Wall clock time and date at job start Tue Mar 31 2020 11:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47126 * 2 1 4 4 C 1.52995 * 109.47088 * 120.00137 * 2 1 3 5 5 C 1.53003 * 109.47245 * 185.00300 * 4 2 1 6 6 C 1.50699 * 109.47327 * 180.02562 * 5 4 2 7 7 H 1.07991 * 119.99985 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99995 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99925 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47209 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47178 * 120.00268 * 10 8 6 13 13 H 1.48506 * 109.46733 * 239.99717 * 10 8 6 14 14 N 1.46901 * 109.47004 * 240.00201 * 2 1 3 15 15 C 1.46898 * 110.99950 * 86.04043 * 14 2 1 16 16 H 1.09002 * 109.50499 * 326.70053 * 15 14 2 17 17 C 1.53118 * 109.53350 * 206.60276 * 15 14 2 18 18 C 1.53120 * 109.16132 * 182.38155 * 17 15 14 19 19 C 1.53041 * 109.27895 * 57.65603 * 18 17 15 20 20 N 1.46847 * 109.51969 * 300.82353 * 19 18 17 21 21 C 1.46907 * 110.99643 * 185.83665 * 20 19 18 22 22 C 1.50695 * 109.47253 * 45.78862 * 21 20 19 23 23 C 1.38233 * 120.00209 * 269.72541 * 22 21 20 24 24 C 1.38231 * 120.00293 * 179.76125 * 23 22 21 25 25 C 1.38241 * 119.99925 * 0.51252 * 24 23 22 26 26 C 1.38232 * 119.99771 * 359.74229 * 25 24 23 27 27 C 1.38233 * 120.00182 * 0.02562 * 26 25 24 28 28 C 1.46845 * 111.20428 * 61.74162 * 20 19 18 29 29 H 1.09004 * 109.46925 * 64.56387 * 1 2 3 30 30 H 1.09000 * 109.46897 * 184.56563 * 1 2 3 31 31 H 1.08995 * 109.46837 * 304.56537 * 1 2 3 32 32 H 1.09000 * 109.47190 * 304.99965 * 4 2 1 33 33 H 1.08994 * 109.47554 * 65.00099 * 4 2 1 34 34 H 1.09000 * 109.46752 * 299.99933 * 5 4 2 35 35 H 1.08997 * 109.47523 * 59.99500 * 5 4 2 36 36 H 0.97004 * 120.00136 * 180.02562 * 9 8 6 37 37 H 1.00899 * 110.99940 * 209.98900 * 14 2 1 38 38 H 1.08995 * 109.52323 * 302.28425 * 17 15 14 39 39 H 1.09002 * 109.52255 * 62.41741 * 17 15 14 40 40 H 1.08999 * 109.50878 * 177.59439 * 18 17 15 41 41 H 1.08999 * 109.50744 * 297.71979 * 18 17 15 42 42 H 1.08993 * 109.46381 * 180.80327 * 19 18 17 43 43 H 1.09002 * 109.46500 * 60.83396 * 19 18 17 44 44 H 1.09000 * 109.46844 * 165.78902 * 21 20 19 45 45 H 1.08997 * 109.47327 * 285.78769 * 21 20 19 46 46 H 1.08001 * 120.00018 * 0.02562 * 23 22 21 47 47 H 1.08005 * 120.00414 * 180.22583 * 24 23 22 48 48 H 1.07995 * 120.00168 * 179.71633 * 25 24 23 49 49 H 1.07997 * 120.00128 * 179.97438 * 26 25 24 50 50 H 1.08001 * 120.00264 * 179.97438 * 27 26 25 51 51 H 1.08998 * 109.46371 * 58.26707 * 28 20 19 52 52 H 1.08997 * 109.46328 * 178.25472 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3137 6 6 4.0673 -1.3242 2.5438 7 1 3.3689 -1.8046 3.2129 8 6 5.4186 -1.3613 2.8150 9 7 6.2692 -0.7767 2.0000 10 14 6.0414 -2.2432 4.3394 11 1 4.8914 -2.8145 5.0853 12 1 6.9632 -3.3357 3.9373 13 1 6.7647 -1.2798 5.2078 14 7 2.0197 -0.6925 -1.1995 15 6 2.1059 0.2285 -2.3407 16 1 1.3094 0.9694 -2.2714 17 6 1.9597 -0.5586 -3.6459 18 6 2.1102 0.4000 -4.8304 19 6 3.4676 1.1014 -4.7435 20 7 3.5578 1.8406 -3.4779 21 6 4.7902 2.6382 -3.4208 22 6 4.9764 3.3692 -4.7254 23 6 5.6873 2.7786 -5.7533 24 6 5.8538 3.4471 -6.9517 25 6 5.3185 4.7107 -7.1185 26 6 4.6121 5.3035 -6.0887 27 6 4.4414 4.6330 -4.8920 28 6 3.4634 0.9349 -2.3259 29 1 -0.3633 0.4414 -0.9281 30 1 -0.3633 -1.0244 0.0818 31 1 -0.3633 0.5830 0.8462 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.9995 -1.0727 0.4260 35 1 3.8533 0.4370 1.3573 36 1 7.2199 -0.8031 2.1905 37 1 2.9094 -1.1347 -1.0238 38 1 2.7327 -1.3253 -3.6974 39 1 0.9770 -1.0291 -3.6795 40 1 2.0497 -0.1613 -5.7628 41 1 1.3138 1.1436 -4.8003 42 1 3.5720 1.7952 -5.5776 43 1 4.2639 0.3583 -4.7876 44 1 4.7186 3.3597 -2.6070 45 1 5.6416 1.9796 -3.2487 46 1 6.1090 1.7931 -5.6217 47 1 6.4062 2.9842 -7.7562 48 1 5.4525 5.2349 -8.0532 49 1 4.1942 6.2908 -6.2188 50 1 3.8899 5.0962 -4.0873 51 1 4.2596 0.1925 -2.3813 52 1 3.5645 1.5078 -1.4042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172481247.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:00 Heat of formation + Delta-G solvation = -8.567801 kcal Electronic energy + Delta-G solvation = -26864.093329 eV Core-core repulsion = 23440.353838 eV Total energy + Delta-G solvation = -3423.739491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.96868 -39.75911 -38.01849 -35.55313 -34.69055 -32.85712 -32.00437 -31.79754 -31.01903 -28.66488 -27.36711 -26.99095 -24.08303 -23.84291 -23.40133 -22.99922 -21.70066 -21.19536 -20.58297 -18.51851 -17.70230 -17.23318 -16.83695 -16.55640 -16.37602 -16.28115 -15.83772 -15.37469 -15.07115 -14.98814 -14.81490 -14.37341 -14.35129 -14.24042 -14.07542 -13.69361 -13.53670 -13.36412 -13.15894 -13.10054 -13.03959 -12.88036 -12.60699 -12.38661 -12.32272 -12.00511 -11.92868 -11.88231 -11.69789 -11.67009 -11.44585 -11.36752 -11.22447 -10.93033 -10.56876 -9.80639 -9.77098 -9.39039 -9.25338 -8.22080 -6.32278 0.39227 0.50426 1.37125 1.37806 1.50893 2.38826 2.66538 3.05072 3.11182 3.32811 3.67375 3.82406 3.90678 3.96306 4.08606 4.10354 4.16246 4.24513 4.29266 4.32948 4.34168 4.35950 4.45574 4.57179 4.57854 4.65465 4.70851 4.77531 4.78149 4.79802 4.90360 4.93935 5.01317 5.05803 5.08539 5.09243 5.12606 5.16584 5.21460 5.33265 5.41249 5.45375 5.53730 5.55829 5.62371 5.69136 5.69936 5.82720 5.91200 6.04153 6.11278 6.24017 6.30458 6.43131 6.84232 7.36819 8.89119 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.003036 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.668317 B = 9219.497905 C =10592.714856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.088 3.912 3 H 0.027 0.973 4 C -0.103 4.103 5 C 0.032 3.968 6 C -0.541 4.541 7 H 0.058 0.942 8 C 0.001 3.999 9 N -0.930 5.930 10 Si 0.961 3.039 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.279 1.279 14 N -0.678 5.678 15 C 0.099 3.901 16 H 0.082 0.918 17 C -0.101 4.101 18 C -0.107 4.107 19 C 0.052 3.948 20 N -0.524 5.524 21 C 0.091 3.909 22 C -0.090 4.090 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.124 4.124 27 C -0.112 4.112 28 C 0.039 3.961 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.055 0.945 34 H -0.004 1.004 35 H -0.018 1.018 36 H 0.262 0.738 37 H 0.336 0.664 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.022 0.978 44 H 0.077 0.923 45 H 0.029 0.971 46 H 0.116 0.884 47 H 0.141 0.859 48 H 0.146 0.854 49 H 0.142 0.858 50 H 0.124 0.876 51 H 0.015 0.985 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.361 9.224 -20.046 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.022 4.022 3 H 0.045 0.955 4 C -0.141 4.141 5 C -0.005 4.005 6 C -0.579 4.579 7 H 0.076 0.924 8 C -0.197 4.197 9 N -0.571 5.571 10 Si 0.786 3.214 11 H -0.186 1.186 12 H -0.204 1.204 13 H -0.205 1.205 14 N -0.310 5.310 15 C -0.011 4.011 16 H 0.101 0.899 17 C -0.140 4.140 18 C -0.145 4.145 19 C -0.075 4.075 20 N -0.249 5.249 21 C -0.036 4.036 22 C -0.090 4.090 23 C -0.144 4.144 24 C -0.142 4.142 25 C -0.141 4.141 26 C -0.142 4.142 27 C -0.131 4.131 28 C -0.091 4.091 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.015 0.985 35 H 0.000 1.000 36 H 0.070 0.930 37 H 0.156 0.844 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.041 0.959 44 H 0.095 0.905 45 H 0.047 0.953 46 H 0.134 0.866 47 H 0.159 0.841 48 H 0.164 0.836 49 H 0.160 0.840 50 H 0.142 0.858 51 H 0.033 0.967 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.224 9.312 -20.184 23.372 hybrid contribution 2.518 -0.473 1.446 2.942 sum -4.706 8.839 -18.737 21.245 Atomic orbital electron populations 1.21703 0.93080 1.02108 1.01503 1.21539 0.96422 0.94923 0.89313 0.95525 1.21671 0.96184 0.99865 0.96412 1.18953 0.92051 0.94235 0.95273 1.21718 0.92496 1.34376 1.09282 0.92405 1.25934 0.97388 0.96359 0.99979 1.70097 1.02633 1.45432 1.38909 0.85449 0.78425 0.78289 0.79207 1.18648 1.20409 1.20486 1.60902 1.33921 1.31109 1.05058 1.21590 0.94738 0.93201 0.91585 0.89938 1.21513 1.02367 0.97433 0.92651 1.21558 0.96537 0.98195 0.98254 1.22275 0.97412 0.96098 0.91720 1.62116 1.35594 1.24782 1.02385 1.21066 0.90674 0.96093 0.95800 1.19707 0.98962 0.95411 0.94962 1.21189 0.99268 1.00063 0.93850 1.21389 1.00055 0.95534 0.97244 1.21498 0.97401 0.95358 0.99804 1.21443 0.98982 1.00770 0.92973 1.21188 0.99143 0.94195 0.98559 1.22729 0.98476 0.94422 0.93445 0.92209 0.92297 0.92031 0.92502 0.92588 0.98533 1.00003 0.92952 0.84417 0.93242 0.90436 0.89441 0.90917 0.89534 0.95946 0.90509 0.95300 0.86593 0.84123 0.83639 0.83972 0.85792 0.96668 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.43 71.98 0.68 -2.86 16 2 C 0.09 3.06 2.45 44.91 0.11 3.17 16 3 H 0.03 1.00 7.25 -2.39 -0.02 0.98 16 4 C -0.10 -4.31 4.74 30.59 0.14 -4.17 16 5 C 0.03 1.68 4.81 29.85 0.14 1.83 16 6 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 7 H 0.06 3.22 7.74 -2.92 -0.02 3.19 16 8 C 0.00 0.07 5.46 84.66 0.46 0.53 16 9 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 10 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 11 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 14 N -0.68 -22.99 6.07 -469.19 -2.85 -25.84 16 15 C 0.10 2.93 2.41 44.97 0.11 3.04 16 16 H 0.08 2.42 7.18 -2.39 -0.02 2.40 16 17 C -0.10 -2.52 5.61 30.67 0.17 -2.35 16 18 C -0.11 -2.25 6.09 30.65 0.19 -2.06 16 19 C 0.05 1.25 4.58 86.33 0.40 1.64 16 20 N -0.52 -14.50 4.80 -900.92 -4.32 -18.83 16 21 C 0.09 2.48 5.43 85.55 0.46 2.95 16 22 C -0.09 -2.08 4.11 -19.87 -0.08 -2.17 16 23 C -0.13 -2.60 7.82 22.27 0.17 -2.42 16 24 C -0.12 -2.08 10.05 22.27 0.22 -1.85 16 25 C -0.12 -1.85 10.05 22.27 0.22 -1.62 16 26 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 27 C -0.11 -2.32 9.70 22.27 0.22 -2.11 16 28 C 0.04 1.27 4.67 86.33 0.40 1.68 16 29 H 0.06 1.52 7.49 -2.38 -0.02 1.50 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.00 -0.20 6.43 -2.39 -0.02 -0.21 16 35 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 36 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.34 13.16 6.17 -89.69 -0.55 12.61 16 38 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.09 1.95 5.65 -2.39 -0.01 1.94 16 43 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 45 H 0.03 0.86 8.02 -2.39 -0.02 0.84 16 46 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 47 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 48 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 49 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 50 H 0.12 2.46 8.06 -2.91 -0.02 2.43 16 51 H 0.02 0.55 8.11 -2.39 -0.02 0.53 16 52 H 0.05 1.90 7.56 -2.39 -0.02 1.88 16 Total: -1.00 -63.74 401.29 -0.07 -63.81 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.31 Total: 29.92 kcal Atomic # 6 Polarization: -43.91 SS G_CDS: 4.48 Total: -39.42 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -6.89 Total: -101.14 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -63.74 -0.07 -63.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481247.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.246 kcal (2) G-P(sol) polarization free energy of solvation -63.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds