Wall clock time and date at job start Tue Mar 31 2020 11:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46855 * 2 1 4 4 C 1.53004 * 109.47190 * 119.99526 * 2 1 3 5 5 C 1.52995 * 109.46662 * 185.00493 * 4 2 1 6 6 C 1.50712 * 109.46842 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99668 * 359.97438 * 6 5 4 8 8 C 1.37867 * 119.99900 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00565 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99854 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47332 * 89.99809 * 10 8 6 12 12 H 1.48505 * 109.47345 * 210.00204 * 10 8 6 13 13 H 1.48504 * 109.47257 * 329.99952 * 10 8 6 14 14 N 1.46895 * 109.47467 * 240.00238 * 2 1 3 15 15 C 1.46900 * 111.00575 * 84.99269 * 14 2 1 16 16 H 1.08997 * 109.53193 * 325.10573 * 15 14 2 17 17 C 1.53123 * 109.48930 * 85.20261 * 15 14 2 18 18 C 1.53127 * 109.15019 * 177.60800 * 17 15 14 19 19 C 1.53042 * 109.27596 * 302.34079 * 18 17 15 20 20 N 1.46843 * 109.52278 * 59.17923 * 19 18 17 21 21 C 1.46895 * 110.99970 * 174.15687 * 20 19 18 22 22 C 1.50701 * 109.47042 * 314.21155 * 21 20 19 23 23 C 1.38235 * 119.99858 * 269.72331 * 22 21 20 24 24 C 1.38242 * 119.99813 * 179.81441 * 23 22 21 25 25 C 1.38232 * 119.99962 * 0.39522 * 24 23 22 26 26 C 1.38245 * 119.99976 * 359.85619 * 25 24 23 27 27 C 1.38229 * 119.99807 * 359.96156 * 26 25 24 28 28 C 1.46847 * 111.20124 * 298.25596 * 20 19 18 29 29 H 1.09002 * 109.46855 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47318 * 300.00059 * 1 2 3 31 31 H 1.09005 * 109.47446 * 60.00784 * 1 2 3 32 32 H 1.08998 * 109.47170 * 305.00240 * 4 2 1 33 33 H 1.08993 * 109.46519 * 65.00519 * 4 2 1 34 34 H 1.08999 * 109.47604 * 299.99983 * 5 4 2 35 35 H 1.08993 * 109.47633 * 60.00708 * 5 4 2 36 36 H 0.96999 * 120.00443 * 180.02562 * 9 8 6 37 37 H 1.00908 * 110.99888 * 321.04034 * 14 2 1 38 38 H 1.09003 * 109.53012 * 57.70373 * 17 15 14 39 39 H 1.08997 * 109.57453 * 297.53650 * 17 15 14 40 40 H 1.08997 * 109.49981 * 182.39822 * 18 17 15 41 41 H 1.08999 * 109.50124 * 62.28085 * 18 17 15 42 42 H 1.08993 * 109.46299 * 299.16259 * 19 18 17 43 43 H 1.09004 * 109.45702 * 179.19362 * 19 18 17 44 44 H 1.08997 * 109.47358 * 74.21117 * 21 20 19 45 45 H 1.09001 * 109.47788 * 194.20927 * 21 20 19 46 46 H 1.08002 * 120.00333 * 359.97438 * 23 22 21 47 47 H 1.07999 * 119.99543 * 180.23427 * 24 23 22 48 48 H 1.07998 * 119.99843 * 179.83734 * 25 24 23 49 49 H 1.07995 * 119.99771 * 179.97438 * 26 25 24 50 50 H 1.08004 * 119.99701 * 179.97438 * 27 26 25 51 51 H 1.09002 * 109.46481 * 181.76055 * 28 20 19 52 52 H 1.08994 * 109.46283 * 301.73908 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6130 1.3137 6 6 4.0673 -1.3239 2.5440 7 1 3.3688 -1.8043 3.2131 8 6 5.4185 -1.3609 2.8151 9 7 6.2690 -0.7755 2.0006 10 14 6.0412 -2.2414 4.3404 11 1 6.3207 -3.6625 4.0122 12 1 7.2879 -1.5885 4.8147 13 1 5.0102 -2.1732 5.4070 14 7 2.0197 -0.6924 -1.1994 15 6 2.0824 0.2226 -2.3469 16 1 1.2590 0.9345 -2.2908 17 6 3.4141 0.9782 -2.3257 18 6 3.4968 1.8850 -3.5567 19 6 3.3503 1.0351 -4.8210 20 7 2.0609 0.3331 -4.7938 21 6 1.8249 -0.3834 -6.0542 22 6 2.1575 0.5186 -7.2147 23 6 1.1796 1.3257 -7.7652 24 6 1.4857 2.1560 -8.8273 25 6 2.7677 2.1731 -9.3440 26 6 3.7444 1.3621 -8.7968 27 6 3.4392 0.5347 -7.7324 28 6 1.9771 -0.5792 -3.6461 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 1.6054 -0.2616 2.1370 33 1 1.7517 -1.7714 1.2056 34 1 3.9995 -1.0725 0.4260 35 1 3.8531 0.4372 1.3574 36 1 7.2198 -0.8018 2.1912 37 1 1.4496 -1.4980 -1.4100 38 1 4.2381 0.2649 -2.3426 39 1 3.4755 1.5844 -1.4219 40 1 4.4606 2.3938 -3.5698 41 1 2.6955 2.6231 -3.5195 42 1 4.1597 0.3065 -4.8646 43 1 3.3944 1.6797 -5.6990 44 1 2.4563 -1.2711 -6.0913 45 1 0.7776 -0.6800 -6.1131 46 1 0.1770 1.3096 -7.3639 47 1 0.7225 2.7893 -9.2549 48 1 3.0061 2.8198 -10.1754 49 1 4.7458 1.3752 -9.2008 50 1 4.2022 -0.0992 -7.3051 51 1 1.0239 -1.1073 -3.6708 52 1 2.7931 -1.3002 -3.6951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172480209.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:57 Heat of formation + Delta-G solvation = -7.049844 kcal Electronic energy + Delta-G solvation = -26576.828716 eV Core-core repulsion = 23153.155048 eV Total energy + Delta-G solvation = -3423.673668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.90902 -39.70147 -37.98595 -35.49748 -34.62128 -32.96852 -31.97778 -31.76710 -30.93425 -28.52795 -27.34715 -26.95422 -24.16061 -23.80568 -23.34708 -22.95033 -21.66580 -21.17801 -20.59362 -18.35297 -17.68466 -17.21627 -16.59089 -16.51579 -16.37982 -16.18743 -15.76353 -15.49258 -15.14695 -15.02795 -14.60804 -14.46578 -14.23716 -14.13730 -13.95602 -13.79766 -13.53897 -13.35652 -13.24739 -13.13806 -12.94535 -12.84764 -12.60243 -12.35418 -12.27229 -11.95337 -11.89792 -11.82442 -11.70443 -11.55473 -11.46967 -11.21662 -11.20018 -10.91720 -10.47921 -9.77137 -9.72147 -9.25570 -9.11608 -8.13101 -6.23568 0.42555 0.53694 1.39090 1.40936 1.51630 2.43572 2.65945 3.05928 3.18881 3.45332 3.72181 3.81923 3.96846 4.00497 4.06765 4.10409 4.18916 4.26478 4.33183 4.36169 4.38583 4.44775 4.47593 4.56132 4.62094 4.66996 4.71780 4.75328 4.79500 4.84335 4.91952 4.96130 5.02522 5.08246 5.09986 5.12291 5.13390 5.19778 5.25386 5.31500 5.42154 5.51261 5.58833 5.60349 5.65882 5.72310 5.89798 6.00674 6.05090 6.06035 6.15248 6.33826 6.35928 6.69304 6.96611 7.44397 8.98025 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020737 B = 0.002458 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.927415 B =11389.643067 C =12229.833662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 H 0.055 0.945 4 C -0.089 4.089 5 C 0.043 3.957 6 C -0.542 4.542 7 H 0.055 0.945 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.961 3.039 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.264 1.264 14 N -0.687 5.687 15 C 0.104 3.896 16 H 0.052 0.948 17 C -0.106 4.106 18 C -0.109 4.109 19 C 0.060 3.940 20 N -0.529 5.529 21 C 0.095 3.905 22 C -0.092 4.092 23 C -0.109 4.109 24 C -0.127 4.127 25 C -0.126 4.126 26 C -0.130 4.130 27 C -0.126 4.126 28 C 0.065 3.935 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.003 0.997 35 H -0.027 1.027 36 H 0.260 0.740 37 H 0.344 0.656 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.024 0.976 43 H 0.086 0.914 44 H 0.041 0.959 45 H 0.095 0.905 46 H 0.131 0.869 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.135 0.865 50 H 0.117 0.883 51 H 0.089 0.911 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.060 4.867 -23.595 26.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.015 4.015 3 H 0.073 0.927 4 C -0.127 4.127 5 C 0.006 3.994 6 C -0.580 4.580 7 H 0.073 0.927 8 C -0.200 4.200 9 N -0.573 5.573 10 Si 0.785 3.215 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.188 1.188 14 N -0.319 5.319 15 C -0.006 4.006 16 H 0.070 0.930 17 C -0.145 4.145 18 C -0.147 4.147 19 C -0.068 4.068 20 N -0.254 5.254 21 C -0.032 4.032 22 C -0.092 4.092 23 C -0.128 4.128 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.148 4.148 27 C -0.144 4.144 28 C -0.064 4.064 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.022 0.978 35 H -0.009 1.009 36 H 0.069 0.931 37 H 0.163 0.837 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.042 0.958 43 H 0.104 0.896 44 H 0.059 0.941 45 H 0.113 0.887 46 H 0.149 0.851 47 H 0.158 0.842 48 H 0.158 0.842 49 H 0.153 0.847 50 H 0.135 0.865 51 H 0.108 0.892 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -11.599 5.310 -23.385 26.638 hybrid contribution 0.718 -0.894 0.762 1.377 sum -10.881 4.416 -22.623 25.489 Atomic orbital electron populations 1.22378 0.95349 1.02554 1.02341 1.21485 0.93252 0.96691 0.90104 0.92715 1.21462 0.96561 0.99129 0.95512 1.18778 0.92156 0.93571 0.94934 1.21829 0.92481 1.34240 1.09453 0.92656 1.25959 0.97445 0.96552 1.00008 1.70129 1.02488 1.45627 1.39080 0.85521 0.77789 0.78608 0.79538 1.19865 1.20845 1.18801 1.60411 1.58380 1.09774 1.03338 1.21326 0.96407 0.93800 0.89021 0.93048 1.21534 0.97531 0.97944 0.97492 1.21535 1.02105 0.97784 0.93264 1.22144 0.89239 0.96879 0.98534 1.62044 1.32528 1.28981 1.01852 1.21106 1.02331 0.93588 0.86161 1.19803 0.94138 0.98528 0.96758 1.21224 0.99602 0.95720 0.96208 1.21452 0.97404 0.99063 0.96607 1.21470 0.93320 0.99172 1.00481 1.21375 1.00379 0.96563 0.96444 1.21226 0.96092 0.99880 0.97226 1.22110 1.01477 0.93428 0.89354 0.91706 0.91840 0.91998 0.93358 0.93269 0.97845 1.00862 0.93112 0.83678 0.94155 0.94167 0.91163 0.91045 0.95820 0.89580 0.94093 0.88668 0.85112 0.84209 0.84222 0.84717 0.86475 0.89236 0.95198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 9.15 71.98 0.66 -3.62 16 2 C 0.09 3.22 2.40 44.92 0.11 3.33 16 3 H 0.05 2.04 7.16 -2.39 -0.02 2.02 16 4 C -0.09 -3.76 4.83 30.59 0.15 -3.61 16 5 C 0.04 2.36 4.86 29.85 0.15 2.51 16 6 C -0.54 -32.24 9.11 25.60 0.23 -32.00 16 7 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 8 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 9 N -0.93 -59.15 13.29 21.44 0.28 -58.86 16 10 Si 0.96 45.95 29.54 68.60 2.03 47.97 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 14 N -0.69 -22.39 5.51 -469.21 -2.59 -24.97 16 15 C 0.10 2.99 2.46 44.97 0.11 3.10 16 16 H 0.05 1.44 7.12 -2.39 -0.02 1.43 16 17 C -0.11 -3.49 5.48 30.68 0.17 -3.32 16 18 C -0.11 -2.84 6.09 30.65 0.19 -2.65 16 19 C 0.06 1.41 4.58 86.33 0.40 1.80 16 20 N -0.53 -11.65 4.80 -900.96 -4.32 -15.97 16 21 C 0.09 1.75 5.43 85.56 0.46 2.21 16 22 C -0.09 -1.66 4.12 -19.87 -0.08 -1.74 16 23 C -0.11 -1.77 9.70 22.27 0.22 -1.56 16 24 C -0.13 -1.81 10.05 22.27 0.22 -1.58 16 25 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 26 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 27 C -0.13 -2.22 7.79 22.27 0.17 -2.05 16 28 C 0.06 1.55 4.69 86.32 0.41 1.95 16 29 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.40 7.43 -2.38 -0.02 1.38 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.00 0.19 7.75 -2.39 -0.02 0.17 16 35 H -0.03 -1.65 8.14 -2.39 -0.02 -1.67 16 36 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.34 9.75 8.10 -89.69 -0.73 9.02 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.04 1.49 7.48 -2.39 -0.02 1.48 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.09 1.92 5.64 -2.38 -0.01 1.91 16 44 H 0.04 0.77 8.02 -2.39 -0.02 0.75 16 45 H 0.10 1.51 8.08 -2.39 -0.02 1.49 16 46 H 0.13 1.84 8.06 -2.91 -0.02 1.81 16 47 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 48 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 49 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 50 H 0.12 2.03 8.06 -2.91 -0.02 2.01 16 51 H 0.09 1.81 8.11 -2.39 -0.02 1.79 16 52 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -68.70 403.40 0.00 -68.70 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.13 Total: 23.35 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 4.46 Total: -40.22 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -6.62 Total: -99.81 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -68.70 0.00 -68.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480209.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.653 kcal (2) G-P(sol) polarization free energy of solvation -68.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds