Wall clock time and date at job start Tue Mar 31 2020 11:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47191 * 2 1 4 4 C 1.53007 * 109.46638 * 120.00038 * 2 1 3 5 5 C 1.53000 * 109.46772 * 184.99973 * 4 2 1 6 6 C 1.50699 * 109.46847 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00317 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99792 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99604 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00168 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46838 * 90.00387 * 10 8 6 12 12 H 1.48495 * 109.47276 * 210.00255 * 10 8 6 13 13 H 1.48497 * 109.47311 * 330.00597 * 10 8 6 14 14 N 1.46902 * 109.47197 * 239.99431 * 2 1 3 15 15 C 1.46906 * 110.99573 * 85.00442 * 14 2 1 16 16 C 1.50699 * 109.46990 * 180.02562 * 15 14 2 17 17 C 1.38287 * 119.92364 * 269.72897 * 16 15 14 18 18 C 1.38103 * 120.07049 * 179.72823 * 17 16 15 19 19 C 1.38907 * 119.92661 * 0.54128 * 18 17 16 20 20 N 1.39676 * 120.07328 * 179.70864 * 19 18 17 21 21 C 1.46854 * 111.00051 * 124.23515 * 20 19 18 22 22 C 1.53037 * 109.52283 * 174.16214 * 21 20 19 23 23 C 1.53115 * 109.28358 * 59.17323 * 22 21 20 24 24 C 1.53120 * 109.15982 * 302.35077 * 23 22 21 25 25 C 1.46845 * 111.00400 * 0.02562 * 20 19 18 26 26 C 1.38908 * 119.85094 * 359.72850 * 19 18 17 27 27 C 1.38102 * 119.92433 * 0.02562 * 26 19 18 28 28 H 1.09011 * 109.46887 * 60.00236 * 1 2 3 29 29 H 1.08999 * 109.47708 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47499 * 300.00664 * 1 2 3 31 31 H 1.09003 * 109.47093 * 304.99781 * 4 2 1 32 32 H 1.08994 * 109.46960 * 64.99841 * 4 2 1 33 33 H 1.09003 * 109.47155 * 299.99770 * 5 4 2 34 34 H 1.09000 * 109.47401 * 59.99743 * 5 4 2 35 35 H 0.97007 * 119.99756 * 179.97438 * 9 8 6 36 36 H 1.00896 * 111.00219 * 208.96081 * 14 2 1 37 37 H 1.09002 * 109.46991 * 299.99841 * 15 14 2 38 38 H 1.09000 * 109.47202 * 60.00133 * 15 14 2 39 39 H 1.08002 * 119.96153 * 359.97438 * 17 16 15 40 40 H 1.08000 * 120.03699 * 180.27158 * 18 17 16 41 41 H 1.08998 * 109.45528 * 294.17354 * 21 20 19 42 42 H 1.08999 * 109.46150 * 54.14095 * 21 20 19 43 43 H 1.09006 * 109.49993 * 299.23028 * 22 21 20 44 44 H 1.09000 * 109.50099 * 179.12066 * 22 21 20 45 45 H 1.08995 * 109.52659 * 182.44055 * 23 22 21 46 46 H 1.09003 * 109.51859 * 62.24782 * 23 22 21 47 47 H 1.08998 * 109.50030 * 297.70557 * 24 23 22 48 48 H 1.09007 * 109.50182 * 177.59351 * 24 23 22 49 49 H 1.09004 * 109.45937 * 305.86036 * 25 20 19 50 50 H 1.08998 * 109.45956 * 65.82040 * 25 20 19 51 51 H 1.08003 * 120.03900 * 179.97438 * 26 19 18 52 52 H 1.08001 * 119.96191 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.6134 1.3138 6 6 4.0670 -1.3243 2.5439 7 1 3.3685 -1.8047 3.2131 8 6 5.4183 -1.3606 2.8157 9 7 5.8565 -1.9806 3.8896 10 14 6.6264 -0.5291 1.6588 11 1 6.8310 0.8786 2.0851 12 1 7.9236 -1.2509 1.6954 13 1 6.0849 -0.5539 0.2763 14 7 2.0197 -0.6926 -1.1994 15 6 2.0825 0.2225 -2.3469 16 6 2.5874 -0.5220 -3.5560 17 6 3.9440 -0.5690 -3.8204 18 6 4.4104 -1.2551 -4.9244 19 6 3.5144 -1.8888 -5.7760 20 7 3.9824 -2.5785 -6.8968 21 6 3.5173 -3.9714 -6.8898 22 6 3.9247 -4.6532 -8.1979 23 6 5.4485 -4.6049 -8.3401 24 6 5.9114 -3.1460 -8.2958 25 6 5.4465 -2.5080 -6.9848 26 6 2.1520 -1.8349 -5.5105 27 6 1.6927 -1.1514 -4.4019 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6052 -0.2617 2.1370 32 1 1.7515 -1.7715 1.2056 33 1 3.9994 -1.0729 0.4261 34 1 3.8531 0.4369 1.3574 35 1 6.8072 -2.0065 4.0806 36 1 2.9172 -1.1207 -1.0286 37 1 1.0871 0.6162 -2.5525 38 1 2.7590 1.0461 -2.1182 39 1 4.6396 -0.0720 -3.1605 40 1 5.4703 -1.2952 -5.1280 41 1 3.9670 -4.5001 -6.0494 42 1 2.4318 -3.9914 -6.7925 43 1 3.4642 -4.1333 -9.0381 44 1 3.5930 -5.6914 -8.1858 45 1 5.7400 -5.0509 -9.2909 46 1 5.9084 -5.1579 -7.5210 47 1 5.4822 -2.6024 -9.1375 48 1 6.9992 -3.1075 -8.3536 49 1 5.7622 -1.4651 -6.9565 50 1 5.8870 -3.0436 -6.1439 51 1 1.4526 -2.3262 -6.1708 52 1 0.6335 -1.1087 -4.1951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480294.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:03 Heat of formation + Delta-G solvation = 8.871446 kcal Electronic energy + Delta-G solvation = -26245.034374 eV Core-core repulsion = 22822.051105 eV Total energy + Delta-G solvation = -3422.983269 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52307 -38.45064 -37.03766 -34.38927 -33.10763 -31.82170 -31.73295 -30.52094 -29.87844 -28.55981 -25.71937 -25.01835 -24.17933 -23.41516 -21.83663 -21.11913 -20.84118 -19.91043 -19.59419 -17.70503 -16.84331 -15.90796 -15.67936 -15.32796 -15.23352 -14.83028 -14.66996 -14.37148 -14.23251 -14.12685 -13.70551 -13.50028 -13.44590 -13.11728 -12.87997 -12.58040 -12.48208 -12.30702 -12.22944 -11.86681 -11.70213 -11.58439 -11.46239 -11.22519 -11.14196 -11.05133 -10.85265 -10.79783 -10.64119 -10.49626 -9.96426 -9.78760 -9.69999 -9.44018 -9.18601 -8.91443 -8.55405 -8.11387 -7.81588 -6.05383 -4.02954 1.33589 1.43291 3.27667 3.35168 3.37113 3.41957 3.80204 4.39877 4.42903 4.45652 4.56573 4.64836 4.78273 4.87316 4.93121 5.00932 5.01339 5.14048 5.23901 5.26759 5.28142 5.34412 5.40988 5.43775 5.47416 5.51400 5.54528 5.61655 5.68468 5.71788 5.73179 5.78360 5.83259 5.87029 5.98912 6.06128 6.11718 6.20912 6.25490 6.32365 6.40507 6.44335 6.70045 6.72240 6.75767 6.85823 6.86638 7.21179 7.27456 7.29991 7.52332 7.76063 7.80571 8.53696 9.00431 9.57179 11.08257 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.002999 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.720587 B = 9333.294460 C =10882.604556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.079 3.921 3 H 0.038 0.962 4 C -0.106 4.106 5 C -0.015 4.015 6 C -0.517 4.517 7 H 0.072 0.928 8 C 0.066 3.934 9 N -0.903 5.903 10 Si 0.880 3.120 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.267 1.267 14 N -0.682 5.682 15 C 0.099 3.901 16 C -0.100 4.100 17 C -0.086 4.086 18 C -0.170 4.170 19 C 0.106 3.894 20 N -0.489 5.489 21 C 0.057 3.943 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.118 4.118 25 C 0.049 3.951 26 C -0.143 4.143 27 C -0.073 4.073 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.013 0.987 34 H 0.007 0.993 35 H 0.263 0.737 36 H 0.350 0.650 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.044 0.956 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.082 0.918 50 H 0.046 0.954 51 H 0.121 0.879 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.965 -0.612 -26.124 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.030 4.030 3 H 0.056 0.944 4 C -0.144 4.144 5 C -0.052 4.052 6 C -0.555 4.555 7 H 0.090 0.910 8 C -0.135 4.135 9 N -0.543 5.543 10 Si 0.707 3.293 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.192 1.192 14 N -0.316 5.316 15 C -0.030 4.030 16 C -0.101 4.101 17 C -0.105 4.105 18 C -0.191 4.191 19 C 0.009 3.991 20 N -0.204 5.204 21 C -0.069 4.069 22 C -0.156 4.156 23 C -0.162 4.162 24 C -0.156 4.156 25 C -0.078 4.078 26 C -0.163 4.163 27 C -0.092 4.092 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.031 0.969 34 H 0.026 0.974 35 H 0.072 0.928 36 H 0.171 0.829 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.100 0.900 50 H 0.064 0.936 51 H 0.139 0.861 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.584 -0.738 -26.655 27.243 hybrid contribution 1.938 0.655 0.400 2.084 sum -3.646 -0.083 -26.255 26.507 Atomic orbital electron populations 1.21777 0.95421 1.01893 1.00276 1.21669 0.94927 0.95994 0.90445 0.94443 1.21662 0.97996 1.00147 0.94604 1.19607 0.92051 0.96134 0.97418 1.21133 0.92906 1.34194 1.07313 0.90979 1.25045 0.98421 0.95019 0.95049 1.69920 1.14582 1.43532 1.26220 0.86779 0.80679 0.79716 0.82079 1.20400 1.21388 1.19189 1.60657 1.34612 1.32325 1.04041 1.20878 1.00174 0.93084 0.88852 1.19767 0.93170 1.00359 0.96848 1.20968 0.95168 0.97970 0.96431 1.21224 0.99171 1.03029 0.95649 1.18884 0.93663 0.97483 0.89093 1.59079 1.11244 1.13576 1.36522 1.22245 1.00935 0.86064 0.97633 1.21627 0.96135 1.00256 0.97604 1.21609 0.95896 0.96671 1.01989 1.21617 1.00478 0.95904 0.97582 1.22276 0.86212 1.01589 0.97712 1.20714 0.93506 1.03100 0.98958 1.20854 0.99536 0.95523 0.93287 0.93723 0.92226 0.92888 0.92083 0.91833 0.96882 0.97446 0.92768 0.82878 0.90651 0.94808 0.86228 0.85854 0.93815 0.89993 0.90994 0.91137 0.91610 0.92029 0.91020 0.91184 0.89995 0.93606 0.86065 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.41 37.16 0.35 -1.55 16 2 C 0.08 1.30 2.65 -67.71 -0.18 1.12 16 3 H 0.04 0.62 7.80 -51.93 -0.40 0.22 16 4 C -0.11 -2.11 4.74 -26.73 -0.13 -2.24 16 5 C -0.01 -0.35 3.87 -27.88 -0.11 -0.45 16 6 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 7 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 8 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 10 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 14 N -0.68 -10.96 6.30 -107.98 -0.68 -11.64 16 15 C 0.10 1.36 5.61 -4.97 -0.03 1.34 16 16 C -0.10 -1.34 5.40 -104.59 -0.56 -1.91 16 17 C -0.09 -1.16 9.69 -39.61 -0.38 -1.54 16 18 C -0.17 -2.12 8.82 -39.38 -0.35 -2.47 16 19 C 0.11 1.27 5.64 -83.79 -0.47 0.79 16 20 N -0.49 -5.03 4.70 -171.15 -0.80 -5.84 16 21 C 0.06 0.51 5.26 -3.83 -0.02 0.49 16 22 C -0.12 -0.84 6.09 -26.65 -0.16 -1.00 16 23 C -0.12 -0.84 6.00 -26.61 -0.16 -1.00 16 24 C -0.12 -0.85 6.09 -26.65 -0.16 -1.02 16 25 C 0.05 0.44 4.15 -3.84 -0.02 0.43 16 26 C -0.14 -1.66 9.16 -39.38 -0.36 -2.02 16 27 C -0.07 -0.89 9.69 -39.62 -0.38 -1.28 16 28 H 0.04 0.56 7.45 -51.92 -0.39 0.17 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.01 0.31 5.48 -51.93 -0.28 0.02 16 34 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 36 H 0.35 6.27 6.46 -39.29 -0.25 6.02 16 37 H 0.08 0.95 7.38 -51.93 -0.38 0.56 16 38 H 0.03 0.47 8.00 -51.93 -0.42 0.06 16 39 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.12 1.36 5.81 -52.49 -0.30 1.06 16 41 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.71 6.70 -51.93 -0.35 0.36 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 49 H 0.08 0.73 6.98 -51.93 -0.36 0.37 16 50 H 0.05 0.44 7.74 -51.93 -0.40 0.04 16 51 H 0.12 1.21 7.15 -52.48 -0.38 0.83 16 52 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 397.08 15.07 5.98 5.98 Total: -1.00 -30.74 397.08 -12.35 -43.09 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -9.40 Total: 4.21 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -3.56 Total: -25.66 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.71 Total: -44.80 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.74 -12.35 -43.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480294.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.958 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds