Wall clock time and date at job start Tue Mar 31 2020 11:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.53001 * 109.47049 * 174.99763 * 4 2 1 6 6 C 1.50703 * 109.47033 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00117 * 0.02562 * 6 5 4 8 8 C 1.37870 * 119.99962 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00182 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00189 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.46669 * 60.00193 * 10 8 6 12 12 H 1.48499 * 109.47329 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47030 * 300.00374 * 10 8 6 14 14 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 15 15 C 1.46903 * 110.99807 * 275.00039 * 14 2 1 16 16 C 1.50705 * 109.46848 * 180.02562 * 15 14 2 17 17 C 1.38286 * 119.92083 * 269.72444 * 16 15 14 18 18 C 1.38108 * 120.06861 * 179.72676 * 17 16 15 19 19 C 1.38904 * 119.92583 * 0.54728 * 18 17 16 20 20 N 1.39677 * 120.07734 * 179.70600 * 19 18 17 21 21 C 1.46844 * 111.00392 * 124.23148 * 20 19 18 22 22 C 1.53029 * 109.52528 * 174.16087 * 21 20 19 23 23 C 1.53125 * 109.27713 * 59.18086 * 22 21 20 24 24 C 1.53121 * 109.16031 * 302.34435 * 23 22 21 25 25 C 1.46848 * 110.99545 * 0.02562 * 20 19 18 26 26 C 1.38914 * 119.85440 * 359.72868 * 19 18 17 27 27 C 1.38107 * 119.92260 * 359.97438 * 26 19 18 28 28 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 29 29 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46934 * 294.99762 * 4 2 1 32 32 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 33 33 H 1.08998 * 109.47252 * 299.99805 * 5 4 2 34 34 H 1.08998 * 109.47250 * 59.99881 * 5 4 2 35 35 H 0.97002 * 120.00223 * 179.97438 * 9 8 6 36 36 H 1.00902 * 111.00121 * 38.95441 * 14 2 1 37 37 H 1.09001 * 109.47143 * 300.00154 * 15 14 2 38 38 H 1.08998 * 109.47112 * 60.00049 * 15 14 2 39 39 H 1.08002 * 119.96324 * 359.97438 * 17 16 15 40 40 H 1.07996 * 120.03559 * 180.27863 * 18 17 16 41 41 H 1.08999 * 109.46452 * 294.18239 * 21 20 19 42 42 H 1.09008 * 109.45784 * 54.14671 * 21 20 19 43 43 H 1.09004 * 109.50645 * 299.24105 * 22 21 20 44 44 H 1.09001 * 109.50626 * 179.12328 * 22 21 20 45 45 H 1.09000 * 109.52007 * 182.44359 * 23 22 21 46 46 H 1.08999 * 109.52095 * 62.25112 * 23 22 21 47 47 H 1.08997 * 109.49997 * 297.71636 * 24 23 22 48 48 H 1.08994 * 109.49984 * 177.59407 * 24 23 22 49 49 H 1.08999 * 109.46517 * 305.85532 * 25 20 19 50 50 H 1.09001 * 109.46104 * 65.82436 * 25 20 19 51 51 H 1.07991 * 120.04434 * 179.97438 * 26 19 18 52 52 H 1.07997 * 119.96466 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3240 -2.5439 7 1 3.3688 -1.8044 -3.2131 8 6 5.4184 -1.3602 -2.8157 9 7 6.2690 -0.7748 -2.0011 10 14 6.0413 -2.2419 -4.3402 11 1 5.4486 -1.6172 -5.5501 12 1 7.5213 -2.1370 -4.4028 13 1 5.6491 -3.6729 -4.2793 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2226 2.3469 16 6 2.5886 -0.5216 3.5557 17 6 1.6943 -1.1473 4.4049 18 6 2.1551 -1.8349 5.5104 19 6 3.5177 -1.8879 5.7752 20 7 3.9867 -2.5773 6.8958 21 6 4.9707 -3.5976 6.5123 22 6 5.5683 -4.2304 7.7710 23 6 4.4469 -4.8623 8.6003 24 6 3.4110 -3.7888 8.9455 25 6 2.8760 -3.1688 7.6526 26 6 4.4128 -1.2535 4.9232 27 6 3.9458 -0.5728 3.8160 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -1.7714 -1.2056 32 1 1.6054 -0.2616 -2.1370 33 1 3.8532 0.4371 -1.3574 34 1 3.9995 -1.0726 -0.4260 35 1 7.2196 -0.8005 -2.1921 36 1 1.4496 -1.4980 1.4100 37 1 2.7589 1.0462 2.1182 38 1 1.0871 0.6162 2.5525 39 1 0.6347 -1.1016 4.2010 40 1 1.4565 -2.3271 6.1707 41 1 4.4818 -4.3676 5.9157 42 1 5.7648 -3.1342 5.9267 43 1 6.0694 -3.4632 8.3613 44 1 6.2873 -4.9985 7.4859 45 1 4.8623 -5.2764 9.5190 46 1 3.9710 -5.6560 8.0244 47 1 3.8783 -3.0147 9.5542 48 1 2.5887 -4.2415 9.4995 49 1 2.1486 -2.3942 7.8953 50 1 2.3969 -3.9409 7.0506 51 1 5.4728 -1.2924 5.1263 52 1 4.6411 -0.0796 3.1530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480295.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:05 Heat of formation + Delta-G solvation = 7.759815 kcal Electronic energy + Delta-G solvation = -26089.002255 eV Core-core repulsion = 22665.970783 eV Total energy + Delta-G solvation = -3423.031473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.44636 -38.36373 -36.89249 -34.28836 -33.07326 -31.74402 -31.58028 -30.43177 -29.46808 -28.24105 -25.45273 -24.87776 -24.11985 -23.37719 -21.76112 -21.28066 -20.80697 -19.93627 -19.63065 -17.61552 -16.09179 -15.78908 -15.60515 -15.21044 -15.11474 -14.80858 -14.44718 -14.35583 -14.20160 -14.03528 -13.66026 -13.37330 -13.34513 -12.98791 -12.87125 -12.49953 -12.32607 -12.25077 -12.02855 -11.75669 -11.55194 -11.49709 -11.19029 -11.11058 -11.06584 -10.94095 -10.76763 -10.73249 -10.56032 -10.43962 -10.14936 -9.65310 -9.56182 -9.16688 -8.87401 -8.80582 -8.19777 -7.89031 -7.68597 -5.85103 -3.85967 1.43307 1.53480 3.40423 3.44437 3.47094 3.49602 3.89544 4.44951 4.49929 4.56716 4.61530 4.73425 4.84106 4.94392 5.00329 5.05973 5.09898 5.20208 5.28327 5.33025 5.39851 5.41665 5.49879 5.50222 5.52658 5.56679 5.58920 5.61633 5.70833 5.75731 5.78467 5.79531 5.86268 5.97934 6.04120 6.12804 6.17985 6.29482 6.31032 6.42542 6.44885 6.71518 6.80946 6.84731 6.93756 6.96437 7.30620 7.35688 7.55725 7.86436 7.88553 8.12344 8.28056 8.61563 9.22900 9.76244 11.25937 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.002692 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.701266 B =10397.904974 C =12046.423720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.083 3.917 3 H 0.072 0.928 4 C -0.098 4.098 5 C 0.030 3.970 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.665 5.665 15 C 0.101 3.899 16 C -0.099 4.099 17 C -0.091 4.091 18 C -0.175 4.175 19 C 0.105 3.895 20 N -0.489 5.489 21 C 0.056 3.944 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.118 4.118 25 C 0.051 3.949 26 C -0.139 4.139 27 C -0.066 4.066 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.006 0.994 34 H 0.033 0.967 35 H 0.258 0.742 36 H 0.334 0.666 37 H 0.079 0.921 38 H 0.029 0.971 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.043 0.957 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.081 0.919 50 H 0.044 0.956 51 H 0.123 0.877 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.264 -3.714 22.735 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.026 4.026 3 H 0.090 0.910 4 C -0.136 4.136 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.295 5.295 15 C -0.028 4.028 16 C -0.100 4.100 17 C -0.110 4.110 18 C -0.195 4.195 19 C 0.008 3.992 20 N -0.204 5.204 21 C -0.069 4.069 22 C -0.157 4.157 23 C -0.161 4.161 24 C -0.156 4.156 25 C -0.076 4.076 26 C -0.160 4.160 27 C -0.085 4.085 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.025 0.975 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.152 0.848 37 H 0.097 0.903 38 H 0.047 0.953 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.061 0.939 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.087 0.913 49 H 0.099 0.901 50 H 0.062 0.938 51 H 0.141 0.859 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.132 -3.308 22.951 24.260 hybrid contribution -0.932 -0.883 -1.112 1.699 sum -8.064 -4.192 21.839 23.655 Atomic orbital electron populations 1.22544 0.98720 1.01480 1.01220 1.21757 0.90847 0.98398 0.91615 0.90992 1.21629 1.00645 0.98345 0.93012 1.18985 0.88285 0.96418 0.96996 1.21320 0.91828 1.34024 1.08487 0.93221 1.24988 0.97139 0.95805 0.96476 1.69966 1.02157 1.44396 1.36945 0.86759 0.77569 0.80313 0.83900 1.20438 1.21409 1.20404 1.60570 1.57680 1.08791 1.02503 1.20870 0.98675 0.94936 0.88290 1.19771 0.93583 1.00274 0.96366 1.20843 0.99016 0.96907 0.94240 1.21147 0.94529 1.04305 0.99555 1.18878 0.92872 0.97345 0.90139 1.59068 1.14855 1.26553 1.19949 1.22252 0.94940 0.92660 0.97073 1.21632 0.97761 1.00014 0.96268 1.21608 0.96620 0.97824 1.00052 1.21620 0.98840 0.98391 0.96751 1.22251 0.92575 0.98077 0.94697 1.20781 0.99120 1.00393 0.95663 1.21015 0.95164 0.96834 0.95503 0.93759 0.92274 0.92845 0.93550 0.93569 0.97533 0.94884 0.93234 0.84772 0.90298 0.95318 0.86632 0.86103 0.93870 0.89785 0.90952 0.91100 0.91662 0.92120 0.91002 0.91306 0.90106 0.93817 0.85943 0.85249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 9.16 37.16 0.34 -2.13 16 2 C 0.08 1.42 2.59 -67.71 -0.18 1.24 16 3 H 0.07 1.27 7.80 -51.93 -0.40 0.86 16 4 C -0.10 -2.07 4.83 -26.73 -0.13 -2.20 16 5 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 6 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 7 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.64 13.29 55.43 0.74 -26.90 16 10 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 N -0.67 -11.00 5.69 -107.99 -0.61 -11.61 16 15 C 0.10 1.45 5.61 -4.97 -0.03 1.42 16 16 C -0.10 -1.38 5.40 -104.58 -0.56 -1.94 16 17 C -0.09 -1.12 9.69 -39.61 -0.38 -1.51 16 18 C -0.17 -2.08 8.82 -39.38 -0.35 -2.42 16 19 C 0.10 1.31 5.64 -83.79 -0.47 0.84 16 20 N -0.49 -5.27 4.70 -171.15 -0.80 -6.08 16 21 C 0.06 0.56 5.26 -3.84 -0.02 0.54 16 22 C -0.12 -0.93 6.09 -26.65 -0.16 -1.09 16 23 C -0.12 -0.86 6.00 -26.60 -0.16 -1.02 16 24 C -0.12 -0.85 6.09 -26.65 -0.16 -1.01 16 25 C 0.05 0.45 4.15 -3.83 -0.02 0.43 16 26 C -0.14 -1.87 9.16 -39.38 -0.36 -2.23 16 27 C -0.07 -0.96 9.69 -39.61 -0.38 -1.35 16 28 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.03 0.95 7.75 -51.93 -0.40 0.54 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.33 5.17 8.46 -39.29 -0.33 4.83 16 37 H 0.08 1.19 8.00 -51.93 -0.42 0.77 16 38 H 0.03 0.37 7.38 -51.93 -0.38 -0.02 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 40 H 0.12 1.20 5.81 -52.49 -0.30 0.89 16 41 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.86 6.71 -51.92 -0.35 0.51 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.69 6.98 -51.93 -0.36 0.33 16 50 H 0.04 0.39 7.74 -51.93 -0.40 -0.01 16 51 H 0.12 1.51 7.15 -52.49 -0.38 1.14 16 52 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 403.22 15.07 6.08 6.08 Total: -1.00 -31.49 403.22 -12.78 -44.27 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -9.58 Total: 2.66 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -3.57 Total: -25.67 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.68 Total: -44.59 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.49 -12.78 -44.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480295.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.029 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds