Wall clock time and date at job start Tue Mar 31 2020 11:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46956 * 239.99823 * 2 1 3 5 5 C 1.53002 * 109.47374 * 174.99955 * 4 2 1 6 6 C 1.50694 * 109.47308 * 180.02562 * 5 4 2 7 7 H 1.08003 * 120.00462 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00257 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99707 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00378 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46978 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46885 * 120.00307 * 10 8 6 13 13 H 1.48499 * 109.47139 * 240.00320 * 10 8 6 14 14 N 1.46898 * 109.47158 * 120.00236 * 2 1 3 15 15 C 1.46900 * 110.99798 * 274.99390 * 14 2 1 16 16 H 1.09011 * 109.53625 * 34.90530 * 15 14 2 17 17 C 1.53123 * 109.50895 * 274.80768 * 15 14 2 18 18 C 1.53114 * 109.16198 * 182.40522 * 17 15 14 19 19 C 1.53032 * 109.28141 * 57.65126 * 18 17 15 20 20 N 1.46844 * 109.52527 * 300.82107 * 19 18 17 21 21 C 1.46904 * 111.00328 * 185.83771 * 20 19 18 22 22 C 1.50699 * 109.46896 * 45.78858 * 21 20 19 23 23 C 1.38236 * 119.99858 * 269.72625 * 22 21 20 24 24 C 1.38237 * 119.99418 * 179.76410 * 23 22 21 25 25 C 1.38237 * 120.00528 * 0.51431 * 24 23 22 26 26 C 1.38241 * 119.99351 * 359.73819 * 25 24 23 27 27 C 1.38230 * 119.99910 * 90.00442 * 22 21 20 28 28 C 1.46846 * 111.19783 * 61.73901 * 20 19 18 29 29 H 1.09004 * 109.46627 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46941 * 299.99993 * 1 2 3 31 31 H 1.08997 * 109.47220 * 59.99891 * 1 2 3 32 32 H 1.09004 * 109.47607 * 294.99891 * 4 2 1 33 33 H 1.09007 * 109.47273 * 55.00180 * 4 2 1 34 34 H 1.08998 * 109.46773 * 300.00039 * 5 4 2 35 35 H 1.08999 * 109.46977 * 59.99676 * 5 4 2 36 36 H 0.97004 * 120.00275 * 179.97438 * 9 8 6 37 37 H 1.00900 * 111.00353 * 151.04990 * 14 2 1 38 38 H 1.09000 * 109.52219 * 62.49692 * 17 15 14 39 39 H 1.09001 * 109.57074 * 302.34468 * 17 15 14 40 40 H 1.09000 * 109.50493 * 297.71120 * 18 17 15 41 41 H 1.08996 * 109.50191 * 177.59676 * 18 17 15 42 42 H 1.09000 * 109.46311 * 180.80335 * 19 18 17 43 43 H 1.09008 * 109.45233 * 60.83074 * 19 18 17 44 44 H 1.09003 * 109.47099 * 165.79287 * 21 20 19 45 45 H 1.09003 * 109.46551 * 285.79090 * 21 20 19 46 46 H 1.07995 * 120.00336 * 0.02562 * 23 22 21 47 47 H 1.08006 * 119.99555 * 180.23178 * 24 23 22 48 48 H 1.07993 * 120.00483 * 179.71903 * 25 24 23 49 49 H 1.07997 * 119.99362 * 179.97438 * 26 25 24 50 50 H 1.08005 * 119.99981 * 359.97438 * 27 22 21 51 51 H 1.09008 * 109.46456 * 58.27625 * 28 20 19 52 52 H 1.09003 * 109.46474 * 178.24130 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3138 6 6 4.0670 -1.3233 -2.5445 7 1 3.3686 -1.8038 -3.2136 8 6 5.4182 -1.3594 -2.8165 9 7 6.2688 -0.7747 -2.0015 10 14 6.0409 -2.2400 -4.3417 11 1 4.8909 -2.8115 -5.0874 12 1 6.7631 -1.2756 -5.2098 13 1 6.9635 -3.3323 -3.9407 14 7 2.0197 -0.6925 1.1994 15 6 2.0826 0.2226 2.3468 16 1 1.2591 0.9346 2.2908 17 6 3.4142 0.9784 2.3257 18 6 3.4970 1.8850 3.5568 19 6 3.3506 1.0351 4.8210 20 7 2.0612 0.3331 4.7938 21 6 1.8252 -0.3836 6.0543 22 6 2.1581 0.5183 7.2148 23 6 3.4384 0.5300 7.7360 24 6 3.7449 1.3609 8.7974 25 6 2.7685 2.1723 9.3445 26 6 1.4868 2.1566 8.8266 27 6 1.1817 1.3295 7.7619 28 6 1.9772 -0.5791 3.6461 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7517 -1.7716 -1.2056 33 1 1.6054 -0.2618 -2.1370 34 1 3.8532 0.4369 -1.3575 35 1 3.9995 -1.0728 -0.4260 36 1 7.2195 -0.8004 -2.1926 37 1 2.9174 -1.1205 1.0287 38 1 3.4745 1.5848 1.4220 39 1 4.2388 0.2658 2.3419 40 1 2.6958 2.6231 3.5198 41 1 4.4609 2.3937 3.5698 42 1 3.3949 1.6795 5.6990 43 1 4.1601 0.3063 4.8642 44 1 0.7779 -0.6800 6.1131 45 1 2.4567 -1.2713 6.0911 46 1 4.2002 -0.1068 7.3112 47 1 4.7462 1.3729 9.2021 48 1 3.0068 2.8180 10.1766 49 1 0.7239 2.7901 9.2544 50 1 0.1803 1.3173 7.3573 51 1 2.7931 -1.3003 3.6950 52 1 1.0240 -1.1071 3.6708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172481248.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:04 Heat of formation + Delta-G solvation = 7.256853 kcal Electronic energy + Delta-G solvation = -26595.105749 eV Core-core repulsion = 23172.052467 eV Total energy + Delta-G solvation = -3423.053283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.05121 -38.76793 -36.75945 -34.09654 -32.93870 -31.47184 -31.13004 -31.08279 -29.32178 -27.51056 -26.43827 -25.04361 -23.09630 -22.87667 -22.33285 -21.41577 -20.79611 -19.79191 -19.32999 -16.97425 -16.38995 -16.16670 -15.62731 -15.50968 -15.21534 -14.70418 -14.53159 -14.39833 -14.07924 -13.87208 -13.60795 -13.29821 -13.02406 -12.83867 -12.72669 -12.59979 -12.48211 -12.14269 -12.03222 -11.77892 -11.43316 -11.25723 -11.23951 -11.19537 -10.98116 -10.95699 -10.68253 -10.51940 -10.41781 -10.35266 -10.12693 -9.73065 -9.25895 -9.11799 -9.01268 -9.00028 -8.36440 -8.30557 -7.89396 -6.01320 -4.03024 1.09502 1.18827 3.30168 3.37846 3.42253 3.46157 3.96391 4.45434 4.48821 4.62375 4.73412 4.78199 4.89918 4.95584 5.02149 5.11446 5.17184 5.27568 5.34358 5.37189 5.46177 5.47219 5.55069 5.59728 5.69704 5.74873 5.78406 5.80349 5.82208 5.86873 5.97305 6.01504 6.04334 6.16100 6.21694 6.23728 6.28852 6.38601 6.40554 6.42238 6.51165 6.56032 6.60783 6.76711 6.94075 7.03579 7.06647 7.11567 7.58063 7.63137 7.81427 7.94021 8.00336 8.42590 9.03997 9.61192 11.09814 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020845 B = 0.002457 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.915501 B =11391.140419 C =12227.962631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.085 3.915 3 H 0.038 0.962 4 C -0.115 4.115 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 N -0.684 5.684 15 C 0.095 3.905 16 H 0.080 0.920 17 C -0.152 4.152 18 C -0.111 4.111 19 C 0.052 3.948 20 N -0.531 5.531 21 C 0.093 3.907 22 C -0.079 4.079 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.100 4.100 28 C 0.070 3.930 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.011 0.989 35 H 0.015 0.985 36 H 0.259 0.741 37 H 0.352 0.648 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.030 0.970 44 H 0.084 0.916 45 H 0.042 0.958 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.124 0.876 51 H 0.034 0.966 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.925 5.304 21.962 24.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.024 4.024 3 H 0.056 0.944 4 C -0.153 4.153 5 C -0.015 4.015 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 N -0.317 5.317 15 C -0.015 4.015 16 H 0.098 0.902 17 C -0.191 4.191 18 C -0.149 4.149 19 C -0.076 4.076 20 N -0.256 5.256 21 C -0.034 4.034 22 C -0.079 4.079 23 C -0.132 4.132 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.118 4.118 28 C -0.058 4.058 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.174 0.826 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.049 0.951 44 H 0.102 0.898 45 H 0.060 0.940 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.142 0.858 51 H 0.052 0.948 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.735 5.401 22.059 24.709 hybrid contribution 2.044 -0.474 -0.967 2.310 sum -7.691 4.927 21.091 22.984 Atomic orbital electron populations 1.21803 0.95822 1.01628 1.00161 1.21563 0.94355 0.96152 0.90350 0.94395 1.21836 0.99655 0.99431 0.94397 1.19112 0.88793 0.96779 0.96820 1.21288 0.91936 1.34092 1.08285 0.92646 1.25024 0.97114 0.95643 0.96696 1.69968 1.02275 1.44252 1.37006 0.86557 0.78855 0.79477 0.83255 1.19732 1.21081 1.21042 1.60571 1.34631 1.32172 1.04363 1.21475 0.96564 0.93228 0.90277 0.90197 1.22337 0.98843 0.99596 0.98306 1.21506 1.01618 0.97991 0.93824 1.22227 0.89357 0.97090 0.98917 1.62013 1.32684 1.29363 1.01552 1.21072 1.01760 0.93650 0.86894 1.19799 0.93708 0.97874 0.96510 1.21119 0.96081 0.99348 0.96659 1.21120 0.99363 0.96775 0.96749 1.21149 0.93500 0.99344 1.00131 1.21160 0.96727 0.99215 0.96931 1.21049 0.99386 0.95595 0.95778 1.22026 1.01418 0.93310 0.89095 0.92465 0.93705 0.93136 0.92529 0.92803 0.97020 0.96716 0.93139 0.82645 0.91457 0.91796 0.91438 0.91747 0.90401 0.95133 0.89796 0.93953 0.86325 0.86175 0.86299 0.86157 0.85843 0.94806 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.40 37.16 0.35 -1.67 16 2 C 0.09 1.48 2.46 -67.71 -0.17 1.31 16 3 H 0.04 0.69 7.15 -51.93 -0.37 0.32 16 4 C -0.12 -2.37 4.74 -26.73 -0.13 -2.50 16 5 C 0.02 0.56 4.80 -27.88 -0.13 0.42 16 6 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 7 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 10 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 N -0.68 -11.33 6.06 -99.65 -0.60 -11.93 16 15 C 0.10 1.38 2.44 -67.63 -0.16 1.22 16 16 H 0.08 1.19 7.12 -51.92 -0.37 0.82 16 17 C -0.15 -2.27 5.24 -26.61 -0.14 -2.41 16 18 C -0.11 -1.41 6.09 -26.66 -0.16 -1.57 16 19 C 0.05 0.62 4.58 -3.84 -0.02 0.60 16 20 N -0.53 -6.26 4.80 -236.11 -1.13 -7.39 16 21 C 0.09 0.95 5.43 -4.97 -0.03 0.92 16 22 C -0.08 -0.77 4.11 -104.63 -0.43 -1.20 16 23 C -0.11 -1.06 7.82 -39.58 -0.31 -1.37 16 24 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 25 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 26 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 27 C -0.10 -0.91 9.70 -39.59 -0.38 -1.30 16 28 C 0.07 0.90 5.03 -3.84 -0.02 0.89 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.62 7.43 -51.93 -0.39 0.23 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.01 0.39 6.43 -51.93 -0.33 0.05 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.35 6.55 6.19 -39.29 -0.24 6.30 16 38 H 0.07 1.11 7.48 -51.93 -0.39 0.73 16 39 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.90 5.65 -51.93 -0.29 0.61 16 43 H 0.03 0.38 8.14 -51.92 -0.42 -0.05 16 44 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 45 H 0.04 0.43 8.02 -51.93 -0.42 0.01 16 46 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 47 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 48 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 49 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 50 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 51 H 0.03 0.47 8.14 -51.92 -0.42 0.04 16 52 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 LS Contribution 400.96 15.07 6.04 6.04 Total: -1.00 -29.28 400.96 -12.84 -42.12 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -9.52 Total: 4.73 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -3.34 Total: -24.30 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: -1.00 Total: -45.29 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.28 -12.84 -42.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481248.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.379 kcal (2) G-P(sol) polarization free energy of solvation -29.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds