Wall clock time and date at job start Tue Mar 31 2020 11:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46863 * 2 1 4 4 C 1.52995 * 109.47346 * 120.00141 * 2 1 3 5 5 C 1.52998 * 109.47527 * 185.00233 * 4 2 1 6 6 C 1.50698 * 109.47451 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00050 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99624 * 180.02562 * 6 5 4 9 9 N 1.31524 * 119.99603 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00549 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47354 * 89.99978 * 10 8 6 12 12 H 1.48503 * 109.47362 * 209.99981 * 10 8 6 13 13 H 1.48506 * 109.47049 * 330.00026 * 10 8 6 14 14 N 1.46903 * 109.47271 * 240.00671 * 2 1 3 15 15 C 1.46894 * 111.00033 * 84.99769 * 14 2 1 16 16 C 1.53002 * 109.46993 * 180.02562 * 15 14 2 17 17 H 1.08996 * 109.47422 * 295.00269 * 16 15 14 18 18 C 1.50702 * 109.47292 * 174.99750 * 16 15 14 19 19 C 1.38233 * 119.99851 * 142.19902 * 18 16 15 20 20 C 1.38231 * 119.99600 * 179.76582 * 19 18 16 21 21 C 1.38232 * 120.00371 * 0.50744 * 20 19 18 22 22 C 1.38239 * 119.99740 * 359.75137 * 21 20 19 23 23 C 1.38228 * 120.00001 * 359.97438 * 22 21 20 24 24 N 1.46907 * 109.46957 * 55.00079 * 16 15 14 25 25 C 1.48528 * 111.00250 * 67.56097 * 24 16 15 26 26 C 1.54934 * 103.22989 * 159.72071 * 25 24 16 27 27 C 1.54600 * 102.91959 * 322.58494 * 26 25 24 28 28 C 1.47906 * 110.99766 * 184.95682 * 24 16 15 29 29 H 1.08996 * 109.47286 * 299.99312 * 1 2 3 30 30 H 1.09003 * 109.46863 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47410 * 59.99769 * 1 2 3 32 32 H 1.08998 * 109.47395 * 305.00345 * 4 2 1 33 33 H 1.09004 * 109.46884 * 65.00206 * 4 2 1 34 34 H 1.09008 * 109.46852 * 300.00408 * 5 4 2 35 35 H 1.09000 * 109.47296 * 59.99631 * 5 4 2 36 36 H 0.96999 * 119.99960 * 179.97438 * 9 8 6 37 37 H 1.00898 * 110.99898 * 208.95285 * 14 2 1 38 38 H 1.09006 * 109.47180 * 299.99980 * 15 14 2 39 39 H 1.08991 * 109.47401 * 60.00083 * 15 14 2 40 40 H 1.07996 * 120.00257 * 0.02562 * 19 18 16 41 41 H 1.08003 * 120.00088 * 180.23258 * 20 19 18 42 42 H 1.08000 * 120.00467 * 179.71749 * 21 20 19 43 43 H 1.08001 * 120.00078 * 179.97438 * 22 21 20 44 44 H 1.08004 * 119.99954 * 179.97438 * 23 22 21 45 45 H 1.09000 * 110.66622 * 278.15262 * 25 24 16 46 46 H 1.09000 * 110.66989 * 41.28618 * 25 24 16 47 47 H 1.08991 * 110.72635 * 204.22765 * 26 25 24 48 48 H 1.09003 * 110.72565 * 80.94150 * 26 25 24 49 49 H 1.08994 * 110.30844 * 263.03998 * 27 26 25 50 50 H 1.09010 * 110.30880 * 140.87184 * 27 26 25 51 51 H 1.08996 * 109.91964 * 333.50708 * 28 24 16 52 52 H 1.09006 * 109.91563 * 94.79924 * 28 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3242 2.5438 7 1 3.3688 -1.8047 3.2129 8 6 5.4185 -1.3604 2.8154 9 7 5.8570 -1.9804 3.8893 10 14 6.6265 -0.5288 1.6585 11 1 6.8311 0.8790 2.0847 12 1 7.9238 -1.2505 1.6951 13 1 6.0850 -0.5537 0.2760 14 7 2.0197 -0.6924 -1.1995 15 6 2.0825 0.2228 -2.3468 16 6 2.5951 -0.5329 -3.5745 17 1 3.6234 -0.8505 -3.4024 18 6 2.5435 0.3716 -4.7788 19 6 3.5494 0.3198 -5.7256 20 6 3.4995 1.1460 -6.8327 21 6 2.4493 2.0313 -6.9878 22 6 1.4461 2.0868 -6.0383 23 6 1.4930 1.2566 -4.9341 24 7 1.7514 -1.7120 -3.8112 25 6 0.3829 -1.3125 -4.2278 26 6 -0.1633 -2.5866 -4.9197 27 6 1.0784 -3.1390 -5.6567 28 6 2.2866 -2.5329 -4.9191 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7716 1.2054 34 1 3.9995 -1.0727 0.4258 35 1 3.8532 0.4370 1.3573 36 1 6.8076 -2.0062 4.0803 37 1 2.9173 -1.1203 -1.0288 38 1 1.0870 0.6165 -2.5525 39 1 2.7587 1.0464 -2.1182 40 1 4.3720 -0.3690 -5.6024 41 1 4.2835 1.1030 -7.5744 42 1 2.4127 2.6800 -7.8505 43 1 0.6258 2.7787 -6.1593 44 1 0.7095 1.3003 -4.1920 45 1 -0.2241 -1.0561 -3.3595 46 1 0.4222 -0.4801 -4.9304 47 1 -0.9514 -2.3329 -5.6285 48 1 -0.5235 -3.3025 -4.1808 49 1 1.0726 -2.8202 -6.6989 50 1 1.1032 -4.2270 -5.5931 51 1 2.8619 -1.9066 -5.6009 52 1 2.9162 -3.3287 -4.5210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478936.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:48 Heat of formation + Delta-G solvation = 25.586703 kcal Electronic energy + Delta-G solvation = -27435.804229 eV Core-core repulsion = 24013.545789 eV Total energy + Delta-G solvation = -3422.258441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.60025 -38.14184 -37.13232 -34.30353 -32.86903 -31.40697 -31.01565 -30.09048 -29.44765 -28.80983 -26.55046 -25.18740 -23.55332 -22.47682 -21.80535 -20.99828 -20.74313 -19.92011 -19.49467 -17.11672 -16.78689 -16.42998 -15.93126 -15.65444 -15.20581 -14.99241 -14.38519 -14.25926 -14.11007 -13.85202 -13.72334 -13.37510 -13.08430 -12.86097 -12.58697 -12.43562 -12.35774 -12.27286 -11.90517 -11.63074 -11.50064 -11.44956 -11.43792 -11.36492 -11.17293 -11.09423 -10.91592 -10.67934 -10.54170 -10.43158 -9.90336 -9.71727 -9.38901 -9.14025 -9.09696 -8.94924 -8.51223 -8.25919 -7.88297 -6.01481 -3.98697 1.09983 1.15721 3.31070 3.38554 3.41027 3.52236 4.01219 4.32362 4.46761 4.57018 4.61990 4.70558 4.74382 4.82902 4.89658 4.96254 5.10685 5.23497 5.29097 5.31056 5.32338 5.37288 5.48796 5.50934 5.65836 5.69012 5.72544 5.76637 5.77444 5.79147 5.83744 5.88410 5.92810 5.96971 6.07957 6.13480 6.17035 6.22725 6.27507 6.32243 6.37985 6.46934 6.50472 6.75962 6.80812 6.92145 6.96807 7.05875 7.34043 7.38856 7.63370 7.82673 7.93203 8.58116 9.04683 9.61333 11.12233 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012851 B = 0.003547 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.347835 B = 7891.359766 C = 8462.577558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.080 3.920 3 H 0.033 0.967 4 C -0.104 4.104 5 C -0.014 4.014 6 C -0.516 4.516 7 H 0.072 0.928 8 C 0.065 3.935 9 N -0.904 5.904 10 Si 0.880 3.120 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.267 1.267 14 N -0.666 5.666 15 C 0.072 3.928 16 C 0.113 3.887 17 H 0.088 0.912 18 C -0.109 4.109 19 C -0.109 4.109 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.106 4.106 24 N -0.471 5.471 25 C 0.023 3.977 26 C -0.122 4.122 27 C -0.128 4.128 28 C 0.024 3.976 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.014 0.986 35 H 0.006 0.994 36 H 0.262 0.738 37 H 0.349 0.651 38 H 0.069 0.931 39 H 0.029 0.971 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.084 0.916 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.069 0.931 51 H 0.047 0.953 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.596 5.434 -24.766 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.030 4.030 3 H 0.051 0.949 4 C -0.142 4.142 5 C -0.052 4.052 6 C -0.554 4.554 7 H 0.090 0.910 8 C -0.135 4.135 9 N -0.544 5.544 10 Si 0.708 3.292 11 H -0.205 1.205 12 H -0.214 1.214 13 H -0.192 1.192 14 N -0.300 5.300 15 C -0.058 4.058 16 C 0.004 3.996 17 H 0.106 0.894 18 C -0.111 4.111 19 C -0.127 4.127 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.141 4.141 23 C -0.124 4.124 24 N -0.193 5.193 25 C -0.105 4.105 26 C -0.160 4.160 27 C -0.166 4.166 28 C -0.104 4.104 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.032 0.968 35 H 0.024 0.976 36 H 0.072 0.928 37 H 0.170 0.830 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.102 0.898 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.078 0.922 50 H 0.087 0.913 51 H 0.065 0.935 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.045 4.809 -24.301 27.123 hybrid contribution 1.707 1.506 -1.100 2.528 sum -9.338 6.315 -25.400 27.789 Atomic orbital electron populations 1.21747 0.95627 1.01834 0.99868 1.21640 0.94813 0.95734 0.90794 0.94940 1.21630 0.97873 1.00179 0.94529 1.19602 0.92141 0.96016 0.97406 1.21143 0.92877 1.34074 1.07312 0.91009 1.25042 0.98416 0.95038 0.95042 1.69922 1.14536 1.43639 1.26271 0.86777 0.80663 0.79644 0.82126 1.20499 1.21435 1.19161 1.60443 1.34572 1.31651 1.03357 1.21973 0.99995 0.93387 0.90447 1.20929 0.98594 0.88812 0.91244 0.89385 1.20585 0.95154 0.97483 0.97916 1.21105 0.98255 0.99081 0.94308 1.21134 0.98496 0.96463 0.97906 1.21140 0.94716 0.98949 0.99198 1.21155 0.98973 0.99250 0.94733 1.21145 0.98148 0.95167 0.97985 1.65178 1.01310 1.15400 1.37423 1.23532 0.90803 0.96888 0.99261 1.22442 0.96899 0.97592 0.99076 1.22340 0.94818 1.00753 0.98667 1.22991 0.97338 0.97551 0.92499 0.93180 0.92147 0.94075 0.92362 0.91768 0.96776 0.97588 0.92814 0.82970 0.91293 0.95278 0.86130 0.86195 0.86296 0.86141 0.85703 0.89801 0.92708 0.91725 0.90735 0.92157 0.91269 0.93467 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 9.41 37.16 0.35 -1.53 16 2 C 0.08 1.31 2.65 -67.71 -0.18 1.13 16 3 H 0.03 0.55 7.80 -51.93 -0.40 0.15 16 4 C -0.10 -2.08 4.74 -26.73 -0.13 -2.21 16 5 C -0.01 -0.34 3.87 -27.89 -0.11 -0.45 16 6 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 7 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 8 C 0.07 1.93 5.47 -17.81 -0.10 1.83 16 9 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 10 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 14 N -0.67 -10.54 6.03 -106.73 -0.64 -11.18 16 15 C 0.07 0.97 4.40 -3.83 -0.02 0.95 16 16 C 0.11 1.39 2.30 -68.86 -0.16 1.23 16 17 H 0.09 1.16 8.02 -51.93 -0.42 0.75 16 18 C -0.11 -1.19 3.86 -104.62 -0.40 -1.60 16 19 C -0.11 -1.12 8.03 -39.59 -0.32 -1.44 16 20 C -0.12 -1.12 10.05 -39.59 -0.40 -1.51 16 21 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 22 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 23 C -0.11 -1.08 6.66 -39.59 -0.26 -1.34 16 24 N -0.47 -5.75 4.99 -223.88 -1.12 -6.87 16 25 C 0.02 0.25 5.07 -1.90 -0.01 0.24 16 26 C -0.12 -1.19 7.06 -24.87 -0.18 -1.36 16 27 C -0.13 -1.21 6.93 -25.37 -0.18 -1.39 16 28 C 0.02 0.26 6.47 -2.75 -0.02 0.25 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.01 0.33 5.48 -51.92 -0.28 0.05 16 35 H 0.01 0.14 7.57 -51.93 -0.39 -0.25 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.35 6.19 6.47 -39.29 -0.25 5.94 16 38 H 0.07 0.86 4.85 -51.93 -0.25 0.61 16 39 H 0.03 0.42 8.05 -51.93 -0.42 0.00 16 40 H 0.12 1.14 7.83 -52.49 -0.41 0.73 16 41 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 43 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 44 H 0.13 1.21 5.72 -52.48 -0.30 0.91 16 45 H 0.08 0.98 7.85 -51.93 -0.41 0.58 16 46 H 0.06 0.58 4.38 -51.93 -0.23 0.35 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 51 H 0.05 0.50 5.27 -51.93 -0.27 0.22 16 52 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 390.43 15.07 5.88 5.88 Total: -1.00 -30.70 390.43 -12.09 -42.78 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -9.09 Total: 4.89 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -3.23 Total: -25.37 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.99 Total: -45.53 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.70 -12.09 -42.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478936.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.372 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds