Wall clock time and date at job start Tue Mar 31 2020 11:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46844 * 2 1 4 4 C 1.52994 * 109.47649 * 239.99429 * 2 1 3 5 5 C 1.52993 * 109.47377 * 174.99680 * 4 2 1 6 6 C 1.50706 * 109.47386 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99637 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99897 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00273 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99798 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46648 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47014 * 119.99327 * 10 8 6 13 13 H 1.48500 * 109.46954 * 239.99942 * 10 8 6 14 14 N 1.46903 * 109.46990 * 119.99154 * 2 1 3 15 15 C 1.46900 * 111.00533 * 275.00535 * 14 2 1 16 16 C 1.53001 * 109.47271 * 179.97438 * 15 14 2 17 17 H 1.09001 * 109.46989 * 294.99705 * 16 15 14 18 18 C 1.50703 * 109.46821 * 174.99866 * 16 15 14 19 19 C 1.38233 * 119.99579 * 142.30290 * 18 16 15 20 20 C 1.38240 * 119.99618 * 179.76528 * 19 18 16 21 21 C 1.38235 * 120.00094 * 0.50506 * 20 19 18 22 22 C 1.38237 * 119.99764 * 359.74926 * 21 20 19 23 23 C 1.38233 * 120.00414 * 359.97438 * 22 21 20 24 24 N 1.46901 * 109.46947 * 55.00121 * 16 15 14 25 25 C 1.48525 * 111.00193 * 67.66486 * 24 16 15 26 26 C 1.54939 * 103.22967 * 159.71919 * 25 24 16 27 27 C 1.54594 * 102.91891 * 322.58744 * 26 25 24 28 28 C 1.47904 * 110.99617 * 185.05966 * 24 16 15 29 29 H 1.08999 * 109.47090 * 300.00199 * 1 2 3 30 30 H 1.08999 * 109.46677 * 60.00613 * 1 2 3 31 31 H 1.09004 * 109.46844 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46701 * 55.00056 * 4 2 1 33 33 H 1.09001 * 109.47176 * 295.00060 * 4 2 1 34 34 H 1.09003 * 109.46898 * 60.00496 * 5 4 2 35 35 H 1.08998 * 109.47505 * 300.00777 * 5 4 2 36 36 H 0.97007 * 119.99620 * 180.02562 * 9 8 6 37 37 H 1.00896 * 110.99740 * 151.04461 * 14 2 1 38 38 H 1.09005 * 109.46903 * 300.00071 * 15 14 2 39 39 H 1.08997 * 109.46939 * 59.99822 * 15 14 2 40 40 H 1.07993 * 120.00220 * 359.97438 * 19 18 16 41 41 H 1.08003 * 119.99760 * 180.23198 * 20 19 18 42 42 H 1.07998 * 120.00133 * 179.72069 * 21 20 19 43 43 H 1.07996 * 119.99667 * 179.97438 * 22 21 20 44 44 H 1.07991 * 120.00471 * 179.97438 * 23 22 21 45 45 H 1.09004 * 110.66967 * 278.15468 * 25 24 16 46 46 H 1.09000 * 110.67101 * 41.28244 * 25 24 16 47 47 H 1.08992 * 110.72620 * 204.22817 * 26 25 24 48 48 H 1.09004 * 110.72438 * 80.94104 * 26 25 24 49 49 H 1.09004 * 110.30738 * 263.03652 * 27 26 25 50 50 H 1.09000 * 110.31310 * 140.87214 * 27 26 25 51 51 H 1.09001 * 109.91900 * 333.50804 * 28 24 16 52 52 H 1.09006 * 109.91589 * 94.80542 * 28 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 6 4.0673 -1.3233 -2.5442 7 1 3.3689 -1.8039 -3.2133 8 6 5.4186 -1.3601 -2.8154 9 7 6.2691 -0.7753 -2.0004 10 14 6.0413 -2.2396 -4.3414 11 1 4.8913 -2.8104 -5.0875 12 1 6.7646 -1.2749 -5.2082 13 1 6.9629 -3.3330 -3.9410 14 7 2.0197 -0.6923 1.1996 15 6 2.0824 0.2228 2.3470 16 6 2.5949 -0.5329 3.5747 17 1 1.8734 -1.2998 3.8566 18 6 2.7759 0.4314 4.7186 19 6 2.4656 0.0405 6.0077 20 6 2.6362 0.9234 7.0576 21 6 3.1073 2.2005 6.8171 22 6 3.4127 2.5931 5.5273 23 6 3.2475 1.7084 4.4781 24 7 3.8828 -1.1647 3.2583 25 6 4.9398 -0.1426 3.0481 26 6 6.2513 -0.9404 3.2577 27 6 5.8881 -1.9063 4.4089 28 6 4.3515 -2.0042 4.3821 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6055 -0.2618 -2.1369 33 1 1.7518 -1.7716 -1.2054 34 1 3.9995 -1.0727 -0.4257 35 1 3.8532 0.4370 -1.3572 36 1 7.2198 -0.8009 -2.1915 37 1 2.9172 -1.1204 1.0289 38 1 2.7588 1.0464 2.1183 39 1 1.0870 0.6165 2.5525 40 1 2.0930 -0.9557 6.1949 41 1 2.3973 0.6167 8.0652 42 1 3.2364 2.8917 7.6368 43 1 3.7804 3.5910 5.3394 44 1 3.4857 2.0152 3.4704 45 1 4.8911 0.2587 2.0358 46 1 4.8539 0.6567 3.7843 47 1 7.0637 -0.2765 3.5530 48 1 6.5133 -1.4954 2.3568 49 1 6.2248 -1.5010 5.3631 50 1 6.3328 -2.8862 4.2352 51 1 3.9393 -1.6327 5.3203 52 1 4.0482 -3.0392 4.2242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478937.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:50 Heat of formation + Delta-G solvation = 20.887539 kcal Electronic energy + Delta-G solvation = -27716.211705 eV Core-core repulsion = 24293.749493 eV Total energy + Delta-G solvation = -3422.462212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.48416 -38.02556 -36.90538 -34.14175 -32.85782 -31.28584 -30.76894 -29.91782 -29.05903 -28.55439 -26.47671 -24.94748 -23.38861 -22.39188 -21.66974 -21.22269 -20.54185 -19.71119 -19.36274 -16.93778 -16.39002 -16.25342 -15.81073 -15.47030 -14.96154 -14.80514 -14.52005 -14.44837 -13.93191 -13.75705 -13.39256 -13.16427 -12.81340 -12.59828 -12.51769 -12.39600 -12.16958 -12.00196 -11.66953 -11.42698 -11.34951 -11.32522 -11.21456 -11.13007 -10.92930 -10.88548 -10.75223 -10.68048 -10.40840 -10.35903 -10.09120 -9.66601 -9.18581 -8.99141 -8.94444 -8.83310 -8.29353 -8.20458 -7.74416 -5.94703 -3.95629 1.20945 1.26558 3.34231 3.41770 3.46344 3.63344 4.16764 4.45890 4.50831 4.72726 4.83863 4.85814 4.89777 4.96822 5.06453 5.15507 5.30141 5.38189 5.41654 5.42915 5.49716 5.51112 5.61160 5.71210 5.81845 5.84322 5.88731 5.89470 5.93564 5.98340 6.02512 6.04345 6.12144 6.19668 6.26815 6.31335 6.35610 6.38470 6.43703 6.47012 6.54295 6.60016 6.65084 6.87015 7.01141 7.09004 7.17894 7.21013 7.68184 7.72327 7.91097 8.04188 8.22194 8.50009 9.10887 9.67842 11.16272 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014159 B = 0.003732 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.100071 B = 7500.854763 C = 8605.370706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.033 0.967 4 C -0.114 4.114 5 C 0.021 3.979 6 C -0.516 4.516 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.893 5.893 10 Si 0.888 3.112 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 N -0.679 5.679 15 C 0.074 3.926 16 C 0.115 3.885 17 H 0.094 0.906 18 C -0.108 4.108 19 C -0.109 4.109 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.105 4.105 24 N -0.490 5.490 25 C 0.019 3.981 26 C -0.122 4.122 27 C -0.128 4.128 28 C 0.031 3.969 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.020 0.980 35 H 0.009 0.991 36 H 0.258 0.742 37 H 0.365 0.635 38 H 0.027 0.973 39 H 0.067 0.933 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.126 0.874 45 H 0.086 0.914 46 H 0.056 0.944 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.059 0.941 50 H 0.069 0.931 51 H 0.048 0.952 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.775 4.003 19.046 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.051 0.949 4 C -0.151 4.151 5 C -0.016 4.016 6 C -0.554 4.554 7 H 0.072 0.928 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.716 3.284 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.211 1.211 14 N -0.316 5.316 15 C -0.056 4.056 16 C 0.006 3.994 17 H 0.112 0.888 18 C -0.110 4.110 19 C -0.128 4.128 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.124 4.124 24 N -0.212 5.212 25 C -0.108 4.108 26 C -0.160 4.160 27 C -0.166 4.166 28 C -0.097 4.097 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.027 0.973 36 H 0.067 0.933 37 H 0.190 0.810 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.144 0.856 45 H 0.104 0.896 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.077 0.923 50 H 0.088 0.912 51 H 0.066 0.934 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.287 3.430 18.724 20.047 hybrid contribution 1.373 0.661 -0.234 1.542 sum -4.914 4.091 18.490 19.564 Atomic orbital electron populations 1.21789 0.96067 1.01583 0.99903 1.21584 0.94307 0.95911 0.90993 0.94936 1.21810 0.99724 0.99402 0.94213 1.19118 0.88776 0.96619 0.97053 1.21274 0.91896 1.33997 1.08232 0.92784 1.24991 0.97100 0.95660 0.96570 1.69973 1.02144 1.44278 1.36890 0.86597 0.78846 0.79501 0.83419 1.19798 1.21179 1.21076 1.60496 1.36040 1.31522 1.03535 1.21934 0.99277 0.93704 0.90729 1.20936 0.92950 0.94089 0.91381 0.88757 1.20615 0.99209 0.95463 0.95748 1.21070 0.99978 0.99458 0.92257 1.21111 1.00187 0.94076 0.98823 1.21125 0.99766 0.96368 0.96835 1.21166 1.00399 0.99586 0.92916 1.21220 0.98508 0.93148 0.99514 1.65113 1.01487 1.17843 1.36722 1.23587 0.90693 0.94454 1.02092 1.22440 0.96729 0.97776 0.99046 1.22354 0.95367 1.00343 0.98563 1.22911 0.94940 0.98727 0.93114 0.93985 0.93277 0.92424 0.93040 0.92531 0.96167 0.97268 0.93271 0.81046 0.95484 0.91463 0.86195 0.86315 0.86386 0.86162 0.85591 0.89593 0.92586 0.91628 0.89990 0.92251 0.91238 0.93421 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.42 37.16 0.35 -1.71 16 2 C 0.08 1.46 2.65 -67.71 -0.18 1.28 16 3 H 0.03 0.61 7.80 -51.93 -0.40 0.20 16 4 C -0.11 -2.40 4.74 -26.74 -0.13 -2.53 16 5 C 0.02 0.55 4.80 -27.88 -0.13 0.42 16 6 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 7 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 N -0.68 -11.74 6.30 -106.72 -0.67 -12.41 16 15 C 0.07 1.08 4.45 -3.82 -0.02 1.07 16 16 C 0.12 1.53 2.36 -68.86 -0.16 1.37 16 17 H 0.09 1.26 8.02 -51.93 -0.42 0.84 16 18 C -0.11 -1.28 3.86 -104.62 -0.40 -1.69 16 19 C -0.11 -1.16 8.04 -39.58 -0.32 -1.47 16 20 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 21 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 22 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 23 C -0.11 -1.24 6.66 -39.58 -0.26 -1.51 16 24 N -0.49 -7.05 4.33 -223.88 -0.97 -8.02 16 25 C 0.02 0.28 5.07 -1.90 -0.01 0.27 16 26 C -0.12 -1.73 7.06 -24.87 -0.18 -1.90 16 27 C -0.13 -1.57 6.93 -25.38 -0.18 -1.74 16 28 C 0.03 0.39 6.47 -2.75 -0.02 0.37 16 29 H 0.04 0.58 7.45 -51.93 -0.39 0.20 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.02 0.54 6.43 -51.93 -0.33 0.21 16 35 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.37 7.21 5.61 -39.29 -0.22 6.99 16 38 H 0.03 0.42 5.47 -51.93 -0.28 0.13 16 39 H 0.07 0.95 7.44 -51.93 -0.39 0.56 16 40 H 0.12 1.13 7.82 -52.49 -0.41 0.72 16 41 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.13 1.54 5.72 -52.49 -0.30 1.24 16 45 H 0.09 1.49 7.85 -51.93 -0.41 1.09 16 46 H 0.06 0.77 4.38 -51.93 -0.23 0.54 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.05 0.55 5.27 -51.93 -0.27 0.28 16 52 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -29.42 392.92 -12.34 -41.76 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -9.09 Total: 7.77 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -3.24 Total: -26.05 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -0.91 Total: -46.24 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.42 -12.34 -41.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478937.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.648 kcal (2) G-P(sol) polarization free energy of solvation -29.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds