Wall clock time and date at job start Tue Mar 31 2020 11:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47191 * 2 1 4 4 C 1.53007 * 109.46638 * 120.00038 * 2 1 3 5 5 C 1.53000 * 109.46772 * 184.99973 * 4 2 1 6 6 C 1.50699 * 109.46847 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00317 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99792 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99604 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00168 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46838 * 90.00387 * 10 8 6 12 12 H 1.48495 * 109.47276 * 210.00255 * 10 8 6 13 13 H 1.48497 * 109.47311 * 330.00597 * 10 8 6 14 14 N 1.46902 * 109.47197 * 239.99431 * 2 1 3 15 15 C 1.46906 * 110.99573 * 85.00442 * 14 2 1 16 16 C 1.50699 * 109.46990 * 180.02562 * 15 14 2 17 17 C 1.38287 * 119.92364 * 269.72897 * 16 15 14 18 18 C 1.38103 * 120.07049 * 179.72823 * 17 16 15 19 19 C 1.38907 * 119.92661 * 0.54128 * 18 17 16 20 20 N 1.39676 * 120.07328 * 179.70864 * 19 18 17 21 21 C 1.46854 * 111.00051 * 124.23515 * 20 19 18 22 22 C 1.53037 * 109.52283 * 174.16214 * 21 20 19 23 23 C 1.53115 * 109.28358 * 59.17323 * 22 21 20 24 24 C 1.53120 * 109.15982 * 302.35077 * 23 22 21 25 25 C 1.46845 * 111.00400 * 0.02562 * 20 19 18 26 26 C 1.38908 * 119.85094 * 359.72850 * 19 18 17 27 27 C 1.38102 * 119.92433 * 0.02562 * 26 19 18 28 28 H 1.09011 * 109.46887 * 60.00236 * 1 2 3 29 29 H 1.08999 * 109.47708 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47499 * 300.00664 * 1 2 3 31 31 H 1.09003 * 109.47093 * 304.99781 * 4 2 1 32 32 H 1.08994 * 109.46960 * 64.99841 * 4 2 1 33 33 H 1.09003 * 109.47155 * 299.99770 * 5 4 2 34 34 H 1.09000 * 109.47401 * 59.99743 * 5 4 2 35 35 H 0.97007 * 119.99756 * 179.97438 * 9 8 6 36 36 H 1.00896 * 111.00219 * 208.96081 * 14 2 1 37 37 H 1.09002 * 109.46991 * 299.99841 * 15 14 2 38 38 H 1.09000 * 109.47202 * 60.00133 * 15 14 2 39 39 H 1.08002 * 119.96153 * 359.97438 * 17 16 15 40 40 H 1.08000 * 120.03699 * 180.27158 * 18 17 16 41 41 H 1.08998 * 109.45528 * 294.17354 * 21 20 19 42 42 H 1.08999 * 109.46150 * 54.14095 * 21 20 19 43 43 H 1.09006 * 109.49993 * 299.23028 * 22 21 20 44 44 H 1.09000 * 109.50099 * 179.12066 * 22 21 20 45 45 H 1.08995 * 109.52659 * 182.44055 * 23 22 21 46 46 H 1.09003 * 109.51859 * 62.24782 * 23 22 21 47 47 H 1.08998 * 109.50030 * 297.70557 * 24 23 22 48 48 H 1.09007 * 109.50182 * 177.59351 * 24 23 22 49 49 H 1.09004 * 109.45937 * 305.86036 * 25 20 19 50 50 H 1.08998 * 109.45956 * 65.82040 * 25 20 19 51 51 H 1.08003 * 120.03900 * 179.97438 * 26 19 18 52 52 H 1.08001 * 119.96191 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.6134 1.3138 6 6 4.0670 -1.3243 2.5439 7 1 3.3685 -1.8047 3.2131 8 6 5.4183 -1.3606 2.8157 9 7 5.8565 -1.9806 3.8896 10 14 6.6264 -0.5291 1.6588 11 1 6.8310 0.8786 2.0851 12 1 7.9236 -1.2509 1.6954 13 1 6.0849 -0.5539 0.2763 14 7 2.0197 -0.6926 -1.1994 15 6 2.0825 0.2225 -2.3469 16 6 2.5874 -0.5220 -3.5560 17 6 3.9440 -0.5690 -3.8204 18 6 4.4104 -1.2551 -4.9244 19 6 3.5144 -1.8888 -5.7760 20 7 3.9824 -2.5785 -6.8968 21 6 3.5173 -3.9714 -6.8898 22 6 3.9247 -4.6532 -8.1979 23 6 5.4485 -4.6049 -8.3401 24 6 5.9114 -3.1460 -8.2958 25 6 5.4465 -2.5080 -6.9848 26 6 2.1520 -1.8349 -5.5105 27 6 1.6927 -1.1514 -4.4019 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6052 -0.2617 2.1370 32 1 1.7515 -1.7715 1.2056 33 1 3.9994 -1.0729 0.4261 34 1 3.8531 0.4369 1.3574 35 1 6.8072 -2.0065 4.0806 36 1 2.9172 -1.1207 -1.0286 37 1 1.0871 0.6162 -2.5525 38 1 2.7590 1.0461 -2.1182 39 1 4.6396 -0.0720 -3.1605 40 1 5.4703 -1.2952 -5.1280 41 1 3.9670 -4.5001 -6.0494 42 1 2.4318 -3.9914 -6.7925 43 1 3.4642 -4.1333 -9.0381 44 1 3.5930 -5.6914 -8.1858 45 1 5.7400 -5.0509 -9.2909 46 1 5.9084 -5.1579 -7.5210 47 1 5.4822 -2.6024 -9.1375 48 1 6.9992 -3.1075 -8.3536 49 1 5.7622 -1.4651 -6.9565 50 1 5.8870 -3.0436 -6.1439 51 1 1.4526 -2.3262 -6.1708 52 1 0.6335 -1.1087 -4.1951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172480294.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:02 Heat of formation + Delta-G solvation = -8.098911 kcal Electronic energy + Delta-G solvation = -26245.770264 eV Core-core repulsion = 22822.051105 eV Total energy + Delta-G solvation = -3423.719159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.34318 -39.38889 -38.25110 -35.52694 -34.80024 -33.19038 -32.57705 -31.47142 -31.28613 -29.58791 -27.25298 -26.16059 -24.94047 -24.35778 -22.86707 -22.65238 -21.72658 -21.11015 -20.57824 -18.99470 -18.49571 -16.98175 -16.66456 -16.57124 -16.37781 -16.01785 -15.62949 -15.58089 -15.05066 -15.00528 -14.89475 -14.54878 -14.45866 -14.37885 -14.18770 -14.01022 -13.55826 -13.37596 -13.19817 -13.17499 -12.97347 -12.87505 -12.80463 -12.23762 -12.21591 -11.99654 -11.91935 -11.72869 -11.71995 -11.60350 -11.40997 -11.34816 -11.30759 -11.12246 -10.79030 -10.55049 -9.85258 -9.33066 -8.71874 -8.32033 -6.35707 0.39112 0.49205 1.31057 1.33021 1.44359 2.32313 2.59023 2.90623 3.02980 3.45945 3.75256 3.81445 3.93935 3.96927 4.00193 4.04830 4.06621 4.17545 4.31231 4.33863 4.40363 4.44799 4.48445 4.50272 4.59174 4.62887 4.70519 4.72786 4.75393 4.82811 4.87636 4.88759 4.92728 5.01243 5.04713 5.08245 5.12540 5.14326 5.18794 5.21780 5.35404 5.38473 5.42945 5.43780 5.51030 5.54370 5.64906 5.75312 5.83653 6.06313 6.21759 6.26828 6.35075 6.42728 6.72482 7.28507 8.85058 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.002999 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.720587 B = 9333.294460 C =10882.604556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.086 3.914 3 H 0.041 0.959 4 C -0.099 4.099 5 C -0.008 4.008 6 C -0.531 4.531 7 H 0.031 0.969 8 C 0.003 3.997 9 N -0.952 5.952 10 Si 0.950 3.050 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.247 1.247 14 N -0.686 5.686 15 C 0.103 3.897 16 C -0.114 4.114 17 C -0.100 4.100 18 C -0.180 4.180 19 C 0.102 3.898 20 N -0.491 5.491 21 C 0.054 3.946 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.114 4.114 25 C 0.046 3.954 26 C -0.146 4.146 27 C -0.075 4.075 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.019 0.981 34 H 0.013 0.987 35 H 0.266 0.734 36 H 0.337 0.663 37 H 0.091 0.909 38 H 0.032 0.968 39 H 0.116 0.884 40 H 0.132 0.868 41 H 0.032 0.968 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.038 0.962 51 H 0.138 0.862 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.221 0.100 -29.057 29.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.023 4.023 3 H 0.059 0.941 4 C -0.137 4.137 5 C -0.046 4.046 6 C -0.569 4.569 7 H 0.049 0.951 8 C -0.193 4.193 9 N -0.592 5.592 10 Si 0.774 3.226 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.170 1.170 14 N -0.319 5.319 15 C -0.025 4.025 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.201 4.201 19 C 0.004 3.996 20 N -0.207 5.207 21 C -0.071 4.071 22 C -0.152 4.152 23 C -0.162 4.162 24 C -0.152 4.152 25 C -0.081 4.081 26 C -0.166 4.166 27 C -0.094 4.094 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.031 0.969 35 H 0.075 0.925 36 H 0.156 0.844 37 H 0.109 0.891 38 H 0.050 0.950 39 H 0.134 0.866 40 H 0.150 0.850 41 H 0.050 0.950 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.100 0.900 49 H 0.099 0.901 50 H 0.056 0.944 51 H 0.156 0.844 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.868 -0.022 -29.607 30.182 hybrid contribution 1.978 0.364 1.345 2.419 sum -3.890 0.342 -28.262 28.530 Atomic orbital electron populations 1.21717 0.93220 1.02065 1.01715 1.21581 0.96578 0.95350 0.88822 0.94129 1.21540 0.95497 0.99993 0.96687 1.19522 0.94598 0.95446 0.95008 1.21498 0.92647 1.34194 1.08523 0.95105 1.26034 1.00679 0.95757 0.96864 1.70076 1.15282 1.45392 1.28495 0.85654 0.77762 0.78731 0.80478 1.19246 1.20969 1.17010 1.60727 1.33722 1.32972 1.04442 1.20902 1.01035 0.92560 0.88053 1.19795 0.93354 1.01232 0.97151 1.21060 0.95403 0.98578 0.96933 1.21376 0.99874 1.03174 0.95649 1.19099 0.93908 0.97269 0.89290 1.59141 1.11954 1.14106 1.35459 1.22321 1.01081 0.85332 0.98348 1.21620 0.96398 1.00766 0.96401 1.21626 0.95606 0.96334 1.02593 1.21611 1.01220 0.96022 0.96343 1.22342 0.85531 1.01662 0.98530 1.20938 0.93759 1.02882 0.99042 1.21042 1.00127 0.95097 0.93148 0.91736 0.92696 0.92017 0.92434 0.93090 0.96320 0.96914 0.92515 0.84362 0.89094 0.95027 0.86596 0.85024 0.94983 0.89659 0.90846 0.89844 0.90177 0.92453 0.91042 0.89989 0.90145 0.94351 0.84427 0.84449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 9.41 71.98 0.68 -2.63 16 2 C 0.09 2.68 2.65 44.92 0.12 2.80 16 3 H 0.04 1.26 7.80 -2.39 -0.02 1.24 16 4 C -0.10 -3.92 4.74 30.60 0.15 -3.78 16 5 C -0.01 -0.39 3.87 29.85 0.12 -0.27 16 6 C -0.53 -31.21 9.66 25.60 0.25 -30.96 16 7 H 0.03 2.00 7.99 -2.91 -0.02 1.97 16 8 C 0.00 0.19 5.47 84.66 0.46 0.66 16 9 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 10 Si 0.95 44.89 27.47 68.60 1.88 46.78 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 13 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 14 N -0.69 -21.01 6.30 -495.55 -3.12 -24.14 16 15 C 0.10 2.64 5.61 85.56 0.48 3.12 16 16 C -0.11 -2.90 5.40 -19.84 -0.11 -3.01 16 17 C -0.10 -2.63 9.69 22.25 0.22 -2.41 16 18 C -0.18 -4.35 8.82 22.40 0.20 -4.15 16 19 C 0.10 2.32 5.64 38.21 0.22 2.54 16 20 N -0.49 -9.47 4.70 -695.40 -3.27 -12.74 16 21 C 0.05 0.90 5.26 86.32 0.45 1.36 16 22 C -0.11 -1.39 6.09 30.64 0.19 -1.21 16 23 C -0.12 -1.44 6.00 30.67 0.18 -1.25 16 24 C -0.11 -1.45 6.09 30.64 0.19 -1.26 16 25 C 0.05 0.78 4.15 86.32 0.36 1.14 16 26 C -0.15 -3.16 9.16 22.40 0.21 -2.96 16 27 C -0.08 -1.71 9.69 22.25 0.22 -1.49 16 28 H 0.06 1.41 7.45 -2.38 -0.02 1.39 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.05 2.11 8.14 -2.39 -0.02 2.10 16 33 H 0.02 0.86 5.48 -2.39 -0.01 0.85 16 34 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 35 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 36 H 0.34 11.76 6.46 -89.70 -0.58 11.18 16 37 H 0.09 2.03 7.38 -2.39 -0.02 2.02 16 38 H 0.03 0.83 8.00 -2.39 -0.02 0.81 16 39 H 0.12 3.01 8.06 -2.91 -0.02 2.99 16 40 H 0.13 2.83 5.81 -2.91 -0.02 2.81 16 41 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.09 1.33 6.70 -2.39 -0.02 1.31 16 43 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 48 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 49 H 0.08 1.36 6.98 -2.38 -0.02 1.34 16 50 H 0.04 0.70 7.74 -2.39 -0.02 0.69 16 51 H 0.14 2.45 7.15 -2.91 -0.02 2.43 16 52 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -66.96 397.08 0.59 -66.36 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.24 Total: 27.93 kcal Atomic # 6 Polarization: -48.33 SS G_CDS: 4.56 Total: -43.77 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -6.09 Total: -97.30 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.78 kcal Total: -66.96 0.59 -66.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480294.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.266 kcal (2) G-P(sol) polarization free energy of solvation -66.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds