Wall clock time and date at job start Tue Mar 31 2020 11:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46956 * 239.99823 * 2 1 3 5 5 C 1.53002 * 109.47374 * 174.99955 * 4 2 1 6 6 C 1.50694 * 109.47308 * 180.02562 * 5 4 2 7 7 H 1.08003 * 120.00462 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00257 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99707 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00378 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46978 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46885 * 120.00307 * 10 8 6 13 13 H 1.48499 * 109.47139 * 240.00320 * 10 8 6 14 14 N 1.46898 * 109.47158 * 120.00236 * 2 1 3 15 15 C 1.46900 * 110.99798 * 274.99390 * 14 2 1 16 16 H 1.09011 * 109.53625 * 34.90530 * 15 14 2 17 17 C 1.53123 * 109.50895 * 274.80768 * 15 14 2 18 18 C 1.53114 * 109.16198 * 182.40522 * 17 15 14 19 19 C 1.53032 * 109.28141 * 57.65126 * 18 17 15 20 20 N 1.46844 * 109.52527 * 300.82107 * 19 18 17 21 21 C 1.46904 * 111.00328 * 185.83771 * 20 19 18 22 22 C 1.50699 * 109.46896 * 45.78858 * 21 20 19 23 23 C 1.38236 * 119.99858 * 269.72625 * 22 21 20 24 24 C 1.38237 * 119.99418 * 179.76410 * 23 22 21 25 25 C 1.38237 * 120.00528 * 0.51431 * 24 23 22 26 26 C 1.38241 * 119.99351 * 359.73819 * 25 24 23 27 27 C 1.38230 * 119.99910 * 90.00442 * 22 21 20 28 28 C 1.46846 * 111.19783 * 61.73901 * 20 19 18 29 29 H 1.09004 * 109.46627 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46941 * 299.99993 * 1 2 3 31 31 H 1.08997 * 109.47220 * 59.99891 * 1 2 3 32 32 H 1.09004 * 109.47607 * 294.99891 * 4 2 1 33 33 H 1.09007 * 109.47273 * 55.00180 * 4 2 1 34 34 H 1.08998 * 109.46773 * 300.00039 * 5 4 2 35 35 H 1.08999 * 109.46977 * 59.99676 * 5 4 2 36 36 H 0.97004 * 120.00275 * 179.97438 * 9 8 6 37 37 H 1.00900 * 111.00353 * 151.04990 * 14 2 1 38 38 H 1.09000 * 109.52219 * 62.49692 * 17 15 14 39 39 H 1.09001 * 109.57074 * 302.34468 * 17 15 14 40 40 H 1.09000 * 109.50493 * 297.71120 * 18 17 15 41 41 H 1.08996 * 109.50191 * 177.59676 * 18 17 15 42 42 H 1.09000 * 109.46311 * 180.80335 * 19 18 17 43 43 H 1.09008 * 109.45233 * 60.83074 * 19 18 17 44 44 H 1.09003 * 109.47099 * 165.79287 * 21 20 19 45 45 H 1.09003 * 109.46551 * 285.79090 * 21 20 19 46 46 H 1.07995 * 120.00336 * 0.02562 * 23 22 21 47 47 H 1.08006 * 119.99555 * 180.23178 * 24 23 22 48 48 H 1.07993 * 120.00483 * 179.71903 * 25 24 23 49 49 H 1.07997 * 119.99362 * 179.97438 * 26 25 24 50 50 H 1.08005 * 119.99981 * 359.97438 * 27 22 21 51 51 H 1.09008 * 109.46456 * 58.27625 * 28 20 19 52 52 H 1.09003 * 109.46474 * 178.24130 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3138 6 6 4.0670 -1.3233 -2.5445 7 1 3.3686 -1.8038 -3.2136 8 6 5.4182 -1.3594 -2.8165 9 7 6.2688 -0.7747 -2.0015 10 14 6.0409 -2.2400 -4.3417 11 1 4.8909 -2.8115 -5.0874 12 1 6.7631 -1.2756 -5.2098 13 1 6.9635 -3.3323 -3.9407 14 7 2.0197 -0.6925 1.1994 15 6 2.0826 0.2226 2.3468 16 1 1.2591 0.9346 2.2908 17 6 3.4142 0.9784 2.3257 18 6 3.4970 1.8850 3.5568 19 6 3.3506 1.0351 4.8210 20 7 2.0612 0.3331 4.7938 21 6 1.8252 -0.3836 6.0543 22 6 2.1581 0.5183 7.2148 23 6 3.4384 0.5300 7.7360 24 6 3.7449 1.3609 8.7974 25 6 2.7685 2.1723 9.3445 26 6 1.4868 2.1566 8.8266 27 6 1.1817 1.3295 7.7619 28 6 1.9772 -0.5791 3.6461 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7517 -1.7716 -1.2056 33 1 1.6054 -0.2618 -2.1370 34 1 3.8532 0.4369 -1.3575 35 1 3.9995 -1.0728 -0.4260 36 1 7.2195 -0.8004 -2.1926 37 1 2.9174 -1.1205 1.0287 38 1 3.4745 1.5848 1.4220 39 1 4.2388 0.2658 2.3419 40 1 2.6958 2.6231 3.5198 41 1 4.4609 2.3937 3.5698 42 1 3.3949 1.6795 5.6990 43 1 4.1601 0.3063 4.8642 44 1 0.7779 -0.6800 6.1131 45 1 2.4567 -1.2713 6.0911 46 1 4.2002 -0.1068 7.3112 47 1 4.7462 1.3729 9.2021 48 1 3.0068 2.8180 10.1766 49 1 0.7239 2.7901 9.2544 50 1 0.1803 1.3173 7.3573 51 1 2.7931 -1.3003 3.6950 52 1 1.0240 -1.1071 3.6708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172481248.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:03 Heat of formation + Delta-G solvation = -8.302629 kcal Electronic energy + Delta-G solvation = -26595.780459 eV Core-core repulsion = 23172.052467 eV Total energy + Delta-G solvation = -3423.727992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.91919 -39.74327 -38.04576 -35.54391 -34.61976 -32.84471 -31.99651 -31.75861 -31.00357 -28.69606 -27.32604 -26.97627 -24.09018 -23.77135 -23.37331 -22.97648 -21.69613 -21.13244 -20.65444 -18.50766 -17.66203 -17.20969 -16.73173 -16.56106 -16.31264 -16.25660 -15.84449 -15.36023 -15.26938 -14.91231 -14.54689 -14.47282 -14.28887 -14.18321 -14.18107 -13.68613 -13.45005 -13.37842 -13.20683 -13.10872 -12.95355 -12.87373 -12.57312 -12.42013 -12.19459 -11.97176 -11.92565 -11.89688 -11.75698 -11.73766 -11.47714 -11.35056 -11.25113 -10.92477 -10.55931 -9.76894 -9.71273 -9.32979 -9.18521 -8.21170 -6.31434 0.42947 0.54010 1.37893 1.38477 1.51611 2.39590 2.66262 3.06246 3.12109 3.45019 3.79360 3.82939 3.84098 3.99336 4.01589 4.14118 4.19054 4.24143 4.31000 4.37782 4.40700 4.46399 4.49998 4.56635 4.62778 4.66052 4.70635 4.72312 4.78596 4.83841 4.87344 4.95895 5.02475 5.04135 5.06277 5.09799 5.13612 5.20010 5.21631 5.25865 5.32219 5.46001 5.54393 5.59138 5.66096 5.71029 5.73137 5.84069 6.04244 6.07938 6.15850 6.24842 6.30078 6.45230 6.85338 7.37610 8.90158 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020845 B = 0.002457 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.915501 B =11391.140419 C =12227.962631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.091 3.909 3 H 0.027 0.973 4 C -0.103 4.103 5 C 0.031 3.969 6 C -0.541 4.541 7 H 0.058 0.942 8 C 0.000 4.000 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.278 1.278 14 N -0.682 5.682 15 C 0.100 3.900 16 H 0.083 0.917 17 C -0.147 4.147 18 C -0.105 4.105 19 C 0.059 3.941 20 N -0.531 5.531 21 C 0.095 3.905 22 C -0.091 4.091 23 C -0.126 4.126 24 C -0.130 4.130 25 C -0.126 4.126 26 C -0.127 4.127 27 C -0.109 4.109 28 C 0.079 3.921 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.056 0.944 34 H -0.018 1.018 35 H -0.002 1.002 36 H 0.262 0.738 37 H 0.337 0.663 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.023 0.977 44 H 0.093 0.907 45 H 0.040 0.960 46 H 0.117 0.883 47 H 0.135 0.865 48 H 0.140 0.860 49 H 0.140 0.860 50 H 0.130 0.870 51 H 0.022 0.978 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.107 5.444 22.782 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.019 4.019 3 H 0.045 0.955 4 C -0.141 4.141 5 C -0.006 4.006 6 C -0.579 4.579 7 H 0.076 0.924 8 C -0.197 4.197 9 N -0.571 5.571 10 Si 0.787 3.213 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.204 1.204 14 N -0.314 5.314 15 C -0.010 4.010 16 H 0.101 0.899 17 C -0.186 4.186 18 C -0.144 4.144 19 C -0.069 4.069 20 N -0.256 5.256 21 C -0.031 4.031 22 C -0.092 4.092 23 C -0.144 4.144 24 C -0.147 4.147 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.128 4.128 28 C -0.050 4.050 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.000 1.000 35 H 0.016 0.984 36 H 0.071 0.929 37 H 0.157 0.843 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.042 0.958 44 H 0.112 0.888 45 H 0.058 0.942 46 H 0.135 0.865 47 H 0.153 0.847 48 H 0.158 0.842 49 H 0.158 0.842 50 H 0.148 0.852 51 H 0.041 0.959 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.941 5.546 22.890 25.970 hybrid contribution 2.436 -0.478 -1.165 2.742 sum -8.506 5.068 21.725 23.875 Atomic orbital electron populations 1.21714 0.93120 1.02188 1.01451 1.21491 0.96309 0.94915 0.89194 0.95542 1.21662 0.96187 0.99876 0.96360 1.18960 0.92070 0.94279 0.95289 1.21726 0.92510 1.34408 1.09259 0.92409 1.25943 0.97397 0.96373 1.00011 1.70097 1.02664 1.45432 1.38919 0.85442 0.78415 0.78282 0.79182 1.18668 1.20479 1.20398 1.60676 1.33547 1.32516 1.04662 1.21485 0.96124 0.93065 0.90323 0.89868 1.22254 0.98516 0.99284 0.98560 1.21472 1.02149 0.97706 0.93040 1.22147 0.89315 0.96887 0.98523 1.62020 1.32381 1.29236 1.01926 1.21093 1.02282 0.93565 0.86198 1.19803 0.94189 0.98461 0.96719 1.21221 0.96058 0.99869 0.97282 1.21375 1.00377 0.96521 0.96469 1.21469 0.93300 0.99204 1.00472 1.21451 0.97422 0.99074 0.96546 1.21223 0.99616 0.95722 0.96210 1.21882 1.01323 0.92973 0.88790 0.92221 0.92276 0.92015 0.92603 0.92513 0.99975 0.98425 0.92911 0.84313 0.93687 0.93855 0.90936 0.91225 0.89570 0.95834 0.88832 0.94175 0.86463 0.84686 0.84197 0.84202 0.85158 0.95949 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.40 71.98 0.68 -2.87 16 2 C 0.09 3.14 2.46 44.92 0.11 3.25 16 3 H 0.03 0.98 7.15 -2.39 -0.02 0.96 16 4 C -0.10 -4.28 4.74 30.59 0.15 -4.14 16 5 C 0.03 1.64 4.80 29.85 0.14 1.78 16 6 C -0.54 -31.05 9.11 25.60 0.23 -30.82 16 7 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 8 C 0.00 0.03 5.46 84.66 0.46 0.49 16 9 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 10 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 11 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 N -0.68 -22.95 6.06 -469.19 -2.84 -25.79 16 15 C 0.10 2.93 2.44 44.97 0.11 3.04 16 16 H 0.08 2.41 7.12 -2.38 -0.02 2.39 16 17 C -0.15 -4.58 5.24 30.67 0.16 -4.42 16 18 C -0.11 -2.68 6.09 30.64 0.19 -2.49 16 19 C 0.06 1.38 4.58 86.32 0.40 1.78 16 20 N -0.53 -12.10 4.80 -900.91 -4.32 -16.42 16 21 C 0.10 1.85 5.43 85.56 0.46 2.31 16 22 C -0.09 -1.69 4.11 -19.87 -0.08 -1.77 16 23 C -0.13 -2.25 7.82 22.27 0.17 -2.07 16 24 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 25 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 26 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 27 C -0.11 -1.83 9.70 22.27 0.22 -1.61 16 28 C 0.08 2.02 5.03 86.33 0.43 2.45 16 29 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.06 1.49 7.43 -2.39 -0.02 1.47 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 34 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 35 H 0.00 -0.14 6.43 -2.39 -0.02 -0.15 16 36 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 37 H 0.34 13.12 6.19 -89.69 -0.55 12.57 16 38 H 0.04 1.58 7.48 -2.39 -0.02 1.56 16 39 H 0.04 1.51 8.10 -2.39 -0.02 1.49 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.09 1.92 5.65 -2.39 -0.01 1.90 16 43 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 44 H 0.09 1.62 8.09 -2.39 -0.02 1.60 16 45 H 0.04 0.79 8.02 -2.39 -0.02 0.78 16 46 H 0.12 2.04 8.06 -2.91 -0.02 2.02 16 47 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 48 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 49 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 50 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 51 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 52 H 0.09 2.12 8.12 -2.39 -0.02 2.10 16 Total: -1.00 -63.15 400.96 -0.05 -63.20 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.31 Total: 28.75 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 4.50 Total: -40.02 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -6.88 Total: -98.70 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -63.15 -0.05 -63.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481248.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.900 kcal (2) G-P(sol) polarization free energy of solvation -63.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds