Wall clock time and date at job start Tue Mar 31 2020 11:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46844 * 2 1 4 4 C 1.52994 * 109.47649 * 239.99429 * 2 1 3 5 5 C 1.52993 * 109.47377 * 174.99680 * 4 2 1 6 6 C 1.50706 * 109.47386 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99637 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99897 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00273 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99798 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46648 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47014 * 119.99327 * 10 8 6 13 13 H 1.48500 * 109.46954 * 239.99942 * 10 8 6 14 14 N 1.46903 * 109.46990 * 119.99154 * 2 1 3 15 15 C 1.46900 * 111.00533 * 275.00535 * 14 2 1 16 16 C 1.53001 * 109.47271 * 179.97438 * 15 14 2 17 17 H 1.09001 * 109.46989 * 294.99705 * 16 15 14 18 18 C 1.50703 * 109.46821 * 174.99866 * 16 15 14 19 19 C 1.38233 * 119.99579 * 142.30290 * 18 16 15 20 20 C 1.38240 * 119.99618 * 179.76528 * 19 18 16 21 21 C 1.38235 * 120.00094 * 0.50506 * 20 19 18 22 22 C 1.38237 * 119.99764 * 359.74926 * 21 20 19 23 23 C 1.38233 * 120.00414 * 359.97438 * 22 21 20 24 24 N 1.46901 * 109.46947 * 55.00121 * 16 15 14 25 25 C 1.48525 * 111.00193 * 67.66486 * 24 16 15 26 26 C 1.54939 * 103.22967 * 159.71919 * 25 24 16 27 27 C 1.54594 * 102.91891 * 322.58744 * 26 25 24 28 28 C 1.47904 * 110.99617 * 185.05966 * 24 16 15 29 29 H 1.08999 * 109.47090 * 300.00199 * 1 2 3 30 30 H 1.08999 * 109.46677 * 60.00613 * 1 2 3 31 31 H 1.09004 * 109.46844 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46701 * 55.00056 * 4 2 1 33 33 H 1.09001 * 109.47176 * 295.00060 * 4 2 1 34 34 H 1.09003 * 109.46898 * 60.00496 * 5 4 2 35 35 H 1.08998 * 109.47505 * 300.00777 * 5 4 2 36 36 H 0.97007 * 119.99620 * 180.02562 * 9 8 6 37 37 H 1.00896 * 110.99740 * 151.04461 * 14 2 1 38 38 H 1.09005 * 109.46903 * 300.00071 * 15 14 2 39 39 H 1.08997 * 109.46939 * 59.99822 * 15 14 2 40 40 H 1.07993 * 120.00220 * 359.97438 * 19 18 16 41 41 H 1.08003 * 119.99760 * 180.23198 * 20 19 18 42 42 H 1.07998 * 120.00133 * 179.72069 * 21 20 19 43 43 H 1.07996 * 119.99667 * 179.97438 * 22 21 20 44 44 H 1.07991 * 120.00471 * 179.97438 * 23 22 21 45 45 H 1.09004 * 110.66967 * 278.15468 * 25 24 16 46 46 H 1.09000 * 110.67101 * 41.28244 * 25 24 16 47 47 H 1.08992 * 110.72620 * 204.22817 * 26 25 24 48 48 H 1.09004 * 110.72438 * 80.94104 * 26 25 24 49 49 H 1.09004 * 110.30738 * 263.03652 * 27 26 25 50 50 H 1.09000 * 110.31310 * 140.87214 * 27 26 25 51 51 H 1.09001 * 109.91900 * 333.50804 * 28 24 16 52 52 H 1.09006 * 109.91589 * 94.80542 * 28 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 6 4.0673 -1.3233 -2.5442 7 1 3.3689 -1.8039 -3.2133 8 6 5.4186 -1.3601 -2.8154 9 7 6.2691 -0.7753 -2.0004 10 14 6.0413 -2.2396 -4.3414 11 1 4.8913 -2.8104 -5.0875 12 1 6.7646 -1.2749 -5.2082 13 1 6.9629 -3.3330 -3.9410 14 7 2.0197 -0.6923 1.1996 15 6 2.0824 0.2228 2.3470 16 6 2.5949 -0.5329 3.5747 17 1 1.8734 -1.2998 3.8566 18 6 2.7759 0.4314 4.7186 19 6 2.4656 0.0405 6.0077 20 6 2.6362 0.9234 7.0576 21 6 3.1073 2.2005 6.8171 22 6 3.4127 2.5931 5.5273 23 6 3.2475 1.7084 4.4781 24 7 3.8828 -1.1647 3.2583 25 6 4.9398 -0.1426 3.0481 26 6 6.2513 -0.9404 3.2577 27 6 5.8881 -1.9063 4.4089 28 6 4.3515 -2.0042 4.3821 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6055 -0.2618 -2.1369 33 1 1.7518 -1.7716 -1.2054 34 1 3.9995 -1.0727 -0.4257 35 1 3.8532 0.4370 -1.3572 36 1 7.2198 -0.8009 -2.1915 37 1 2.9172 -1.1204 1.0289 38 1 2.7588 1.0464 2.1183 39 1 1.0870 0.6165 2.5525 40 1 2.0930 -0.9557 6.1949 41 1 2.3973 0.6167 8.0652 42 1 3.2364 2.8917 7.6368 43 1 3.7804 3.5910 5.3394 44 1 3.4857 2.0152 3.4704 45 1 4.8911 0.2587 2.0358 46 1 4.8539 0.6567 3.7843 47 1 7.0637 -0.2765 3.5530 48 1 6.5133 -1.4954 2.3568 49 1 6.2248 -1.5010 5.3631 50 1 6.3328 -2.8862 4.2352 51 1 3.9393 -1.6327 5.3203 52 1 4.0482 -3.0392 4.2242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478937.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:49 Heat of formation + Delta-G solvation = 4.904993 kcal Electronic energy + Delta-G solvation = -27716.904760 eV Core-core repulsion = 24293.749493 eV Total energy + Delta-G solvation = -3423.155267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.46619 -38.98865 -38.35954 -35.58916 -34.66675 -32.43378 -31.98315 -30.97855 -30.59730 -29.65789 -27.68228 -26.83953 -24.43720 -23.46725 -22.93646 -22.67469 -21.60461 -20.99625 -20.72700 -18.50693 -17.80226 -17.34440 -17.05916 -16.53520 -16.47001 -16.28045 -15.87946 -15.57027 -15.00122 -14.83931 -14.55942 -14.39030 -14.25369 -14.15281 -13.72070 -13.64735 -13.55866 -13.15907 -13.07838 -12.96444 -12.84882 -12.64816 -12.40995 -12.31876 -12.27389 -12.17171 -12.09216 -11.97831 -11.86692 -11.60403 -11.51339 -11.43449 -11.23403 -10.91137 -10.52202 -9.79758 -9.67512 -9.33135 -9.11819 -8.16884 -6.27066 0.39581 0.46744 1.38958 1.39613 1.52622 2.41920 2.79913 3.09507 3.15660 3.30710 3.73593 3.76178 3.90767 3.96805 4.08718 4.11175 4.12500 4.21670 4.26853 4.33747 4.38934 4.40784 4.52427 4.59723 4.61314 4.66620 4.70653 4.78656 4.80780 4.89033 4.93121 4.98493 5.01996 5.04883 5.06167 5.08377 5.10792 5.13271 5.20520 5.26769 5.31676 5.46960 5.54425 5.56202 5.60666 5.64208 5.74467 5.87249 6.00230 6.08970 6.11276 6.28356 6.36498 6.62428 6.88688 7.41193 8.94066 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014159 B = 0.003732 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.100071 B = 7500.854763 C = 8605.370706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.085 3.915 3 H 0.021 0.979 4 C -0.101 4.101 5 C 0.033 3.967 6 C -0.541 4.541 7 H 0.055 0.945 8 C 0.004 3.996 9 N -0.926 5.926 10 Si 0.960 3.040 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.278 1.278 14 N -0.680 5.680 15 C 0.077 3.923 16 C 0.123 3.877 17 H 0.096 0.904 18 C -0.117 4.117 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.129 4.129 23 C -0.122 4.122 24 N -0.511 5.511 25 C 0.028 3.972 26 C -0.124 4.124 27 C -0.120 4.120 28 C 0.032 3.968 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.053 0.947 34 H -0.001 1.001 35 H -0.021 1.021 36 H 0.261 0.739 37 H 0.349 0.651 38 H 0.014 0.986 39 H 0.078 0.922 40 H 0.133 0.867 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.110 0.890 45 H 0.045 0.955 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.049 0.951 49 H 0.079 0.921 50 H 0.074 0.926 51 H 0.063 0.937 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.701 3.723 20.823 22.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.025 4.025 3 H 0.039 0.961 4 C -0.139 4.139 5 C -0.004 4.004 6 C -0.579 4.579 7 H 0.074 0.926 8 C -0.194 4.194 9 N -0.566 5.566 10 Si 0.785 3.215 11 H -0.188 1.188 12 H -0.204 1.204 13 H -0.204 1.204 14 N -0.314 5.314 15 C -0.053 4.053 16 C 0.015 3.985 17 H 0.115 0.885 18 C -0.120 4.120 19 C -0.132 4.132 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.147 4.147 23 C -0.141 4.141 24 N -0.233 5.233 25 C -0.100 4.100 26 C -0.162 4.162 27 C -0.158 4.158 28 C -0.096 4.096 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.017 0.983 35 H -0.003 1.003 36 H 0.070 0.930 37 H 0.170 0.830 38 H 0.032 0.968 39 H 0.096 0.904 40 H 0.151 0.849 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.128 0.872 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.096 0.904 48 H 0.068 0.932 49 H 0.097 0.903 50 H 0.092 0.908 51 H 0.082 0.918 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.240 3.157 20.507 21.975 hybrid contribution 1.671 0.806 -0.751 2.002 sum -5.569 3.963 19.756 20.905 Atomic orbital electron populations 1.21690 0.93201 1.02099 1.01328 1.21538 0.96413 0.94636 0.89865 0.96139 1.21633 0.96338 0.99691 0.96237 1.18932 0.91966 0.94074 0.95428 1.21678 0.92529 1.34542 1.09181 0.92637 1.25900 0.97322 0.96334 0.99886 1.70109 1.02529 1.45226 1.38699 0.85477 0.78389 0.78331 0.79322 1.18806 1.20421 1.20416 1.60599 1.34791 1.31999 1.03984 1.21968 0.99607 0.93143 0.90540 1.20793 0.92289 0.94291 0.91168 0.88548 1.20441 1.00562 0.95134 0.95819 1.21246 0.99793 1.00394 0.91780 1.21450 0.99031 0.93736 0.99741 1.21470 0.98582 0.96918 0.96998 1.21382 1.00265 0.99973 0.93094 1.21181 0.99759 0.93808 0.99368 1.65038 1.01850 1.18151 1.38299 1.23391 0.91428 0.95068 1.00079 1.22413 0.96864 0.98239 0.98733 1.22330 0.95167 0.99999 0.98310 1.22947 0.95162 0.98373 0.93069 0.92345 0.92096 0.92296 0.92669 0.92850 0.98305 1.00262 0.93014 0.82987 0.96781 0.90390 0.84921 0.83672 0.83844 0.84885 0.87248 0.93641 0.91294 0.90424 0.93238 0.90269 0.90764 0.91843 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.42 71.98 0.68 -2.98 16 2 C 0.09 3.12 2.65 44.91 0.12 3.24 16 3 H 0.02 0.80 7.80 -2.38 -0.02 0.78 16 4 C -0.10 -4.40 4.74 30.59 0.15 -4.26 16 5 C 0.03 1.80 4.80 29.85 0.14 1.94 16 6 C -0.54 -31.75 9.11 25.60 0.23 -31.51 16 7 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 8 C 0.00 0.21 5.46 84.65 0.46 0.68 16 9 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 10 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 11 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 N -0.68 -24.37 6.30 -491.56 -3.10 -27.46 16 15 C 0.08 2.35 4.45 86.30 0.38 2.73 16 16 C 0.12 3.29 2.36 44.17 0.10 3.40 16 17 H 0.10 2.52 8.02 -2.39 -0.02 2.50 16 18 C -0.12 -2.70 3.86 -19.86 -0.08 -2.77 16 19 C -0.11 -2.15 8.04 22.27 0.18 -1.97 16 20 C -0.12 -1.94 10.05 22.27 0.22 -1.71 16 21 C -0.12 -1.96 10.05 22.27 0.22 -1.74 16 22 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 23 C -0.12 -2.88 6.66 22.27 0.15 -2.73 16 24 N -0.51 -15.23 4.33 -862.23 -3.74 -18.97 16 25 C 0.03 0.88 5.07 86.65 0.44 1.32 16 26 C -0.12 -3.69 7.06 31.80 0.22 -3.47 16 27 C -0.12 -2.85 6.93 31.47 0.22 -2.64 16 28 C 0.03 0.78 6.47 86.45 0.56 1.34 16 29 H 0.06 1.52 7.45 -2.39 -0.02 1.50 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 31 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.00 -0.07 6.43 -2.39 -0.02 -0.09 16 35 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 36 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 37 H 0.35 14.68 5.61 -89.70 -0.50 14.18 16 38 H 0.01 0.47 5.47 -2.38 -0.01 0.46 16 39 H 0.08 2.18 7.44 -2.39 -0.02 2.16 16 40 H 0.13 2.12 7.82 -2.91 -0.02 2.10 16 41 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 43 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 44 H 0.11 2.87 5.72 -2.92 -0.02 2.85 16 45 H 0.05 1.77 7.85 -2.38 -0.02 1.75 16 46 H 0.07 1.98 4.38 -2.39 -0.01 1.97 16 47 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 49 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 50 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.06 1.35 5.27 -2.39 -0.01 1.34 16 52 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -65.33 392.92 0.49 -64.85 By element: Atomic # 1 Polarization: 33.81 SS G_CDS: 0.38 Total: 34.19 kcal Atomic # 6 Polarization: -48.05 SS G_CDS: 4.63 Total: -43.41 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -6.55 Total: -103.03 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -65.33 0.49 -64.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478937.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.753 kcal (2) G-P(sol) polarization free energy of solvation -65.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds