Wall clock time and date at job start Tue Mar 31 2020 11:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47126 * 2 1 4 4 C 1.52995 * 109.47088 * 120.00137 * 2 1 3 5 5 C 1.53003 * 109.47245 * 185.00300 * 4 2 1 6 6 C 1.50699 * 109.47327 * 180.02562 * 5 4 2 7 7 H 1.07991 * 119.99985 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99995 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99925 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47209 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47178 * 120.00268 * 10 8 6 13 13 H 1.48506 * 109.46733 * 239.99717 * 10 8 6 14 14 N 1.46901 * 109.47004 * 240.00201 * 2 1 3 15 15 C 1.46898 * 110.99950 * 86.04043 * 14 2 1 16 16 H 1.09002 * 109.50499 * 326.70053 * 15 14 2 17 17 C 1.53118 * 109.53350 * 206.60276 * 15 14 2 18 18 C 1.53120 * 109.16132 * 182.38155 * 17 15 14 19 19 C 1.53041 * 109.27895 * 57.65603 * 18 17 15 20 20 N 1.46847 * 109.51969 * 300.82353 * 19 18 17 21 21 C 1.46907 * 110.99643 * 185.83665 * 20 19 18 22 22 C 1.50695 * 109.47253 * 45.78862 * 21 20 19 23 23 C 1.38233 * 120.00209 * 269.72541 * 22 21 20 24 24 C 1.38231 * 120.00293 * 179.76125 * 23 22 21 25 25 C 1.38241 * 119.99925 * 0.51252 * 24 23 22 26 26 C 1.38232 * 119.99771 * 359.74229 * 25 24 23 27 27 C 1.38233 * 120.00182 * 0.02562 * 26 25 24 28 28 C 1.46845 * 111.20428 * 61.74162 * 20 19 18 29 29 H 1.09004 * 109.46925 * 64.56387 * 1 2 3 30 30 H 1.09000 * 109.46897 * 184.56563 * 1 2 3 31 31 H 1.08995 * 109.46837 * 304.56537 * 1 2 3 32 32 H 1.09000 * 109.47190 * 304.99965 * 4 2 1 33 33 H 1.08994 * 109.47554 * 65.00099 * 4 2 1 34 34 H 1.09000 * 109.46752 * 299.99933 * 5 4 2 35 35 H 1.08997 * 109.47523 * 59.99500 * 5 4 2 36 36 H 0.97004 * 120.00136 * 180.02562 * 9 8 6 37 37 H 1.00899 * 110.99940 * 209.98900 * 14 2 1 38 38 H 1.08995 * 109.52323 * 302.28425 * 17 15 14 39 39 H 1.09002 * 109.52255 * 62.41741 * 17 15 14 40 40 H 1.08999 * 109.50878 * 177.59439 * 18 17 15 41 41 H 1.08999 * 109.50744 * 297.71979 * 18 17 15 42 42 H 1.08993 * 109.46381 * 180.80327 * 19 18 17 43 43 H 1.09002 * 109.46500 * 60.83396 * 19 18 17 44 44 H 1.09000 * 109.46844 * 165.78902 * 21 20 19 45 45 H 1.08997 * 109.47327 * 285.78769 * 21 20 19 46 46 H 1.08001 * 120.00018 * 0.02562 * 23 22 21 47 47 H 1.08005 * 120.00414 * 180.22583 * 24 23 22 48 48 H 1.07995 * 120.00168 * 179.71633 * 25 24 23 49 49 H 1.07997 * 120.00128 * 179.97438 * 26 25 24 50 50 H 1.08001 * 120.00264 * 179.97438 * 27 26 25 51 51 H 1.08998 * 109.46371 * 58.26707 * 28 20 19 52 52 H 1.08997 * 109.46328 * 178.25472 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3137 6 6 4.0673 -1.3242 2.5438 7 1 3.3689 -1.8046 3.2129 8 6 5.4186 -1.3613 2.8150 9 7 6.2692 -0.7767 2.0000 10 14 6.0414 -2.2432 4.3394 11 1 4.8914 -2.8145 5.0853 12 1 6.9632 -3.3357 3.9373 13 1 6.7647 -1.2798 5.2078 14 7 2.0197 -0.6925 -1.1995 15 6 2.1059 0.2285 -2.3407 16 1 1.3094 0.9694 -2.2714 17 6 1.9597 -0.5586 -3.6459 18 6 2.1102 0.4000 -4.8304 19 6 3.4676 1.1014 -4.7435 20 7 3.5578 1.8406 -3.4779 21 6 4.7902 2.6382 -3.4208 22 6 4.9764 3.3692 -4.7254 23 6 5.6873 2.7786 -5.7533 24 6 5.8538 3.4471 -6.9517 25 6 5.3185 4.7107 -7.1185 26 6 4.6121 5.3035 -6.0887 27 6 4.4414 4.6330 -4.8920 28 6 3.4634 0.9349 -2.3259 29 1 -0.3633 0.4414 -0.9281 30 1 -0.3633 -1.0244 0.0818 31 1 -0.3633 0.5830 0.8462 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.9995 -1.0727 0.4260 35 1 3.8533 0.4370 1.3573 36 1 7.2199 -0.8031 2.1905 37 1 2.9094 -1.1347 -1.0238 38 1 2.7327 -1.3253 -3.6974 39 1 0.9770 -1.0291 -3.6795 40 1 2.0497 -0.1613 -5.7628 41 1 1.3138 1.1436 -4.8003 42 1 3.5720 1.7952 -5.5776 43 1 4.2639 0.3583 -4.7876 44 1 4.7186 3.3597 -2.6070 45 1 5.6416 1.9796 -3.2487 46 1 6.1090 1.7931 -5.6217 47 1 6.4062 2.9842 -7.7562 48 1 5.4525 5.2349 -8.0532 49 1 4.1942 6.2908 -6.2188 50 1 3.8899 5.0962 -4.0873 51 1 4.2596 0.1925 -2.3813 52 1 3.5645 1.5078 -1.4042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172481247.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:00 Heat of formation + Delta-G solvation = 6.939813 kcal Electronic energy + Delta-G solvation = -26863.420869 eV Core-core repulsion = 23440.353838 eV Total energy + Delta-G solvation = -3423.067031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.99410 -38.73626 -36.67868 -34.12682 -32.98039 -31.45904 -31.06526 -31.02010 -29.33369 -27.44802 -26.37671 -25.05460 -22.99087 -22.87219 -22.37941 -21.38261 -20.72544 -19.83903 -19.26901 -16.90978 -16.39866 -16.12795 -15.65117 -15.42294 -15.16389 -14.73177 -14.52054 -14.29681 -13.95927 -13.80934 -13.62977 -13.45419 -12.96952 -12.84781 -12.60679 -12.53528 -12.48580 -12.12846 -11.99910 -11.68206 -11.44204 -11.32517 -11.17133 -11.12766 -10.99908 -10.96155 -10.65528 -10.56609 -10.40103 -10.36010 -10.06064 -9.75437 -9.27638 -9.04925 -9.02003 -8.93589 -8.37407 -8.23417 -7.92962 -6.02603 -4.04163 1.17255 1.25961 3.29490 3.37276 3.41656 3.54748 4.06989 4.44601 4.57196 4.61514 4.71377 4.84277 4.95484 5.00864 5.07549 5.16094 5.25139 5.29410 5.34016 5.36604 5.49673 5.55390 5.58513 5.63903 5.71282 5.72805 5.79851 5.86538 5.88648 5.92152 5.98367 6.01390 6.07415 6.14101 6.21636 6.30246 6.35326 6.37836 6.41400 6.45744 6.51356 6.54895 6.60037 6.83992 6.93062 7.06317 7.10273 7.12151 7.58825 7.61361 7.79947 7.92592 7.98730 8.41349 9.02683 9.60151 11.08519 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.003036 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.668317 B = 9219.497905 C =10592.714856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.039 0.961 4 C -0.116 4.116 5 C 0.022 3.978 6 C -0.517 4.517 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.285 1.285 14 N -0.680 5.680 15 C 0.095 3.905 16 H 0.080 0.920 17 C -0.108 4.108 18 C -0.114 4.114 19 C 0.050 3.950 20 N -0.526 5.526 21 C 0.089 3.911 22 C -0.075 4.075 23 C -0.114 4.114 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.122 4.122 27 C -0.100 4.100 28 C 0.028 3.972 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.014 0.986 35 H 0.011 0.989 36 H 0.259 0.741 37 H 0.351 0.649 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.030 0.970 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.124 0.876 51 H 0.038 0.962 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.215 8.988 -18.646 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.027 4.027 3 H 0.057 0.943 4 C -0.154 4.154 5 C -0.015 4.015 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.718 3.282 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 N -0.314 5.314 15 C -0.016 4.016 16 H 0.098 0.902 17 C -0.146 4.146 18 C -0.153 4.153 19 C -0.078 4.078 20 N -0.251 5.251 21 C -0.038 4.038 22 C -0.076 4.076 23 C -0.132 4.132 24 C -0.141 4.141 25 C -0.142 4.142 26 C -0.140 4.140 27 C -0.118 4.118 28 C -0.101 4.101 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.030 0.970 36 H 0.068 0.932 37 H 0.173 0.827 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.048 0.952 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.142 0.858 51 H 0.057 0.943 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.054 9.070 -18.774 21.711 hybrid contribution 2.110 -0.460 1.055 2.404 sum -3.943 8.609 -17.719 20.091 Atomic orbital electron populations 1.21790 0.95795 1.01546 1.00188 1.21609 0.94463 0.96188 0.90448 0.94294 1.21846 0.99631 0.99432 0.94475 1.19111 0.88802 0.96739 0.96823 1.21282 0.91928 1.34056 1.08314 0.92641 1.25018 0.97105 0.95628 0.96689 1.69965 1.02264 1.44268 1.37012 0.86559 0.78861 0.79487 0.83249 1.19727 1.21044 1.21073 1.60772 1.34996 1.30796 1.04790 1.21546 0.95468 0.93278 0.91314 0.90222 1.21557 1.02216 0.97548 0.93261 1.21568 0.97228 0.98409 0.98064 1.22234 0.96953 0.96176 0.92408 1.62090 1.35299 1.25289 1.02448 1.21121 0.91527 0.96498 0.94639 1.19821 0.97398 0.94815 0.95546 1.21119 0.98985 0.99826 0.93309 1.21103 1.00287 0.95271 0.97396 1.21130 0.98572 0.95599 0.98945 1.21151 0.99322 0.99945 0.93609 1.21070 0.98762 0.94359 0.97630 1.22931 0.98580 0.95055 0.93522 0.93630 0.92549 0.93196 0.92782 0.92524 0.96791 0.97036 0.93152 0.82748 0.92335 0.91379 0.91752 0.91369 0.90406 0.95206 0.89685 0.93650 0.86334 0.86226 0.86345 0.86178 0.85825 0.94332 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.43 37.16 0.35 -1.66 16 2 C 0.08 1.42 2.45 -67.71 -0.17 1.25 16 3 H 0.04 0.70 7.25 -51.93 -0.38 0.33 16 4 C -0.12 -2.37 4.74 -26.73 -0.13 -2.50 16 5 C 0.02 0.56 4.81 -27.88 -0.13 0.43 16 6 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 7 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 10 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 N -0.68 -11.27 6.07 -99.65 -0.61 -11.87 16 15 C 0.09 1.38 2.41 -67.63 -0.16 1.21 16 16 H 0.08 1.19 7.18 -51.93 -0.37 0.82 16 17 C -0.11 -1.38 5.61 -26.61 -0.15 -1.53 16 18 C -0.11 -1.29 6.09 -26.65 -0.16 -1.45 16 19 C 0.05 0.60 4.58 -3.83 -0.02 0.58 16 20 N -0.53 -6.98 4.80 -236.11 -1.13 -8.11 16 21 C 0.09 1.13 5.43 -4.97 -0.03 1.11 16 22 C -0.08 -0.86 4.11 -104.62 -0.43 -1.29 16 23 C -0.11 -1.20 7.82 -39.59 -0.31 -1.51 16 24 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 25 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 26 C -0.12 -1.13 10.05 -39.59 -0.40 -1.53 16 27 C -0.10 -1.05 9.70 -39.58 -0.38 -1.44 16 28 C 0.03 0.43 4.67 -3.83 -0.02 0.41 16 29 H 0.04 0.63 7.49 -51.93 -0.39 0.24 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.01 0.36 6.43 -51.93 -0.33 0.03 16 35 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.35 6.51 6.17 -39.29 -0.24 6.27 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.91 5.65 -51.93 -0.29 0.62 16 43 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 45 H 0.05 0.61 8.02 -51.93 -0.42 0.19 16 46 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 47 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 48 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 49 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 50 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 51 H 0.04 0.64 8.11 -51.93 -0.42 0.22 16 52 H 0.08 1.31 7.56 -51.93 -0.39 0.92 16 LS Contribution 401.29 15.07 6.05 6.05 Total: -1.00 -29.05 401.29 -12.86 -41.91 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -9.54 Total: 5.44 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -3.34 Total: -24.26 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -1.00 Total: -45.77 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.05 -12.86 -41.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481247.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.848 kcal (2) G-P(sol) polarization free energy of solvation -29.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds