26580.159507 eV Core-core repulsion = 23157.127070 eV Total energy + Delta-G solvation = -3423.032437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.04843 -38.75231 -36.82670 -34.10451 -32.79868 -31.44334 -31.17769 -30.58846 -29.52291 -28.45844 -25.76614 -24.94219 -23.28892 -22.64543 -22.39823 -21.34549 -20.95277 -19.82594 -19.27287 -16.96701 -16.42752 -16.16139 -15.60626 -15.52432 -15.20253 -14.73040 -14.50947 -14.46197 -14.04385 -13.80588 -13.58994 -13.44271 -12.97533 -12.76423 -12.71021 -12.49171 -12.41501 -12.15963 -12.01297 -11.65857 -11.55013 -11.28039 -11.20893 -11.15389 -11.03982 -10.96228 -10.78473 -10.55110 -10.40651 -10.34018 -10.03539 -9.71704 -9.24753 -9.10760 -9.00395 -8.98667 -8.34370 -8.30991 -7.85859 -5.99307 -4.01061 1.10313 1.19913 3.31717 3.39352 3.43683 3.48207 4.03026 4.47123 4.49724 4.55859 4.63568 4.78776 4.88832 4.97664 5.04281 5.09206 5.27071 5.28305 5.30411 5.36858 5.42815 5.47034 5.53917 5.56798 5.64011 5.71806 5.77387 5.78613 5.84110 5.84459 5.93184 5.99518 6.15524 6.18213 6.23379 6.24932 6.30216 6.39542 6.41298 6.45169 6.51123 6.55801 6.64814 6.77568 6.94559 7.02218 7.08893 7.11671 7.60680 7.64966 7.83246 7.96948 8.03257 8.44361 9.05781 9.63093 11.11790 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018009 B = 0.002521 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.398336 B =11102.765481 C =11931.952761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.083 3.917 3 H 0.037 0.963 4 C -0.116 4.116 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 N -0.682 5.682 15 C 0.090 3.910 16 C -0.145 4.145 17 C 0.063 3.937 18 N -0.530 5.530 19 C 0.092 3.908 20 C -0.079 4.079 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.121 4.121 25 C -0.098 4.098 26 C 0.054 3.946 27 C -0.102 4.102 28 H 0.040 0.960 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.011 0.989 34 H 0.016 0.984 35 H 0.259 0.741 36 H 0.353 0.647 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.030 0.970 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.083 0.917 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.124 0.876 49 H 0.079 0.921 50 H 0.027 0.973 51 H 0.068 0.932 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 5.479 21.993 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 H 0.055 0.945 4 C -0.153 4.153 5 C -0.015 4.015 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.718 3.282 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 N -0.316 5.316 15 C -0.021 4.021 16 C -0.184 4.184 17 C -0.065 4.065 18 N -0.255 5.255 19 C -0.035 4.035 20 C -0.080 4.080 21 C -0.133 4.133 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.139 4.139 25 C -0.117 4.117 26 C -0.074 4.074 27 C -0.141 4.141 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.175 0.825 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.048 0.952 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.102 0.898 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.142 0.858 49 H 0.098 0.902 50 H 0.045 0.955 51 H 0.087 0.913 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.739 4.897 22.130 24.292 hybrid contribution 0.682 0.753 -1.056 1.465 sum -8.057 5.650 21.074 23.258 Atomic orbital electron populations 1.21805 0.95983 1.01617 0.99977 1.21583 0.94275 0.96126 0.90684 0.94544 1.21842 0.99721 0.99441 0.94344 1.19111 0.88724 0.96753 0.96900 1.21282 0.91932 1.34090 1.08345 0.92690 1.25020 0.97108 0.95643 0.96673 1.69971 1.02277 1.44184 1.36964 0.86563 0.78853 0.79498 0.83260 1.19767 1.21099 1.21020 1.60704 1.35380 1.30958 1.04518 1.21580 0.95464 0.93489 0.91537 1.22325 0.99449 0.99951 0.96722 1.22036 1.00701 0.94393 0.89412 1.62070 1.30901 1.31460 1.01025 1.21086 1.01585 0.93452 0.87375 1.19782 0.93809 0.98171 0.96200 1.21082 0.95730 0.99862 0.96594 1.21102 0.99469 0.97445 0.96033 1.21151 0.93681 0.99180 1.00058 1.21175 0.96496 0.99527 0.96719 1.21071 0.99675 0.95918 0.95040 1.22232 0.88554 0.96921 0.99680 1.21549 1.02246 0.97909 0.92348 0.94088 0.93109 0.92355 0.92531 0.92892 0.97055 0.96591 0.93131 0.82464 0.91658 0.91188 0.90416 0.95213 0.90798 0.94172 0.89838 0.86446 0.86206 0.86274 0.86086 0.85772 0.90223 0.95493 0.91296 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.39 37.16 0.35 -1.68 16 2 C 0.08 1.44 2.45 -67.71 -0.17 1.28 16 3 H 0.04 0.66 7.27 -51.93 -0.38 0.28 16 4 C -0.12 -2.39 4.74 -26.73 -0.13 -2.52 16 5 C 0.02 0.56 4.81 -27.89 -0.13 0.43 16 6 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 7 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 10 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 N -0.68 -11.47 6.07 -99.60 -0.60 -12.07 16 15 C 0.09 1.30 2.33 -67.59 -0.16 1.15 16 16 C -0.15 -2.16 5.34 -26.66 -0.14 -2.30 16 17 C 0.06 0.78 5.42 -3.84 -0.02 0.76 16 18 N -0.53 -6.33 4.80 -236.13 -1.13 -7.46 16 19 C 0.09 0.93 5.43 -4.98 -0.03 0.90 16 20 C -0.08 -0.78 4.11 -104.63 -0.43 -1.21 16 21 C -0.11 -1.04 7.82 -39.58 -0.31 -1.35 16 22 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 23 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 24 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 25 C -0.10 -0.95 9.70 -39.59 -0.38 -1.33 16 26 C 0.05 0.63 4.58 -3.84 -0.02 0.62 16 27 C -0.10 -1.35 5.70 -26.65 -0.15 -1.50 16 28 H 0.04 0.56 7.60 -51.93 -0.39 0.16 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.02 0.42 6.43 -51.93 -0.33 0.09 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.35 6.69 6.15 -39.29 -0.24 6.45 16 37 H 0.07 0.94 7.25 -51.93 -0.38 0.57 16 38 H 0.07 1.13 7.61 -51.93 -0.40 0.74 16 39 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 40 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 42 H 0.04 0.38 8.02 -51.93 -0.42 -0.04 16 43 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 44 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 47 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 48 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 49 H 0.08 0.93 5.65 -51.93 -0.29 0.64 16 50 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 52 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 401.45 15.07 6.05 6.05 Total: -1.00 -29.53 401.45 -12.85 -42.37 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -9.55 Total: 4.82 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -3.32 Total: -24.49 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -1.00 Total: -45.52 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.53 -12.85 -42.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477068.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.110 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds