Wall clock time and date at job start Tue Mar 31 2020 11:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46863 * 2 1 4 4 C 1.52995 * 109.47346 * 120.00141 * 2 1 3 5 5 C 1.52998 * 109.47527 * 185.00233 * 4 2 1 6 6 C 1.50698 * 109.47451 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00050 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99624 * 180.02562 * 6 5 4 9 9 N 1.31524 * 119.99603 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00549 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47354 * 89.99978 * 10 8 6 12 12 H 1.48503 * 109.47362 * 209.99981 * 10 8 6 13 13 H 1.48506 * 109.47049 * 330.00026 * 10 8 6 14 14 N 1.46903 * 109.47271 * 240.00671 * 2 1 3 15 15 C 1.46894 * 111.00033 * 84.99769 * 14 2 1 16 16 C 1.53002 * 109.46993 * 180.02562 * 15 14 2 17 17 H 1.08996 * 109.47422 * 295.00269 * 16 15 14 18 18 C 1.50702 * 109.47292 * 174.99750 * 16 15 14 19 19 C 1.38233 * 119.99851 * 142.19902 * 18 16 15 20 20 C 1.38231 * 119.99600 * 179.76582 * 19 18 16 21 21 C 1.38232 * 120.00371 * 0.50744 * 20 19 18 22 22 C 1.38239 * 119.99740 * 359.75137 * 21 20 19 23 23 C 1.38228 * 120.00001 * 359.97438 * 22 21 20 24 24 N 1.46907 * 109.46957 * 55.00079 * 16 15 14 25 25 C 1.48528 * 111.00250 * 67.56097 * 24 16 15 26 26 C 1.54934 * 103.22989 * 159.72071 * 25 24 16 27 27 C 1.54600 * 102.91959 * 322.58494 * 26 25 24 28 28 C 1.47906 * 110.99766 * 184.95682 * 24 16 15 29 29 H 1.08996 * 109.47286 * 299.99312 * 1 2 3 30 30 H 1.09003 * 109.46863 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47410 * 59.99769 * 1 2 3 32 32 H 1.08998 * 109.47395 * 305.00345 * 4 2 1 33 33 H 1.09004 * 109.46884 * 65.00206 * 4 2 1 34 34 H 1.09008 * 109.46852 * 300.00408 * 5 4 2 35 35 H 1.09000 * 109.47296 * 59.99631 * 5 4 2 36 36 H 0.96999 * 119.99960 * 179.97438 * 9 8 6 37 37 H 1.00898 * 110.99898 * 208.95285 * 14 2 1 38 38 H 1.09006 * 109.47180 * 299.99980 * 15 14 2 39 39 H 1.08991 * 109.47401 * 60.00083 * 15 14 2 40 40 H 1.07996 * 120.00257 * 0.02562 * 19 18 16 41 41 H 1.08003 * 120.00088 * 180.23258 * 20 19 18 42 42 H 1.08000 * 120.00467 * 179.71749 * 21 20 19 43 43 H 1.08001 * 120.00078 * 179.97438 * 22 21 20 44 44 H 1.08004 * 119.99954 * 179.97438 * 23 22 21 45 45 H 1.09000 * 110.66622 * 278.15262 * 25 24 16 46 46 H 1.09000 * 110.66989 * 41.28618 * 25 24 16 47 47 H 1.08991 * 110.72635 * 204.22765 * 26 25 24 48 48 H 1.09003 * 110.72565 * 80.94150 * 26 25 24 49 49 H 1.08994 * 110.30844 * 263.03998 * 27 26 25 50 50 H 1.09010 * 110.30880 * 140.87184 * 27 26 25 51 51 H 1.08996 * 109.91964 * 333.50708 * 28 24 16 52 52 H 1.09006 * 109.91563 * 94.79924 * 28 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3242 2.5438 7 1 3.3688 -1.8047 3.2129 8 6 5.4185 -1.3604 2.8154 9 7 5.8570 -1.9804 3.8893 10 14 6.6265 -0.5288 1.6585 11 1 6.8311 0.8790 2.0847 12 1 7.9238 -1.2505 1.6951 13 1 6.0850 -0.5537 0.2760 14 7 2.0197 -0.6924 -1.1995 15 6 2.0825 0.2228 -2.3468 16 6 2.5951 -0.5329 -3.5745 17 1 3.6234 -0.8505 -3.4024 18 6 2.5435 0.3716 -4.7788 19 6 3.5494 0.3198 -5.7256 20 6 3.4995 1.1460 -6.8327 21 6 2.4493 2.0313 -6.9878 22 6 1.4461 2.0868 -6.0383 23 6 1.4930 1.2566 -4.9341 24 7 1.7514 -1.7120 -3.8112 25 6 0.3829 -1.3125 -4.2278 26 6 -0.1633 -2.5866 -4.9197 27 6 1.0784 -3.1390 -5.6567 28 6 2.2866 -2.5329 -4.9191 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7716 1.2054 34 1 3.9995 -1.0727 0.4258 35 1 3.8532 0.4370 1.3573 36 1 6.8076 -2.0062 4.0803 37 1 2.9173 -1.1203 -1.0288 38 1 1.0870 0.6165 -2.5525 39 1 2.7587 1.0464 -2.1182 40 1 4.3720 -0.3690 -5.6024 41 1 4.2835 1.1030 -7.5744 42 1 2.4127 2.6800 -7.8505 43 1 0.6258 2.7787 -6.1593 44 1 0.7095 1.3003 -4.1920 45 1 -0.2241 -1.0561 -3.3595 46 1 0.4222 -0.4801 -4.9304 47 1 -0.9514 -2.3329 -5.6285 48 1 -0.5235 -3.3025 -4.1808 49 1 1.0726 -2.8202 -6.6989 50 1 1.1032 -4.2270 -5.5931 51 1 2.8619 -1.9066 -5.6009 52 1 2.9162 -3.3287 -4.5210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478936.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:47 Heat of formation + Delta-G solvation = 7.514741 kcal Electronic energy + Delta-G solvation = -27436.587888 eV Core-core repulsion = 24013.545789 eV Total energy + Delta-G solvation = -3423.042100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.41503 -38.94286 -38.43155 -35.58097 -34.66668 -32.66285 -32.02521 -31.04625 -30.72868 -29.62544 -27.62820 -26.92987 -24.44459 -23.34343 -22.74901 -22.60307 -21.52456 -21.06435 -20.73362 -18.94702 -17.82792 -17.41009 -16.78251 -16.64920 -16.37708 -16.13107 -16.02769 -15.28845 -15.19204 -14.93458 -14.67326 -14.50187 -14.37528 -14.19265 -13.81286 -13.67921 -13.44593 -13.22974 -13.16755 -12.97947 -12.85820 -12.67057 -12.41746 -12.29243 -12.16695 -12.09648 -11.97966 -11.88828 -11.67409 -11.65208 -11.51529 -11.38580 -11.27516 -11.07788 -10.76779 -9.80296 -9.67668 -9.19004 -9.07992 -8.29984 -6.33408 0.38652 0.45856 1.32615 1.34670 1.46232 2.34234 2.79937 3.04866 3.11964 3.31180 3.70053 3.79539 3.93742 3.96610 4.06701 4.11150 4.13647 4.23667 4.25271 4.32601 4.39790 4.47357 4.49614 4.57712 4.64043 4.69470 4.72191 4.75618 4.85641 4.89015 4.93587 4.97675 5.02158 5.03360 5.05762 5.08476 5.11946 5.14066 5.16278 5.26841 5.36419 5.45280 5.52596 5.55342 5.57636 5.59800 5.63432 5.67518 6.07847 6.11682 6.14166 6.29354 6.36660 6.56143 6.74793 7.30705 8.87188 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012851 B = 0.003547 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.347835 B = 7891.359766 C = 8462.577558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.087 3.913 3 H 0.034 0.966 4 C -0.096 4.096 5 C -0.007 4.007 6 C -0.530 4.530 7 H 0.030 0.970 8 C 0.004 3.996 9 N -0.952 5.952 10 Si 0.951 3.049 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.247 1.247 14 N -0.669 5.669 15 C 0.077 3.923 16 C 0.119 3.881 17 H 0.072 0.928 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.115 4.115 24 N -0.490 5.490 25 C 0.025 3.975 26 C -0.120 4.120 27 C -0.123 4.123 28 C 0.023 3.977 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.020 0.980 35 H 0.010 0.990 36 H 0.266 0.734 37 H 0.336 0.664 38 H 0.081 0.919 39 H 0.022 0.978 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.127 0.873 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.081 0.919 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.072 0.928 51 H 0.051 0.949 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.120 7.242 -27.975 30.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.022 4.022 3 H 0.052 0.948 4 C -0.134 4.134 5 C -0.045 4.045 6 C -0.568 4.568 7 H 0.048 0.952 8 C -0.193 4.193 9 N -0.593 5.593 10 Si 0.775 3.225 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.171 1.171 14 N -0.301 5.301 15 C -0.053 4.053 16 C 0.010 3.990 17 H 0.090 0.910 18 C -0.121 4.121 19 C -0.141 4.141 20 C -0.144 4.144 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.134 4.134 24 N -0.212 5.212 25 C -0.102 4.102 26 C -0.158 4.158 27 C -0.161 4.161 28 C -0.105 4.105 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.029 0.971 36 H 0.075 0.925 37 H 0.155 0.845 38 H 0.099 0.901 39 H 0.040 0.960 40 H 0.139 0.861 41 H 0.156 0.844 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.145 0.855 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.084 0.916 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.069 0.931 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.600 6.624 -27.522 30.592 hybrid contribution 1.832 0.908 -0.049 2.045 sum -9.767 7.532 -27.571 30.205 Atomic orbital electron populations 1.21666 0.93493 1.01876 1.01243 1.21541 0.96404 0.94992 0.89278 0.94833 1.21492 0.95409 0.99934 0.96531 1.19512 0.94634 0.95284 0.95043 1.21501 0.92637 1.34115 1.08513 0.95160 1.26025 1.00652 0.95759 0.96856 1.70079 1.15249 1.45457 1.28523 0.85642 0.77769 0.78634 0.80469 1.19389 1.20933 1.17060 1.60508 1.33656 1.32247 1.03705 1.21991 1.00549 0.92814 0.89933 1.20745 0.97630 0.89148 0.91477 0.90957 1.20452 0.96064 0.97930 0.97645 1.21216 0.98287 0.99718 0.94848 1.21401 0.99185 0.96037 0.97790 1.21477 0.94142 0.98788 0.99750 1.21440 0.99649 0.99090 0.94204 1.21224 0.98025 0.95445 0.98681 1.65133 1.01994 1.15693 1.38358 1.23505 0.89982 0.97657 0.99060 1.22438 0.97369 0.96819 0.99147 1.22322 0.93932 1.00921 0.98955 1.22990 0.97924 0.97218 0.92355 0.92329 0.92776 0.92166 0.92816 0.93112 0.96174 0.97139 0.92541 0.84461 0.90098 0.95977 0.86122 0.84400 0.83973 0.84121 0.85531 0.90783 0.92048 0.90054 0.91615 0.91096 0.90876 0.93110 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.31 9.41 71.98 0.68 -2.63 16 2 C 0.09 2.79 2.65 44.91 0.12 2.91 16 3 H 0.03 1.08 7.80 -2.39 -0.02 1.06 16 4 C -0.10 -3.85 4.74 30.59 0.15 -3.70 16 5 C -0.01 -0.34 3.87 29.85 0.12 -0.23 16 6 C -0.53 -31.42 9.66 25.60 0.25 -31.17 16 7 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 8 C 0.00 0.21 5.47 84.65 0.46 0.68 16 9 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16 10 Si 0.95 45.34 27.47 68.60 1.88 47.22 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 13 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 14 N -0.67 -20.67 6.03 -491.59 -2.97 -23.63 16 15 C 0.08 1.97 4.40 86.30 0.38 2.35 16 16 C 0.12 2.84 2.30 44.17 0.10 2.94 16 17 H 0.07 1.91 8.02 -2.39 -0.02 1.90 16 18 C -0.12 -2.43 3.86 -19.87 -0.08 -2.51 16 19 C -0.12 -2.33 8.03 22.27 0.18 -2.15 16 20 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 21 C -0.12 -1.77 10.05 22.27 0.22 -1.55 16 22 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 23 C -0.12 -2.10 6.66 22.27 0.15 -1.96 16 24 N -0.49 -11.61 4.99 -862.23 -4.30 -15.91 16 25 C 0.03 0.51 5.07 86.65 0.44 0.95 16 26 C -0.12 -2.13 7.06 31.80 0.22 -1.91 16 27 C -0.12 -2.15 6.93 31.47 0.22 -1.93 16 28 C 0.02 0.48 6.47 86.44 0.56 1.04 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.37 7.45 -2.39 -0.02 1.36 16 32 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.02 0.94 5.48 -2.38 -0.01 0.93 16 35 H 0.01 0.48 7.57 -2.39 -0.02 0.47 16 36 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 37 H 0.34 11.83 6.47 -89.70 -0.58 11.25 16 38 H 0.08 1.88 4.85 -2.38 -0.01 1.87 16 39 H 0.02 0.61 8.05 -2.39 -0.02 0.59 16 40 H 0.12 2.20 7.83 -2.91 -0.02 2.17 16 41 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 43 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.13 2.19 5.72 -2.91 -0.02 2.17 16 45 H 0.07 1.64 7.85 -2.39 -0.02 1.62 16 46 H 0.06 1.18 4.38 -2.39 -0.01 1.17 16 47 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 51 H 0.05 1.03 5.27 -2.39 -0.01 1.01 16 52 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -67.22 390.43 -0.23 -67.45 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.25 Total: 28.01 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 4.61 Total: -42.33 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -6.97 Total: -100.35 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.22 kcal Total: -67.22 -0.23 -67.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478936.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.960 kcal (2) G-P(sol) polarization free energy of solvation -67.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds