Wall clock time and date at job start Tue Mar 31 2020 11:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52997 * 109.47366 * 119.99951 * 2 1 3 5 5 C 1.52999 * 109.47415 * 185.00278 * 4 2 1 6 6 C 1.50695 * 109.47057 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00538 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99661 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00186 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00030 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47297 * 89.99863 * 10 8 6 12 12 H 1.48503 * 109.47261 * 330.00044 * 10 8 6 13 13 H 1.48500 * 109.47454 * 210.00037 * 10 8 6 14 14 N 1.46898 * 109.47362 * 240.00165 * 2 1 3 15 15 C 1.46905 * 111.00044 * 84.99436 * 14 2 1 16 16 C 1.53000 * 109.46941 * 179.97438 * 15 14 2 17 17 H 1.08995 * 110.29225 * 304.33051 * 16 15 14 18 18 C 1.54262 * 110.32167 * 66.45890 * 16 15 14 19 19 C 1.54384 * 105.06019 * 118.89407 * 18 16 15 20 20 N 1.48560 * 104.59448 * 23.84892 * 19 18 16 21 21 C 1.46899 * 111.00102 * 200.95849 * 20 19 18 22 22 C 1.50698 * 109.47373 * 290.13278 * 21 20 19 23 23 C 1.38237 * 119.99679 * 269.72457 * 22 21 20 24 24 C 1.38239 * 119.99879 * 179.76490 * 23 22 21 25 25 C 1.38239 * 119.99806 * 0.50906 * 24 23 22 26 26 C 1.38232 * 120.00009 * 359.74353 * 25 24 23 27 27 C 1.38231 * 120.00309 * 0.02562 * 26 25 24 28 28 C 1.48557 * 104.22545 * 320.52150 * 20 19 18 29 29 H 1.08998 * 109.47589 * 299.99533 * 1 2 3 30 30 H 1.09000 * 109.47210 * 60.00116 * 1 2 3 31 31 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47302 * 65.00142 * 4 2 1 33 33 H 1.08998 * 109.46899 * 305.00279 * 4 2 1 34 34 H 1.09002 * 109.46997 * 59.99676 * 5 4 2 35 35 H 1.09000 * 109.46625 * 300.00101 * 5 4 2 36 36 H 0.97001 * 119.99697 * 359.97438 * 9 8 6 37 37 H 1.00900 * 110.99959 * 321.04782 * 14 2 1 38 38 H 1.09001 * 109.47464 * 300.00509 * 15 14 2 39 39 H 1.09004 * 109.46805 * 60.00251 * 15 14 2 40 40 H 1.08993 * 110.32495 * 237.78561 * 18 16 15 41 41 H 1.08996 * 110.32329 * 359.89836 * 18 16 15 42 42 H 1.08998 * 110.41209 * 142.63000 * 19 18 16 43 43 H 1.09008 * 110.40779 * 265.07408 * 19 18 16 44 44 H 1.09003 * 109.46908 * 50.12969 * 21 20 19 45 45 H 1.08999 * 109.47291 * 170.12800 * 21 20 19 46 46 H 1.07995 * 120.00086 * 359.97438 * 23 22 21 47 47 H 1.07995 * 119.99870 * 180.23218 * 24 23 22 48 48 H 1.07996 * 119.99720 * 179.72797 * 25 24 23 49 49 H 1.07998 * 120.00088 * 179.97438 * 26 25 24 50 50 H 1.08001 * 120.00723 * 179.97438 * 27 26 25 51 51 H 1.09009 * 110.40925 * 280.70184 * 28 20 19 52 52 H 1.09000 * 110.41507 * 158.26236 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0671 -1.3241 2.5438 7 1 3.3688 -1.8046 3.2130 8 6 5.4185 -1.3612 2.8150 9 7 6.2691 -0.7766 1.9999 10 14 6.0413 -2.2418 4.3401 11 1 6.3207 -3.6629 4.0118 12 1 5.0102 -2.1737 5.4068 13 1 7.2879 -1.5890 4.8144 14 7 2.0197 -0.6924 -1.1994 15 6 2.0824 0.2227 -2.3469 16 6 2.5962 -0.5328 -3.5742 17 1 3.5583 -0.9968 -3.3570 18 6 1.5732 -1.6008 -4.0130 19 6 1.1646 -1.1998 -5.4467 20 7 2.3065 -0.3933 -5.9496 21 6 1.8936 0.4625 -7.0700 22 6 1.6068 -0.3934 -8.2767 23 6 2.6163 -0.6797 -9.1767 24 6 2.3545 -1.4687 -10.2811 25 6 1.0806 -1.9628 -10.4912 26 6 0.0699 -1.6722 -9.5940 27 6 0.3328 -0.8871 -8.4871 28 6 2.7197 0.4237 -4.7797 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7715 1.2056 33 1 1.6053 -0.2617 2.1369 34 1 3.8531 0.4371 1.3573 35 1 3.9994 -1.0727 0.4259 36 1 5.9458 -0.3196 1.2077 37 1 1.4496 -1.4979 -1.4101 38 1 1.0869 0.6164 -2.5525 39 1 2.7587 1.0463 -2.1182 40 1 2.0337 -2.5887 -4.0130 41 1 0.7059 -1.5880 -3.3530 42 1 1.0246 -2.0869 -6.0643 43 1 0.2544 -0.6002 -5.4289 44 1 0.9949 1.0140 -6.7938 45 1 2.6933 1.1650 -7.3045 46 1 3.6104 -0.2897 -9.0151 47 1 3.1441 -1.6955 -10.9821 48 1 0.8750 -2.5756 -11.3563 49 1 -0.9254 -2.0578 -9.7583 50 1 -0.4569 -0.6597 -7.7863 51 1 2.0528 1.2773 -4.6576 52 1 3.7504 0.7589 -4.8950 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479683.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:34 Heat of formation + Delta-G solvation = 6.062579 kcal Electronic energy + Delta-G solvation = -25850.448623 eV Core-core repulsion = 22427.343552 eV Total energy + Delta-G solvation = -3423.105070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.01501 -38.89087 -37.12312 -34.28732 -33.18841 -31.61380 -31.18397 -29.97493 -29.31488 -28.39810 -25.87423 -24.66165 -23.71970 -22.84696 -21.98808 -21.49279 -21.02250 -20.00958 -19.66895 -17.04040 -16.54107 -16.46048 -15.99087 -15.64653 -15.45349 -15.07669 -14.42769 -14.19194 -13.97624 -13.71622 -13.62291 -13.52539 -13.12644 -12.93535 -12.77720 -12.59165 -12.52831 -12.34556 -12.20198 -12.08361 -11.74491 -11.56721 -11.27128 -11.20325 -11.02992 -10.96962 -10.70158 -10.66558 -10.55239 -10.21982 -10.02653 -9.74699 -9.52871 -9.19635 -9.10167 -8.67469 -8.36917 -8.16740 -7.93237 -6.20487 -3.87380 1.04474 1.13004 3.40456 3.50669 3.54692 3.70120 3.92651 4.29293 4.38956 4.54110 4.65801 4.66495 4.70838 4.77180 4.84201 4.87746 5.04127 5.07891 5.20846 5.25774 5.27918 5.36442 5.39043 5.42702 5.46508 5.52512 5.56812 5.59755 5.63468 5.71049 5.71838 5.75400 5.82248 5.94639 6.00848 6.12140 6.16284 6.20885 6.22946 6.28127 6.33397 6.38176 6.58841 6.64274 6.70459 6.78337 6.78901 7.19319 7.43130 7.68280 7.75160 7.91108 8.42074 8.65344 9.06889 9.84444 11.20566 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021195 B = 0.002066 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.729245 B =13549.116047 C =14241.910988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.083 3.917 3 H 0.070 0.930 4 C -0.091 4.091 5 C 0.017 3.983 6 C -0.600 4.600 7 H 0.044 0.956 8 C 0.012 3.988 9 N -0.917 5.917 10 Si 1.069 2.931 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.672 5.672 15 C 0.069 3.931 16 C -0.089 4.089 17 H 0.093 0.907 18 C -0.120 4.120 19 C 0.035 3.965 20 N -0.503 5.503 21 C 0.081 3.919 22 C -0.074 4.074 23 C -0.099 4.099 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.114 4.114 28 C 0.038 3.962 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.047 0.953 34 H -0.003 1.003 35 H 0.024 0.976 36 H 0.270 0.730 37 H 0.335 0.665 38 H 0.020 0.980 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.039 0.961 44 H 0.044 0.956 45 H 0.084 0.916 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.117 0.883 51 H 0.044 0.956 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.033 1.765 -24.546 28.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.027 4.027 3 H 0.088 0.912 4 C -0.129 4.129 5 C -0.020 4.020 6 C -0.638 4.638 7 H 0.062 0.938 8 C -0.191 4.191 9 N -0.554 5.554 10 Si 0.898 3.102 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.211 1.211 14 N -0.302 5.302 15 C -0.061 4.061 16 C -0.109 4.109 17 H 0.112 0.888 18 C -0.158 4.158 19 C -0.093 4.093 20 N -0.227 5.227 21 C -0.046 4.046 22 C -0.074 4.074 23 C -0.117 4.117 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.132 4.132 28 C -0.090 4.090 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.015 0.985 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.153 0.847 38 H 0.038 0.962 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.102 0.898 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.135 0.865 51 H 0.062 0.938 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.554 1.147 -23.723 26.412 hybrid contribution -3.145 0.990 -0.817 3.397 sum -14.699 2.137 -24.541 28.686 Atomic orbital electron populations 1.22523 0.98565 1.01541 1.01244 1.21744 0.91013 0.98256 0.91682 0.91186 1.21493 0.99751 0.98522 0.93124 1.19111 0.90033 0.95643 0.97233 1.22172 0.94506 1.37604 1.09565 0.93788 1.25779 0.93575 0.97026 1.02756 1.70723 1.37274 1.33588 1.13845 0.83554 0.75515 0.76057 0.75058 1.21588 1.21699 1.21149 1.60508 1.57710 1.09051 1.02953 1.21992 0.98324 0.95583 0.90168 1.21916 1.00600 0.95352 0.92984 0.88847 1.22363 0.98755 0.99877 0.94776 1.23140 0.92059 0.98079 0.96011 1.65429 1.31422 1.20626 1.05216 1.21207 0.99986 0.93736 0.89709 1.19720 0.93498 0.98568 0.95662 1.21048 0.98793 0.97941 0.93965 1.21169 0.96897 0.98001 0.97863 1.21150 0.93364 1.00152 0.99449 1.21107 0.99228 0.98765 0.94889 1.21050 0.96363 0.98144 0.97692 1.23154 1.01305 0.95013 0.89508 0.92227 0.93788 0.92772 0.93360 0.93449 0.98508 0.95756 0.91975 0.84693 0.96164 0.91009 0.90675 0.91642 0.90264 0.94241 0.93811 0.89780 0.85932 0.86094 0.86262 0.86226 0.86532 0.93800 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 9.16 37.15 0.34 -2.10 16 2 C 0.08 1.39 2.59 -67.72 -0.18 1.22 16 3 H 0.07 1.23 7.80 -51.93 -0.40 0.83 16 4 C -0.09 -1.92 4.83 -26.73 -0.13 -2.05 16 5 C 0.02 0.45 4.17 -27.89 -0.12 0.33 16 6 C -0.60 -17.82 9.11 -34.44 -0.31 -18.13 16 7 H 0.04 1.29 7.74 -52.49 -0.41 0.88 16 8 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 9 N -0.92 -29.18 13.65 55.43 0.76 -28.42 16 10 Si 1.07 26.33 29.90 -169.99 -5.08 21.25 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 N -0.67 -10.66 5.70 -106.72 -0.61 -11.27 16 15 C 0.07 0.92 4.66 -3.82 -0.02 0.90 16 16 C -0.09 -1.08 3.31 -89.23 -0.30 -1.37 16 17 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 18 C -0.12 -1.30 6.15 -25.35 -0.16 -1.45 16 19 C 0.03 0.35 5.48 -2.18 -0.01 0.34 16 20 N -0.50 -5.27 5.36 -231.40 -1.24 -6.51 16 21 C 0.08 0.73 4.97 -4.98 -0.02 0.70 16 22 C -0.07 -0.68 5.10 -104.62 -0.53 -1.21 16 23 C -0.10 -0.88 9.70 -39.58 -0.38 -1.26 16 24 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 25 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 26 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 27 C -0.11 -0.97 8.74 -39.58 -0.35 -1.32 16 28 C 0.04 0.41 6.03 -2.18 -0.01 0.39 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.53 7.45 -51.93 -0.39 0.15 16 31 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.00 -0.09 8.01 -51.93 -0.42 -0.51 16 35 H 0.02 0.68 7.62 -51.93 -0.40 0.29 16 36 H 0.27 8.59 7.22 -40.82 -0.29 8.29 16 37 H 0.33 4.88 7.17 -39.29 -0.28 4.60 16 38 H 0.02 0.25 7.44 -51.93 -0.39 -0.14 16 39 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.68 6.95 -51.93 -0.36 0.32 16 42 H 0.08 0.81 7.82 -51.93 -0.41 0.40 16 43 H 0.04 0.37 7.82 -51.92 -0.41 -0.04 16 44 H 0.04 0.37 7.82 -51.93 -0.41 -0.03 16 45 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 46 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 47 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 48 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 49 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 50 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 51 H 0.04 0.44 7.72 -51.92 -0.40 0.04 16 52 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 407.49 15.07 6.14 6.14 Total: -1.00 -32.45 407.49 -13.16 -45.60 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -9.66 Total: 2.04 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: -3.47 Total: -28.83 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -1.09 Total: -46.20 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -5.08 Total: 21.25 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.45 -13.16 -45.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479683.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.667 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds