Wall clock time and date at job start Tue Mar 31 2020 11:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.53001 * 109.47049 * 174.99763 * 4 2 1 6 6 C 1.50703 * 109.47033 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00117 * 0.02562 * 6 5 4 8 8 C 1.37870 * 119.99962 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00182 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00189 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.46669 * 60.00193 * 10 8 6 12 12 H 1.48499 * 109.47329 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47030 * 300.00374 * 10 8 6 14 14 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 15 15 C 1.46903 * 110.99807 * 275.00039 * 14 2 1 16 16 C 1.50705 * 109.46848 * 180.02562 * 15 14 2 17 17 C 1.38286 * 119.92083 * 269.72444 * 16 15 14 18 18 C 1.38108 * 120.06861 * 179.72676 * 17 16 15 19 19 C 1.38904 * 119.92583 * 0.54728 * 18 17 16 20 20 N 1.39677 * 120.07734 * 179.70600 * 19 18 17 21 21 C 1.46844 * 111.00392 * 124.23148 * 20 19 18 22 22 C 1.53029 * 109.52528 * 174.16087 * 21 20 19 23 23 C 1.53125 * 109.27713 * 59.18086 * 22 21 20 24 24 C 1.53121 * 109.16031 * 302.34435 * 23 22 21 25 25 C 1.46848 * 110.99545 * 0.02562 * 20 19 18 26 26 C 1.38914 * 119.85440 * 359.72868 * 19 18 17 27 27 C 1.38107 * 119.92260 * 359.97438 * 26 19 18 28 28 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 29 29 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46934 * 294.99762 * 4 2 1 32 32 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 33 33 H 1.08998 * 109.47252 * 299.99805 * 5 4 2 34 34 H 1.08998 * 109.47250 * 59.99881 * 5 4 2 35 35 H 0.97002 * 120.00223 * 179.97438 * 9 8 6 36 36 H 1.00902 * 111.00121 * 38.95441 * 14 2 1 37 37 H 1.09001 * 109.47143 * 300.00154 * 15 14 2 38 38 H 1.08998 * 109.47112 * 60.00049 * 15 14 2 39 39 H 1.08002 * 119.96324 * 359.97438 * 17 16 15 40 40 H 1.07996 * 120.03559 * 180.27863 * 18 17 16 41 41 H 1.08999 * 109.46452 * 294.18239 * 21 20 19 42 42 H 1.09008 * 109.45784 * 54.14671 * 21 20 19 43 43 H 1.09004 * 109.50645 * 299.24105 * 22 21 20 44 44 H 1.09001 * 109.50626 * 179.12328 * 22 21 20 45 45 H 1.09000 * 109.52007 * 182.44359 * 23 22 21 46 46 H 1.08999 * 109.52095 * 62.25112 * 23 22 21 47 47 H 1.08997 * 109.49997 * 297.71636 * 24 23 22 48 48 H 1.08994 * 109.49984 * 177.59407 * 24 23 22 49 49 H 1.08999 * 109.46517 * 305.85532 * 25 20 19 50 50 H 1.09001 * 109.46104 * 65.82436 * 25 20 19 51 51 H 1.07991 * 120.04434 * 179.97438 * 26 19 18 52 52 H 1.07997 * 119.96466 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3240 -2.5439 7 1 3.3688 -1.8044 -3.2131 8 6 5.4184 -1.3602 -2.8157 9 7 6.2690 -0.7748 -2.0011 10 14 6.0413 -2.2419 -4.3402 11 1 5.4486 -1.6172 -5.5501 12 1 7.5213 -2.1370 -4.4028 13 1 5.6491 -3.6729 -4.2793 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2226 2.3469 16 6 2.5886 -0.5216 3.5557 17 6 1.6943 -1.1473 4.4049 18 6 2.1551 -1.8349 5.5104 19 6 3.5177 -1.8879 5.7752 20 7 3.9867 -2.5773 6.8958 21 6 4.9707 -3.5976 6.5123 22 6 5.5683 -4.2304 7.7710 23 6 4.4469 -4.8623 8.6003 24 6 3.4110 -3.7888 8.9455 25 6 2.8760 -3.1688 7.6526 26 6 4.4128 -1.2535 4.9232 27 6 3.9458 -0.5728 3.8160 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -1.7714 -1.2056 32 1 1.6054 -0.2616 -2.1370 33 1 3.8532 0.4371 -1.3574 34 1 3.9995 -1.0726 -0.4260 35 1 7.2196 -0.8005 -2.1921 36 1 1.4496 -1.4980 1.4100 37 1 2.7589 1.0462 2.1182 38 1 1.0871 0.6162 2.5525 39 1 0.6347 -1.1016 4.2010 40 1 1.4565 -2.3271 6.1707 41 1 4.4818 -4.3676 5.9157 42 1 5.7648 -3.1342 5.9267 43 1 6.0694 -3.4632 8.3613 44 1 6.2873 -4.9985 7.4859 45 1 4.8623 -5.2764 9.5190 46 1 3.9710 -5.6560 8.0244 47 1 3.8783 -3.0147 9.5542 48 1 2.5887 -4.2415 9.4995 49 1 2.1486 -2.3942 7.8953 50 1 2.3969 -3.9409 7.0506 51 1 5.4728 -1.2924 5.1263 52 1 4.6411 -0.0796 3.1530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172480295.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:04 Heat of formation + Delta-G solvation = -9.395331 kcal Electronic energy + Delta-G solvation = -26089.746158 eV Core-core repulsion = 22665.970783 eV Total energy + Delta-G solvation = -3423.775376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.33048 -39.35322 -38.15239 -35.52762 -34.79835 -33.05093 -32.55818 -31.30788 -31.07927 -29.37750 -27.02448 -26.18068 -24.92083 -24.38638 -23.11617 -22.64355 -21.78035 -21.31009 -20.55392 -18.51209 -18.34205 -16.83016 -16.66916 -16.46811 -16.43189 -15.97287 -15.65487 -15.38837 -15.02567 -14.89337 -14.73785 -14.51170 -14.36253 -14.24704 -14.05891 -13.94225 -13.78837 -13.30147 -13.18090 -12.97817 -12.93097 -12.81695 -12.76602 -12.36158 -12.23176 -12.14972 -11.93705 -11.71013 -11.69715 -11.51737 -11.39349 -11.29528 -11.20685 -10.95583 -10.53267 -10.47246 -9.84085 -9.11248 -8.68978 -8.12881 -6.23492 0.40622 0.50504 1.38983 1.42707 1.50287 2.43769 2.60229 2.92575 3.18979 3.51896 3.76407 3.83748 3.96531 3.97301 4.03002 4.08012 4.10388 4.18313 4.31540 4.35995 4.42782 4.48314 4.51241 4.51373 4.59813 4.65260 4.70288 4.77588 4.79748 4.84459 4.89608 4.93806 5.00726 5.05656 5.09854 5.12043 5.15811 5.19626 5.23988 5.30301 5.35886 5.40869 5.44857 5.48309 5.59660 5.78665 5.84542 5.90021 6.04127 6.08636 6.28400 6.35452 6.37663 6.65615 6.96361 7.44361 8.98172 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.002692 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.701266 B =10397.904974 C =12046.423720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.090 3.910 3 H 0.060 0.940 4 C -0.089 4.089 5 C 0.040 3.960 6 C -0.543 4.543 7 H 0.055 0.945 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.961 3.039 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.268 1.268 14 N -0.687 5.687 15 C 0.109 3.891 16 C -0.112 4.112 17 C -0.086 4.086 18 C -0.174 4.174 19 C 0.103 3.897 20 N -0.494 5.494 21 C 0.055 3.945 22 C -0.115 4.115 23 C -0.122 4.122 24 C -0.114 4.114 25 C 0.047 3.953 26 C -0.152 4.152 27 C -0.088 4.088 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.050 0.950 33 H -0.025 1.025 34 H 0.002 0.998 35 H 0.261 0.739 36 H 0.342 0.658 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.036 0.964 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.067 0.933 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.045 0.955 51 H 0.123 0.877 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.248 -5.142 23.564 26.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 H 0.078 0.922 4 C -0.127 4.127 5 C 0.003 3.997 6 C -0.582 4.582 7 H 0.073 0.927 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.785 3.215 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.193 1.193 14 N -0.319 5.319 15 C -0.019 4.019 16 C -0.113 4.113 17 C -0.105 4.105 18 C -0.194 4.194 19 C 0.005 3.995 20 N -0.210 5.210 21 C -0.071 4.071 22 C -0.153 4.153 23 C -0.160 4.160 24 C -0.152 4.152 25 C -0.079 4.079 26 C -0.172 4.172 27 C -0.107 4.107 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.069 0.931 33 H -0.006 1.006 34 H 0.020 0.980 35 H 0.069 0.931 36 H 0.160 0.840 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.106 0.894 49 H 0.104 0.896 50 H 0.063 0.937 51 H 0.141 0.859 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.134 -4.742 23.791 25.922 hybrid contribution -0.259 -0.439 -1.304 1.400 sum -9.393 -5.181 22.487 24.915 Atomic orbital electron populations 1.22386 0.95245 1.02486 1.02566 1.21532 0.93450 0.96913 0.90060 0.92188 1.21466 0.96520 0.99040 0.95641 1.18804 0.92246 0.93722 0.94950 1.21792 0.92516 1.34408 1.09441 0.92666 1.25963 0.97414 0.96537 1.00023 1.70119 1.02529 1.45633 1.39027 0.85578 0.77007 0.79257 0.79642 1.19150 1.20881 1.19319 1.60430 1.58515 1.09731 1.03187 1.20775 0.99468 0.94063 0.87635 1.19785 0.93457 1.01275 0.96826 1.21082 0.99906 0.95834 0.93666 1.21451 0.94582 1.03794 0.99618 1.19054 0.93186 0.96998 0.90220 1.59083 1.15750 1.26952 1.19215 1.22277 0.94511 0.92207 0.98077 1.21624 0.98279 1.00103 0.95307 1.21617 0.96195 0.97700 1.00450 1.21620 0.99464 0.98280 0.95854 1.22378 0.92110 0.98271 0.95165 1.20830 0.99583 1.00914 0.95909 1.20984 0.95630 0.97992 0.96089 0.91669 0.91671 0.91976 0.93550 0.93129 1.00619 0.97953 0.93069 0.83957 0.92183 0.92849 0.84157 0.83638 0.94613 0.90922 0.91210 0.90163 0.90223 0.92057 0.91391 0.89400 0.89570 0.93674 0.85926 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 9.16 71.98 0.66 -3.53 16 2 C 0.09 3.05 2.59 44.92 0.12 3.16 16 3 H 0.06 2.16 7.80 -2.39 -0.02 2.14 16 4 C -0.09 -3.77 4.83 30.59 0.15 -3.63 16 5 C 0.04 2.22 4.86 29.85 0.15 2.37 16 6 C -0.54 -32.48 9.11 25.60 0.23 -32.25 16 7 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 8 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 9 N -0.93 -59.34 13.29 21.44 0.28 -59.05 16 10 Si 0.96 46.04 29.54 68.60 2.03 48.06 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 14 N -0.69 -22.91 5.69 -495.56 -2.82 -25.73 16 15 C 0.11 3.14 5.61 85.56 0.48 3.62 16 16 C -0.11 -3.17 5.40 -19.84 -0.11 -3.27 16 17 C -0.09 -1.99 9.69 22.25 0.22 -1.78 16 18 C -0.17 -3.85 8.82 22.40 0.20 -3.66 16 19 C 0.10 2.56 5.64 38.21 0.22 2.77 16 20 N -0.49 -10.34 4.70 -695.40 -3.27 -13.60 16 21 C 0.05 1.08 5.26 86.32 0.45 1.53 16 22 C -0.12 -1.69 6.09 30.65 0.19 -1.50 16 23 C -0.12 -1.45 6.00 30.68 0.18 -1.27 16 24 C -0.11 -1.38 6.09 30.65 0.19 -1.19 16 25 C 0.05 0.74 4.15 86.33 0.36 1.10 16 26 C -0.15 -4.30 9.16 22.40 0.21 -4.09 16 27 C -0.09 -2.73 9.69 22.25 0.22 -2.52 16 28 H 0.06 1.38 7.45 -2.39 -0.02 1.36 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 33 H -0.02 -1.50 8.14 -2.39 -0.02 -1.51 16 34 H 0.00 0.12 7.75 -2.39 -0.02 0.11 16 35 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 36 H 0.34 10.29 8.46 -89.69 -0.76 9.54 16 37 H 0.06 1.92 8.00 -2.39 -0.02 1.90 16 38 H 0.05 1.27 7.38 -2.39 -0.02 1.25 16 39 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.15 2.47 5.81 -2.91 -0.02 2.45 16 41 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 1.56 6.71 -2.38 -0.02 1.54 16 43 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.09 1.26 6.98 -2.39 -0.02 1.24 16 50 H 0.05 0.71 7.74 -2.39 -0.02 0.69 16 51 H 0.12 3.30 7.15 -2.92 -0.02 3.28 16 52 H 0.11 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -69.77 403.22 0.89 -68.88 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.11 Total: 25.24 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 4.56 Total: -43.80 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -5.80 Total: -98.39 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -69.77 0.89 -68.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480295.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.484 kcal (2) G-P(sol) polarization free energy of solvation -69.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds