Wall clock time and date at job start Tue Mar 31 2020 11:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46855 * 2 1 4 4 C 1.53004 * 109.47190 * 119.99526 * 2 1 3 5 5 C 1.52995 * 109.46662 * 185.00493 * 4 2 1 6 6 C 1.50712 * 109.46842 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99668 * 359.97438 * 6 5 4 8 8 C 1.37867 * 119.99900 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00565 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99854 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47332 * 89.99809 * 10 8 6 12 12 H 1.48505 * 109.47345 * 210.00204 * 10 8 6 13 13 H 1.48504 * 109.47257 * 329.99952 * 10 8 6 14 14 N 1.46895 * 109.47467 * 240.00238 * 2 1 3 15 15 C 1.46900 * 111.00575 * 84.99269 * 14 2 1 16 16 H 1.08997 * 109.53193 * 325.10573 * 15 14 2 17 17 C 1.53123 * 109.48930 * 85.20261 * 15 14 2 18 18 C 1.53127 * 109.15019 * 177.60800 * 17 15 14 19 19 C 1.53042 * 109.27596 * 302.34079 * 18 17 15 20 20 N 1.46843 * 109.52278 * 59.17923 * 19 18 17 21 21 C 1.46895 * 110.99970 * 174.15687 * 20 19 18 22 22 C 1.50701 * 109.47042 * 314.21155 * 21 20 19 23 23 C 1.38235 * 119.99858 * 269.72331 * 22 21 20 24 24 C 1.38242 * 119.99813 * 179.81441 * 23 22 21 25 25 C 1.38232 * 119.99962 * 0.39522 * 24 23 22 26 26 C 1.38245 * 119.99976 * 359.85619 * 25 24 23 27 27 C 1.38229 * 119.99807 * 359.96156 * 26 25 24 28 28 C 1.46847 * 111.20124 * 298.25596 * 20 19 18 29 29 H 1.09002 * 109.46855 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47318 * 300.00059 * 1 2 3 31 31 H 1.09005 * 109.47446 * 60.00784 * 1 2 3 32 32 H 1.08998 * 109.47170 * 305.00240 * 4 2 1 33 33 H 1.08993 * 109.46519 * 65.00519 * 4 2 1 34 34 H 1.08999 * 109.47604 * 299.99983 * 5 4 2 35 35 H 1.08993 * 109.47633 * 60.00708 * 5 4 2 36 36 H 0.96999 * 120.00443 * 180.02562 * 9 8 6 37 37 H 1.00908 * 110.99888 * 321.04034 * 14 2 1 38 38 H 1.09003 * 109.53012 * 57.70373 * 17 15 14 39 39 H 1.08997 * 109.57453 * 297.53650 * 17 15 14 40 40 H 1.08997 * 109.49981 * 182.39822 * 18 17 15 41 41 H 1.08999 * 109.50124 * 62.28085 * 18 17 15 42 42 H 1.08993 * 109.46299 * 299.16259 * 19 18 17 43 43 H 1.09004 * 109.45702 * 179.19362 * 19 18 17 44 44 H 1.08997 * 109.47358 * 74.21117 * 21 20 19 45 45 H 1.09001 * 109.47788 * 194.20927 * 21 20 19 46 46 H 1.08002 * 120.00333 * 359.97438 * 23 22 21 47 47 H 1.07999 * 119.99543 * 180.23427 * 24 23 22 48 48 H 1.07998 * 119.99843 * 179.83734 * 25 24 23 49 49 H 1.07995 * 119.99771 * 179.97438 * 26 25 24 50 50 H 1.08004 * 119.99701 * 179.97438 * 27 26 25 51 51 H 1.09002 * 109.46481 * 181.76055 * 28 20 19 52 52 H 1.08994 * 109.46283 * 301.73908 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6130 1.3137 6 6 4.0673 -1.3239 2.5440 7 1 3.3688 -1.8043 3.2131 8 6 5.4185 -1.3609 2.8151 9 7 6.2690 -0.7755 2.0006 10 14 6.0412 -2.2414 4.3404 11 1 6.3207 -3.6625 4.0122 12 1 7.2879 -1.5885 4.8147 13 1 5.0102 -2.1732 5.4070 14 7 2.0197 -0.6924 -1.1994 15 6 2.0824 0.2226 -2.3469 16 1 1.2590 0.9345 -2.2908 17 6 3.4141 0.9782 -2.3257 18 6 3.4968 1.8850 -3.5567 19 6 3.3503 1.0351 -4.8210 20 7 2.0609 0.3331 -4.7938 21 6 1.8249 -0.3834 -6.0542 22 6 2.1575 0.5186 -7.2147 23 6 1.1796 1.3257 -7.7652 24 6 1.4857 2.1560 -8.8273 25 6 2.7677 2.1731 -9.3440 26 6 3.7444 1.3621 -8.7968 27 6 3.4392 0.5347 -7.7324 28 6 1.9771 -0.5792 -3.6461 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 1.6054 -0.2616 2.1370 33 1 1.7517 -1.7714 1.2056 34 1 3.9995 -1.0725 0.4260 35 1 3.8531 0.4372 1.3574 36 1 7.2198 -0.8018 2.1912 37 1 1.4496 -1.4980 -1.4100 38 1 4.2381 0.2649 -2.3426 39 1 3.4755 1.5844 -1.4219 40 1 4.4606 2.3938 -3.5698 41 1 2.6955 2.6231 -3.5195 42 1 4.1597 0.3065 -4.8646 43 1 3.3944 1.6797 -5.6990 44 1 2.4563 -1.2711 -6.0913 45 1 0.7776 -0.6800 -6.1131 46 1 0.1770 1.3096 -7.3639 47 1 0.7225 2.7893 -9.2549 48 1 3.0061 2.8198 -10.1754 49 1 4.7458 1.3752 -9.2008 50 1 4.2022 -0.0992 -7.3051 51 1 1.0239 -1.1073 -3.6708 52 1 2.7931 -1.3002 -3.6951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480209.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:58 Heat of formation + Delta-G solvation = 10.471858 kcal Electronic energy + Delta-G solvation = -26576.068918 eV Core-core repulsion = 23153.155048 eV Total energy + Delta-G solvation = -3422.913870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.07142 -38.75585 -36.73847 -34.03006 -32.93788 -31.54278 -31.12955 -31.07941 -29.26894 -27.36014 -26.48166 -24.99319 -23.14781 -22.94123 -22.39362 -21.35002 -20.74489 -19.67771 -19.41229 -16.99747 -16.22925 -16.08647 -15.66280 -15.54357 -15.18553 -14.79824 -14.43580 -14.30160 -14.07169 -13.90119 -13.61755 -13.46319 -12.98460 -12.93984 -12.69073 -12.56688 -12.34845 -12.28893 -12.10078 -11.82940 -11.38994 -11.24954 -11.23424 -11.19079 -11.07903 -10.84442 -10.57938 -10.50075 -10.38459 -10.12911 -10.06311 -9.56812 -9.16778 -9.13336 -9.02434 -8.85732 -8.34185 -8.20218 -7.81689 -5.85718 -3.86528 1.07584 1.17141 3.38595 3.43575 3.44523 3.47896 3.92128 4.46035 4.56279 4.59584 4.65511 4.76299 4.87344 4.88999 5.06460 5.10866 5.21090 5.26121 5.28317 5.42823 5.44378 5.49452 5.50061 5.50978 5.60157 5.62223 5.71331 5.75920 5.79771 5.82684 5.90006 6.02802 6.05782 6.17899 6.19207 6.23329 6.27339 6.32917 6.38813 6.45755 6.51208 6.72171 6.74153 6.76025 6.93108 6.98971 7.01120 7.36738 7.60903 7.87465 7.89652 8.12248 8.27563 8.61301 9.22669 9.75831 11.25245 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020737 B = 0.002458 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.927415 B =11389.643067 C =12229.833662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.086 3.914 3 H 0.072 0.928 4 C -0.098 4.098 5 C 0.031 3.969 6 C -0.517 4.517 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.668 5.668 15 C 0.096 3.904 16 H 0.046 0.954 17 C -0.109 4.109 18 C -0.116 4.116 19 C 0.052 3.948 20 N -0.530 5.530 21 C 0.093 3.907 22 C -0.079 4.079 23 C -0.100 4.100 24 C -0.122 4.122 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.113 4.113 28 C 0.056 3.944 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.032 0.968 35 H 0.006 0.994 36 H 0.257 0.743 37 H 0.333 0.667 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.033 0.967 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.082 0.918 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.119 0.881 51 H 0.069 0.931 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.393 5.064 -22.820 25.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.023 4.023 3 H 0.090 0.910 4 C -0.136 4.136 5 C -0.006 4.006 6 C -0.556 4.556 7 H 0.068 0.932 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.201 1.201 14 N -0.298 5.298 15 C -0.014 4.014 16 H 0.064 0.936 17 C -0.147 4.147 18 C -0.154 4.154 19 C -0.076 4.076 20 N -0.254 5.254 21 C -0.035 4.035 22 C -0.079 4.079 23 C -0.118 4.118 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.131 4.131 28 C -0.072 4.072 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.151 0.849 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.101 0.899 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.137 0.863 51 H 0.088 0.912 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.910 5.515 -22.601 25.286 hybrid contribution 0.147 -0.989 0.569 1.150 sum -9.762 4.526 -22.032 24.519 Atomic orbital electron populations 1.22539 0.98706 1.01426 1.01248 1.21740 0.90782 0.98354 0.91450 0.91027 1.21627 1.00626 0.98317 0.93075 1.18976 0.88285 0.96388 0.96923 1.21367 0.91816 1.33880 1.08509 0.93171 1.24991 0.97162 0.95818 0.96480 1.69978 1.02088 1.44393 1.37001 0.86700 0.78263 0.79830 0.83784 1.20831 1.21386 1.20065 1.60558 1.57566 1.08852 1.02853 1.21413 0.97428 0.93930 0.88638 0.93590 1.21591 0.97530 0.98359 0.97257 1.21591 1.01636 0.98096 0.94073 1.22244 0.89111 0.97112 0.99095 1.62034 1.33126 1.28976 1.01311 1.21078 1.01641 0.93751 0.86986 1.19776 0.93725 0.97939 0.96506 1.21041 0.99326 0.95645 0.95832 1.21158 0.96741 0.99180 0.96957 1.21154 0.93489 0.99296 1.00128 1.21125 0.99390 0.96767 0.96680 1.21124 0.96059 0.99353 0.96595 1.22228 1.01002 0.93934 0.90046 0.92885 0.92369 0.93663 0.93636 0.93565 0.94935 0.97562 0.93313 0.84883 0.91117 0.91477 0.91474 0.91672 0.94896 0.90415 0.93880 0.89941 0.85921 0.86157 0.86271 0.86122 0.86256 0.91249 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 9.15 37.16 0.34 -2.15 16 2 C 0.09 1.47 2.40 -67.71 -0.16 1.30 16 3 H 0.07 1.29 7.16 -51.93 -0.37 0.92 16 4 C -0.10 -2.06 4.83 -26.73 -0.13 -2.19 16 5 C 0.03 0.83 4.86 -27.88 -0.14 0.69 16 6 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 7 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 10 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 14 N -0.67 -10.75 5.51 -99.66 -0.55 -11.30 16 15 C 0.10 1.37 2.46 -67.63 -0.17 1.20 16 16 H 0.05 0.67 7.12 -51.93 -0.37 0.30 16 17 C -0.11 -1.68 5.48 -26.60 -0.15 -1.83 16 18 C -0.12 -1.48 6.09 -26.64 -0.16 -1.64 16 19 C 0.05 0.61 4.58 -3.83 -0.02 0.60 16 20 N -0.53 -6.08 4.80 -236.12 -1.13 -7.21 16 21 C 0.09 0.91 5.43 -4.98 -0.03 0.88 16 22 C -0.08 -0.76 4.12 -104.62 -0.43 -1.19 16 23 C -0.10 -0.90 9.70 -39.58 -0.38 -1.28 16 24 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 25 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 26 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 27 C -0.11 -1.04 7.79 -39.59 -0.31 -1.35 16 28 C 0.06 0.69 4.69 -3.84 -0.02 0.67 16 29 H 0.05 0.70 8.13 -51.93 -0.42 0.27 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.57 7.43 -51.93 -0.39 0.19 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 35 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.33 4.85 8.10 -39.29 -0.32 4.53 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.15 7.48 -51.93 -0.39 0.76 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.89 5.64 -51.93 -0.29 0.60 16 44 H 0.04 0.42 8.02 -51.93 -0.42 0.00 16 45 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 46 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 48 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 49 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 50 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 51 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 52 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 403.40 15.07 6.08 6.08 Total: -1.00 -31.10 403.40 -12.91 -44.01 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -9.67 Total: 2.34 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -3.35 Total: -24.30 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.95 Total: -45.35 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.10 -12.91 -44.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480209.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.485 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds