Wall clock time and date at job start Tue Mar 31 2020 11:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52997 * 109.47366 * 119.99951 * 2 1 3 5 5 C 1.52999 * 109.47415 * 185.00278 * 4 2 1 6 6 C 1.50695 * 109.47057 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00538 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99661 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00186 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00030 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47297 * 89.99863 * 10 8 6 12 12 H 1.48503 * 109.47261 * 330.00044 * 10 8 6 13 13 H 1.48500 * 109.47454 * 210.00037 * 10 8 6 14 14 N 1.46898 * 109.47362 * 240.00165 * 2 1 3 15 15 C 1.46905 * 111.00044 * 84.99436 * 14 2 1 16 16 C 1.53000 * 109.46941 * 179.97438 * 15 14 2 17 17 H 1.08995 * 110.29225 * 304.33051 * 16 15 14 18 18 C 1.54262 * 110.32167 * 66.45890 * 16 15 14 19 19 C 1.54384 * 105.06019 * 118.89407 * 18 16 15 20 20 N 1.48560 * 104.59448 * 23.84892 * 19 18 16 21 21 C 1.46899 * 111.00102 * 200.95849 * 20 19 18 22 22 C 1.50698 * 109.47373 * 290.13278 * 21 20 19 23 23 C 1.38237 * 119.99679 * 269.72457 * 22 21 20 24 24 C 1.38239 * 119.99879 * 179.76490 * 23 22 21 25 25 C 1.38239 * 119.99806 * 0.50906 * 24 23 22 26 26 C 1.38232 * 120.00009 * 359.74353 * 25 24 23 27 27 C 1.38231 * 120.00309 * 0.02562 * 26 25 24 28 28 C 1.48557 * 104.22545 * 320.52150 * 20 19 18 29 29 H 1.08998 * 109.47589 * 299.99533 * 1 2 3 30 30 H 1.09000 * 109.47210 * 60.00116 * 1 2 3 31 31 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47302 * 65.00142 * 4 2 1 33 33 H 1.08998 * 109.46899 * 305.00279 * 4 2 1 34 34 H 1.09002 * 109.46997 * 59.99676 * 5 4 2 35 35 H 1.09000 * 109.46625 * 300.00101 * 5 4 2 36 36 H 0.97001 * 119.99697 * 359.97438 * 9 8 6 37 37 H 1.00900 * 110.99959 * 321.04782 * 14 2 1 38 38 H 1.09001 * 109.47464 * 300.00509 * 15 14 2 39 39 H 1.09004 * 109.46805 * 60.00251 * 15 14 2 40 40 H 1.08993 * 110.32495 * 237.78561 * 18 16 15 41 41 H 1.08996 * 110.32329 * 359.89836 * 18 16 15 42 42 H 1.08998 * 110.41209 * 142.63000 * 19 18 16 43 43 H 1.09008 * 110.40779 * 265.07408 * 19 18 16 44 44 H 1.09003 * 109.46908 * 50.12969 * 21 20 19 45 45 H 1.08999 * 109.47291 * 170.12800 * 21 20 19 46 46 H 1.07995 * 120.00086 * 359.97438 * 23 22 21 47 47 H 1.07995 * 119.99870 * 180.23218 * 24 23 22 48 48 H 1.07996 * 119.99720 * 179.72797 * 25 24 23 49 49 H 1.07998 * 120.00088 * 179.97438 * 26 25 24 50 50 H 1.08001 * 120.00723 * 179.97438 * 27 26 25 51 51 H 1.09009 * 110.40925 * 280.70184 * 28 20 19 52 52 H 1.09000 * 110.41507 * 158.26236 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0671 -1.3241 2.5438 7 1 3.3688 -1.8046 3.2130 8 6 5.4185 -1.3612 2.8150 9 7 6.2691 -0.7766 1.9999 10 14 6.0413 -2.2418 4.3401 11 1 6.3207 -3.6629 4.0118 12 1 5.0102 -2.1737 5.4068 13 1 7.2879 -1.5890 4.8144 14 7 2.0197 -0.6924 -1.1994 15 6 2.0824 0.2227 -2.3469 16 6 2.5962 -0.5328 -3.5742 17 1 3.5583 -0.9968 -3.3570 18 6 1.5732 -1.6008 -4.0130 19 6 1.1646 -1.1998 -5.4467 20 7 2.3065 -0.3933 -5.9496 21 6 1.8936 0.4625 -7.0700 22 6 1.6068 -0.3934 -8.2767 23 6 2.6163 -0.6797 -9.1767 24 6 2.3545 -1.4687 -10.2811 25 6 1.0806 -1.9628 -10.4912 26 6 0.0699 -1.6722 -9.5940 27 6 0.3328 -0.8871 -8.4871 28 6 2.7197 0.4237 -4.7797 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7715 1.2056 33 1 1.6053 -0.2617 2.1369 34 1 3.8531 0.4371 1.3573 35 1 3.9994 -1.0727 0.4259 36 1 5.9458 -0.3196 1.2077 37 1 1.4496 -1.4979 -1.4101 38 1 1.0869 0.6164 -2.5525 39 1 2.7587 1.0463 -2.1182 40 1 2.0337 -2.5887 -4.0130 41 1 0.7059 -1.5880 -3.3530 42 1 1.0246 -2.0869 -6.0643 43 1 0.2544 -0.6002 -5.4289 44 1 0.9949 1.0140 -6.7938 45 1 2.6933 1.1650 -7.3045 46 1 3.6104 -0.2897 -9.0151 47 1 3.1441 -1.6955 -10.9821 48 1 0.8750 -2.5756 -11.3563 49 1 -0.9254 -2.0578 -9.7583 50 1 -0.4569 -0.6597 -7.7863 51 1 2.0528 1.2773 -4.6576 52 1 3.7504 0.7589 -4.8950 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172479683.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:33 Heat of formation + Delta-G solvation = -12.604657 kcal Electronic energy + Delta-G solvation = -25851.258095 eV Core-core repulsion = 22427.343552 eV Total energy + Delta-G solvation = -3423.914542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.76377 -39.68919 -38.39065 -35.83857 -34.71282 -32.80509 -31.78019 -31.17064 -30.50301 -29.53175 -26.78806 -26.44687 -24.86829 -23.55125 -23.38567 -22.66854 -21.83381 -21.37078 -20.69536 -18.78279 -17.66729 -17.42658 -16.88303 -16.58391 -16.13457 -16.11186 -15.67556 -15.48701 -15.38072 -14.97173 -14.50564 -14.33878 -14.31273 -14.21526 -14.09573 -13.84041 -13.61675 -13.48976 -13.19105 -13.10490 -12.90715 -12.70238 -12.51707 -12.42941 -12.17986 -11.94892 -11.87258 -11.82510 -11.74434 -11.65920 -11.59497 -11.48218 -11.41651 -10.56220 -10.47402 -9.80705 -9.74794 -9.42074 -9.19079 -8.63111 -6.32102 0.43113 0.52415 1.51666 1.62051 1.79286 2.59462 2.73632 3.11345 3.21399 3.27396 3.60947 3.78410 3.88769 3.91822 3.96970 4.01261 4.16889 4.21437 4.25212 4.30001 4.33921 4.35557 4.42819 4.48381 4.59252 4.61537 4.65668 4.66955 4.70235 4.75600 4.77518 4.84679 4.91085 4.93442 4.97861 5.05990 5.12262 5.16279 5.17449 5.22182 5.29693 5.34447 5.52488 5.57061 5.64014 5.69170 5.69747 5.84402 6.00127 6.09669 6.14286 6.20527 6.29015 6.57686 6.66756 7.50169 8.77153 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021195 B = 0.002066 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.729245 B =13549.116047 C =14241.910988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.090 3.910 3 H 0.059 0.941 4 C -0.082 4.082 5 C 0.023 3.977 6 C -0.619 4.619 7 H 0.046 0.954 8 C -0.045 4.045 9 N -0.940 5.940 10 Si 1.120 2.880 11 H -0.273 1.273 12 H -0.269 1.269 13 H -0.283 1.283 14 N -0.693 5.693 15 C 0.077 3.923 16 C -0.086 4.086 17 H 0.063 0.937 18 C -0.115 4.115 19 C 0.042 3.958 20 N -0.516 5.516 21 C 0.084 3.916 22 C -0.087 4.087 23 C -0.115 4.115 24 C -0.130 4.130 25 C -0.129 4.129 26 C -0.129 4.129 27 C -0.123 4.123 28 C 0.044 3.956 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.048 0.952 34 H -0.028 1.028 35 H 0.000 1.000 36 H 0.254 0.746 37 H 0.343 0.657 38 H 0.042 0.958 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.086 0.914 46 H 0.124 0.876 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.126 0.874 51 H 0.055 0.945 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.002 1.222 -24.972 29.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 H 0.077 0.923 4 C -0.120 4.120 5 C -0.014 4.014 6 C -0.657 4.657 7 H 0.064 0.936 8 C -0.241 4.241 9 N -0.578 5.578 10 Si 0.941 3.059 11 H -0.198 1.198 12 H -0.194 1.194 13 H -0.208 1.208 14 N -0.325 5.325 15 C -0.052 4.052 16 C -0.105 4.105 17 H 0.082 0.918 18 C -0.153 4.153 19 C -0.085 4.085 20 N -0.240 5.240 21 C -0.043 4.043 22 C -0.088 4.088 23 C -0.134 4.134 24 C -0.148 4.148 25 C -0.147 4.147 26 C -0.147 4.147 27 C -0.141 4.141 28 C -0.084 4.084 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.067 0.933 34 H -0.010 1.010 35 H 0.019 0.981 36 H 0.064 0.936 37 H 0.162 0.838 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.142 0.858 47 H 0.154 0.846 48 H 0.157 0.843 49 H 0.156 0.844 50 H 0.144 0.856 51 H 0.074 0.926 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.552 0.608 -24.173 27.720 hybrid contribution -2.514 1.155 -0.744 2.864 sum -16.066 1.763 -24.917 29.700 Atomic orbital electron populations 1.22373 0.95216 1.02528 1.02539 1.21506 0.93520 0.96796 0.90153 0.92291 1.21351 0.95738 0.99148 0.95775 1.18986 0.93913 0.93325 0.95176 1.22642 0.94990 1.37570 1.10508 0.93572 1.27460 0.94386 0.97019 1.05252 1.70871 1.37717 1.35074 1.14150 0.82913 0.75609 0.75579 0.71779 1.19835 1.19389 1.20809 1.60382 1.58501 1.10036 1.03619 1.21924 0.99031 0.94747 0.89521 1.21797 0.99498 0.95984 0.93251 0.91829 1.22317 0.98507 0.98809 0.95711 1.23074 0.92307 0.98122 0.95035 1.65406 1.32078 1.21113 1.05428 1.21206 1.00378 0.93598 0.89139 1.19813 0.93987 0.99141 0.95846 1.21219 0.99022 0.98585 0.94571 1.21431 0.97733 0.97749 0.97914 1.21466 0.93151 1.00058 1.00060 1.21407 1.00240 0.98423 0.94599 1.21227 0.96355 0.98284 0.98245 1.23060 1.01446 0.94936 0.88959 0.91725 0.91699 0.91925 0.93494 0.93335 1.00966 0.98124 0.93634 0.83782 0.94040 0.92623 0.91673 0.90684 0.90471 0.92984 0.93048 0.89515 0.85808 0.84599 0.84292 0.84381 0.85639 0.92637 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 9.16 71.98 0.66 -3.46 16 2 C 0.09 2.98 2.59 44.91 0.12 3.09 16 3 H 0.06 2.07 7.80 -2.39 -0.02 2.05 16 4 C -0.08 -3.48 4.83 30.59 0.15 -3.33 16 5 C 0.02 1.27 4.17 29.85 0.12 1.39 16 6 C -0.62 -37.29 9.11 25.60 0.23 -37.06 16 7 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 8 C -0.04 -2.71 5.46 84.65 0.46 -2.25 16 9 N -0.94 -61.25 13.65 21.45 0.29 -60.96 16 10 Si 1.12 52.57 29.90 68.60 2.05 54.62 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 14 N -0.69 -21.90 5.70 -491.57 -2.80 -24.71 16 15 C 0.08 2.02 4.66 86.30 0.40 2.42 16 16 C -0.09 -2.08 3.31 -9.90 -0.03 -2.12 16 17 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 18 C -0.12 -2.41 6.15 31.49 0.19 -2.22 16 19 C 0.04 0.79 5.48 86.45 0.47 1.26 16 20 N -0.52 -10.42 5.36 -886.02 -4.75 -15.17 16 21 C 0.08 1.42 4.97 85.56 0.42 1.85 16 22 C -0.09 -1.52 5.10 -19.86 -0.10 -1.62 16 23 C -0.12 -2.00 9.70 22.27 0.22 -1.78 16 24 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 25 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16 26 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 27 C -0.12 -1.92 8.74 22.27 0.19 -1.72 16 28 C 0.04 0.92 6.03 86.45 0.52 1.44 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.35 7.45 -2.39 -0.02 1.33 16 31 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H -0.03 -1.66 8.01 -2.39 -0.02 -1.67 16 35 H 0.00 0.02 7.62 -2.39 -0.02 0.01 16 36 H 0.25 16.90 7.22 -92.71 -0.67 16.23 16 37 H 0.34 9.69 7.17 -89.69 -0.64 9.04 16 38 H 0.04 0.92 7.44 -2.39 -0.02 0.91 16 39 H 0.06 1.62 8.06 -2.38 -0.02 1.61 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.42 6.95 -2.39 -0.02 1.41 16 42 H 0.08 1.48 7.82 -2.39 -0.02 1.46 16 43 H 0.05 0.84 7.82 -2.38 -0.02 0.83 16 44 H 0.05 0.78 7.82 -2.39 -0.02 0.77 16 45 H 0.09 1.38 8.07 -2.39 -0.02 1.36 16 46 H 0.12 1.98 8.06 -2.91 -0.02 1.96 16 47 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 48 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 49 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 50 H 0.13 1.65 8.06 -2.91 -0.02 1.62 16 51 H 0.06 1.03 7.72 -2.38 -0.02 1.01 16 52 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -70.96 407.49 -0.19 -71.15 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.31 Total: 24.04 kcal Atomic # 6 Polarization: -53.69 SS G_CDS: 4.71 Total: -48.98 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -7.26 Total: -100.83 kcal Atomic # 14 Polarization: 52.57 SS G_CDS: 2.05 Total: 54.62 kcal Total: -70.96 -0.19 -71.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479683.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.545 kcal (2) G-P(sol) polarization free energy of solvation -70.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds