Wall clock time and date at job start Tue Mar 31 2020 11:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46713 * 2 1 4 4 C 1.53004 * 109.47252 * 240.00241 * 2 1 3 5 5 C 1.52994 * 109.47008 * 174.99646 * 4 2 1 6 6 C 1.50702 * 109.47168 * 179.97438 * 5 4 2 7 7 H 1.08008 * 119.99438 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00379 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99780 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00203 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46934 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46930 * 119.99674 * 10 8 6 13 13 H 1.48495 * 109.47019 * 240.00021 * 10 8 6 14 14 N 1.46899 * 109.47206 * 120.00077 * 2 1 3 15 15 C 1.46907 * 110.99847 * 273.92896 * 14 2 1 16 16 C 1.53115 * 109.52664 * 273.19402 * 15 14 2 17 17 C 1.53032 * 109.27945 * 182.44166 * 16 15 14 18 18 N 1.46839 * 109.52477 * 59.18260 * 17 16 15 19 19 C 1.46897 * 111.00411 * 174.16237 * 18 17 16 20 20 C 1.50697 * 109.47668 * 169.99987 * 19 18 17 21 21 C 1.38236 * 120.00013 * 269.72859 * 20 19 18 22 22 C 1.38236 * 120.00273 * 179.78586 * 21 20 19 23 23 C 1.38230 * 119.99671 * 0.44018 * 22 21 20 24 24 C 1.38238 * 119.99963 * 359.80893 * 23 22 21 25 25 C 1.38228 * 120.00141 * 359.97438 * 24 23 22 26 26 C 1.46846 * 111.19795 * 298.25736 * 18 17 16 27 27 C 1.53036 * 109.52514 * 61.74000 * 26 18 17 28 28 H 1.08998 * 109.47030 * 305.13293 * 1 2 3 29 29 H 1.08999 * 109.46892 * 65.13773 * 1 2 3 30 30 H 1.08998 * 109.46396 * 185.13616 * 1 2 3 31 31 H 1.09000 * 109.46515 * 295.00012 * 4 2 1 32 32 H 1.09002 * 109.46994 * 54.99653 * 4 2 1 33 33 H 1.08994 * 109.47698 * 300.00001 * 5 4 2 34 34 H 1.09002 * 109.47238 * 60.00155 * 5 4 2 35 35 H 0.96998 * 119.99382 * 180.02562 * 9 8 6 36 36 H 1.00902 * 111.00232 * 149.98280 * 14 2 1 37 37 H 1.09001 * 109.57444 * 33.35665 * 15 14 2 38 38 H 1.09002 * 109.49937 * 62.50255 * 16 15 14 39 39 H 1.09002 * 109.50351 * 302.38620 * 16 15 14 40 40 H 1.09002 * 109.46281 * 299.15997 * 17 16 15 41 41 H 1.09001 * 109.46122 * 179.20338 * 17 16 15 42 42 H 1.09001 * 109.47141 * 49.99603 * 19 18 17 43 43 H 1.09004 * 109.46914 * 289.99917 * 19 18 17 44 44 H 1.08005 * 119.99676 * 359.97438 * 21 20 19 45 45 H 1.07998 * 120.00133 * 180.27299 * 22 21 20 46 46 H 1.08001 * 120.00119 * 179.83619 * 23 22 21 47 47 H 1.08008 * 119.99863 * 179.97438 * 24 23 22 48 48 H 1.08004 * 119.99909 * 179.97438 * 25 24 23 49 49 H 1.08998 * 109.46503 * 181.76038 * 26 18 17 50 50 H 1.09006 * 109.46307 * 301.72589 * 26 18 17 51 51 H 1.09000 * 109.50500 * 180.87938 * 27 26 18 52 52 H 1.08997 * 109.50341 * 60.76261 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3240 -2.5439 7 1 3.3688 -1.8052 -3.2126 8 6 5.4186 -1.3611 -2.8151 9 7 6.2691 -0.7756 -2.0005 10 14 6.0414 -2.2429 -4.3396 11 1 4.8915 -2.8152 -5.0848 12 1 6.7646 -1.2795 -5.2079 13 1 6.9632 -3.3355 -3.9375 14 7 2.0197 -0.6925 1.1994 15 6 2.1066 0.2286 2.3405 16 6 3.4652 0.9346 2.3261 17 6 3.5738 1.8466 3.5501 18 7 3.4311 1.0461 4.7728 19 6 3.6676 1.8653 5.9690 20 6 3.2763 1.0852 7.1976 21 6 1.9858 1.1669 7.6863 22 6 1.6256 0.4479 8.8107 23 6 2.5584 -0.3457 9.4516 24 6 3.8503 -0.4234 8.9659 25 6 4.2092 0.2921 7.8390 26 6 2.1155 0.3965 4.8316 27 6 1.9633 -0.5589 3.6458 28 1 -0.3633 0.5914 0.8404 29 1 -0.3633 0.4321 -0.9324 30 1 -0.3632 -1.0236 0.0920 31 1 1.7517 -1.7715 -1.2056 32 1 1.6054 -0.2617 -2.1370 33 1 3.8532 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4260 35 1 7.2197 -0.8014 -2.1916 36 1 2.9093 -1.1351 1.0236 37 1 1.3102 0.9698 2.2730 38 1 3.5556 1.5313 1.4184 39 1 4.2619 0.1912 2.3544 40 1 2.7852 2.5983 3.5140 41 1 4.5457 2.3400 3.5503 42 1 3.0698 2.7749 5.9105 43 1 4.7239 2.1278 6.0266 44 1 1.2581 1.7902 7.1878 45 1 0.6162 0.5083 9.1899 46 1 2.2778 -0.9054 10.3316 47 1 4.5793 -1.0432 9.4670 48 1 5.2187 0.2317 7.4598 49 1 2.0282 -0.1635 5.7627 50 1 1.3337 1.1549 4.7895 51 1 0.9806 -1.0292 3.6812 52 1 2.7363 -1.3258 3.6949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172477068.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:54 Heat of formation + Delta-G solvation = -8.092095 kcal Electronic energy + Delta-G solvation = -26580.845933 eV Core-core repulsion = 23157.127070 eV Total energy + Delta-G solvation = -3423.718863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90299 -39.73026 -38.09265 -35.60048 -34.51306 -32.52469 -31.95163 -31.60074 -31.13682 -29.61677 -27.12382 -26.43395 -24.28108 -23.62226 -23.37217 -22.95810 -21.78972 -21.16977 -20.58985 -18.49538 -17.64547 -17.27878 -16.69771 -16.53920 -16.36308 -16.19186 -15.87696 -15.41118 -15.08025 -14.98344 -14.62634 -14.42399 -14.28346 -14.21754 -14.04662 -13.63078 -13.45898 -13.33667 -13.12074 -12.97991 -12.94838 -12.86636 -12.67118 -12.36127 -12.21084 -12.18893 -11.93369 -11.85978 -11.78120 -11.70382 -11.44403 -11.35074 -11.19229 -10.91648 -10.54797 -9.76743 -9.70106 -9.27221 -9.15868 -8.19974 -6.30343 0.43387 0.54163 1.38458 1.39166 1.52150 2.40420 2.74265 3.12708 3.17545 3.26153 3.74198 3.82628 3.94161 3.98417 4.10389 4.15374 4.19274 4.26074 4.30587 4.35609 4.40140 4.43365 4.47195 4.57766 4.61611 4.64822 4.70257 4.77414 4.78554 4.82802 4.87638 4.98697 5.00534 5.02250 5.08790 5.13499 5.15392 5.20048 5.23057 5.27325 5.38120 5.45689 5.54746 5.59284 5.66283 5.72862 5.73179 5.84996 6.07984 6.13441 6.16809 6.25877 6.31759 6.47359 6.86268 7.38634 8.91283 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018009 B = 0.002521 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.398336 B =11102.765481 C =11931.952761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.088 3.912 3 H 0.027 0.973 4 C -0.104 4.104 5 C 0.032 3.968 6 C -0.542 4.542 7 H 0.057 0.943 8 C 0.001 3.999 9 N -0.929 5.929 10 Si 0.962 3.038 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.278 1.278 14 N -0.683 5.683 15 C 0.094 3.906 16 C -0.139 4.139 17 C 0.070 3.930 18 N -0.543 5.543 19 C 0.095 3.905 20 C -0.092 4.092 21 C -0.121 4.121 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.130 4.130 25 C -0.115 4.115 26 C 0.063 3.937 27 C -0.095 4.095 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.056 0.944 33 H -0.017 1.017 34 H -0.003 1.003 35 H 0.262 0.738 36 H 0.337 0.663 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.084 0.916 44 H 0.126 0.874 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.136 0.864 48 H 0.122 0.878 49 H 0.083 0.917 50 H 0.038 0.962 51 H 0.077 0.923 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.257 5.395 22.786 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.022 4.022 3 H 0.045 0.955 4 C -0.142 4.142 5 C -0.005 4.005 6 C -0.580 4.580 7 H 0.075 0.925 8 C -0.197 4.197 9 N -0.570 5.570 10 Si 0.786 3.214 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.204 1.204 14 N -0.315 5.315 15 C -0.016 4.016 16 C -0.179 4.179 17 C -0.058 4.058 18 N -0.268 5.268 19 C -0.031 4.031 20 C -0.092 4.092 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.148 4.148 25 C -0.134 4.134 26 C -0.065 4.065 27 C -0.133 4.133 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.001 0.999 34 H 0.016 0.984 35 H 0.071 0.929 36 H 0.157 0.843 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.102 0.898 44 H 0.144 0.856 45 H 0.158 0.842 46 H 0.158 0.842 47 H 0.153 0.847 48 H 0.140 0.860 49 H 0.101 0.899 50 H 0.057 0.943 51 H 0.095 0.905 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.362 4.821 22.934 25.624 hybrid contribution 1.209 0.777 -1.252 1.906 sum -9.153 5.599 21.682 24.192 Atomic orbital electron populations 1.21717 0.93250 1.02148 1.01360 1.21519 0.96249 0.94974 0.89413 0.95457 1.21670 0.96281 0.99810 0.96392 1.18951 0.91980 0.94311 0.95286 1.21720 0.92510 1.34438 1.09330 0.92496 1.25936 0.97384 0.96371 0.99983 1.70100 1.02664 1.45347 1.38869 0.85449 0.78403 0.78304 0.79202 1.18725 1.20419 1.20414 1.60820 1.34253 1.31464 1.04921 1.21631 0.95273 0.93410 0.91315 1.22203 0.98917 0.99451 0.97304 1.21914 1.01359 0.93928 0.88612 1.62009 1.31276 1.32082 1.01438 1.21076 1.01881 0.93520 0.86645 1.19815 0.94411 0.98706 0.96317 1.21240 0.95527 1.00154 0.97012 1.21404 1.00514 0.96914 0.95668 1.21470 0.93386 0.99025 1.00597 1.21424 0.97315 0.99520 0.96510 1.21207 0.99805 0.96566 0.95779 1.22133 0.88748 0.96776 0.98811 1.21482 1.01975 0.97676 0.92217 0.92363 0.92026 0.92281 0.92778 0.92567 0.99879 0.98436 0.92901 0.84296 0.90665 0.93201 0.93174 0.93954 0.90563 0.93246 0.89754 0.85562 0.84208 0.84199 0.84655 0.85984 0.89887 0.94346 0.90488 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 9.39 71.98 0.68 -2.86 16 2 C 0.09 3.06 2.45 44.92 0.11 3.17 16 3 H 0.03 1.00 7.27 -2.39 -0.02 0.98 16 4 C -0.10 -4.34 4.74 30.59 0.14 -4.20 16 5 C 0.03 1.68 4.81 29.85 0.14 1.82 16 6 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 7 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 8 C 0.00 0.06 5.46 84.65 0.46 0.53 16 9 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 10 Si 0.96 44.94 29.54 68.60 2.03 46.96 16 11 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 14 N -0.68 -23.29 6.07 -469.03 -2.85 -26.14 16 15 C 0.09 2.71 2.33 44.99 0.10 2.82 16 16 C -0.14 -4.31 5.34 30.64 0.16 -4.15 16 17 C 0.07 1.74 5.42 86.33 0.47 2.21 16 18 N -0.54 -12.69 4.80 -900.96 -4.32 -17.01 16 19 C 0.10 1.84 5.43 85.56 0.46 2.30 16 20 C -0.09 -1.73 4.11 -19.87 -0.08 -1.81 16 21 C -0.12 -1.99 7.82 22.27 0.17 -1.82 16 22 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 23 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 24 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 25 C -0.11 -2.16 9.70 22.27 0.22 -1.94 16 26 C 0.06 1.40 4.58 86.33 0.40 1.80 16 27 C -0.10 -2.46 5.70 30.65 0.17 -2.28 16 28 H 0.06 1.43 7.60 -2.39 -0.02 1.41 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 34 H 0.00 -0.14 6.43 -2.39 -0.02 -0.16 16 35 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.34 13.43 6.15 -89.69 -0.55 12.88 16 37 H 0.08 2.06 7.25 -2.39 -0.02 2.04 16 38 H 0.05 1.71 7.61 -2.39 -0.02 1.70 16 39 H 0.05 1.81 8.09 -2.39 -0.02 1.79 16 40 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 1.84 8.12 -2.39 -0.02 1.82 16 42 H 0.05 0.86 8.02 -2.39 -0.02 0.84 16 43 H 0.08 1.58 8.09 -2.39 -0.02 1.56 16 44 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 45 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 46 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 47 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 48 H 0.12 2.22 8.06 -2.91 -0.02 2.20 16 49 H 0.08 1.82 5.65 -2.39 -0.01 1.81 16 50 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 51 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 52 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -64.04 401.45 -0.03 -64.07 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.31 Total: 29.25 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 4.52 Total: -40.55 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -6.89 Total: -99.74 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.04 -0.03 -64.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477068.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.981 kcal (2) G-P(sol) polarization free energy of solvation -64.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds