Wall clock time and date at job start Tue Mar 31 2020 11:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47192 * 2 1 4 4 C 1.53000 * 109.46778 * 240.00036 * 2 1 3 5 5 C 1.53005 * 109.46426 * 176.46329 * 4 2 1 6 6 C 1.50703 * 109.47049 * 183.82493 * 5 4 2 7 7 H 1.08000 * 119.99840 * 5.00033 * 6 5 4 8 8 C 1.37872 * 120.00538 * 185.00188 * 6 5 4 9 9 N 1.31515 * 120.00588 * 184.89855 * 8 6 5 10 10 Si 1.86806 * 119.99628 * 4.89944 * 8 6 5 11 11 H 1.48501 * 109.47252 * 94.10015 * 10 8 6 12 12 H 1.48504 * 109.47194 * 214.10400 * 10 8 6 13 13 H 1.48502 * 109.47169 * 334.10164 * 10 8 6 14 14 N 1.46900 * 109.46650 * 120.00281 * 2 1 3 15 15 C 1.46896 * 110.99999 * 58.68837 * 14 2 1 16 16 C 1.50705 * 109.46917 * 181.15127 * 15 14 2 17 17 C 1.38130 * 120.03205 * 255.02351 * 16 15 14 18 18 C 1.38264 * 120.07255 * 179.97438 * 17 16 15 19 19 C 1.38316 * 120.14800 * 359.97438 * 18 17 16 20 20 C 1.38079 * 120.07593 * 359.97438 * 19 18 17 21 21 C 1.38885 * 120.04038 * 74.74964 * 16 15 14 22 22 N 1.39672 * 120.07422 * 0.02562 * 21 16 15 23 23 C 1.46850 * 110.99622 * 244.86984 * 22 21 16 24 24 C 1.53047 * 109.51971 * 174.16098 * 23 22 21 25 25 C 1.53114 * 109.27645 * 59.17950 * 24 23 22 26 26 C 1.53109 * 109.16402 * 302.34265 * 25 24 23 27 27 C 1.46839 * 111.00166 * 120.66157 * 22 21 16 28 28 H 1.08991 * 109.47133 * 300.00068 * 1 2 3 29 29 H 1.09008 * 109.46486 * 59.99930 * 1 2 3 30 30 H 1.09000 * 109.46974 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47572 * 296.46007 * 4 2 1 32 32 H 1.09001 * 109.47386 * 56.46959 * 4 2 1 33 33 H 1.08999 * 109.47476 * 303.81898 * 5 4 2 34 34 H 1.08999 * 109.47627 * 63.82803 * 5 4 2 35 35 H 0.96998 * 120.00314 * 179.97438 * 9 8 6 36 36 H 1.00903 * 110.99930 * 182.64015 * 14 2 1 37 37 H 1.09006 * 109.47188 * 301.14314 * 15 14 2 38 38 H 1.08993 * 109.47987 * 61.14857 * 15 14 2 39 39 H 1.07994 * 119.96445 * 359.97313 * 17 16 15 40 40 H 1.07999 * 119.92699 * 179.97438 * 18 17 16 41 41 H 1.08005 * 119.95837 * 180.02562 * 19 18 17 42 42 H 1.08003 * 120.03533 * 180.02562 * 20 19 18 43 43 H 1.09001 * 109.46646 * 294.17158 * 23 22 21 44 44 H 1.09002 * 109.46424 * 54.14712 * 23 22 21 45 45 H 1.09002 * 109.50115 * 299.23562 * 24 23 22 46 46 H 1.09000 * 109.53416 * 179.14064 * 24 23 22 47 47 H 1.09000 * 109.51849 * 182.43710 * 25 24 23 48 48 H 1.08999 * 109.57719 * 62.28311 * 25 24 23 49 49 H 1.08998 * 109.50513 * 297.71835 * 26 25 24 50 50 H 1.08999 * 109.54217 * 177.61461 * 26 25 24 51 51 H 1.09002 * 109.46461 * 305.85524 * 27 22 21 52 52 H 1.09005 * 109.46378 * 65.83611 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5674 -0.6446 -1.2945 6 6 4.0643 -1.2724 -2.5712 7 1 3.3596 -1.6118 -3.3160 8 6 5.4185 -1.4135 -2.7886 9 7 5.8552 -1.8721 -3.9413 10 14 6.6329 -0.9535 -1.4458 11 1 6.9746 -2.1614 -0.6524 12 1 7.8659 -0.4006 -2.0617 13 1 6.0236 0.0672 -0.5558 14 7 2.0196 -0.6926 1.1994 15 6 1.5231 -2.0742 1.2491 16 6 2.0217 -2.7423 2.5045 17 6 3.0452 -3.6674 2.4355 18 6 3.5037 -4.2805 3.5869 19 6 2.9400 -3.9697 4.8111 20 6 1.9173 -3.0451 4.8873 21 6 1.4566 -2.4245 3.7327 22 7 0.4251 -1.4857 3.8067 23 6 0.8469 -0.2988 4.5615 24 6 -0.2520 0.7646 4.4984 25 6 -1.5433 0.1927 5.0900 26 6 -1.9344 -1.0697 4.3169 27 6 -0.7867 -2.0798 4.3852 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7294 -1.7656 -1.2182 32 1 1.6259 -0.2453 -2.1381 33 1 3.8802 0.3989 -1.2571 34 1 3.9836 -1.1794 -0.4408 35 1 6.8080 -1.9710 -4.0943 36 1 3.0273 -0.6687 1.2448 37 1 0.4330 -2.0688 1.2488 38 1 1.8839 -2.6216 0.3783 39 1 3.4877 -3.9121 1.4813 40 1 4.3037 -5.0038 3.5302 41 1 3.3008 -4.4502 5.7086 42 1 1.4779 -2.8025 5.8436 43 1 1.0266 -0.5741 5.6007 44 1 1.7639 0.1004 4.1279 45 1 -0.4225 1.0505 3.4605 46 1 0.0544 1.6398 5.0713 47 1 -2.3401 0.9318 5.0077 48 1 -1.3851 -0.0570 6.1392 49 1 -2.1314 -0.8126 3.2762 50 1 -2.8297 -1.5057 4.7599 51 1 -1.0564 -2.9744 3.8236 52 1 -0.5995 -2.3467 5.4253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172482835.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:15 Heat of formation + Delta-G solvation = 13.797161 kcal Electronic energy + Delta-G solvation = -27828.615712 eV Core-core repulsion = 24405.846038 eV Total energy + Delta-G solvation = -3422.769674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.32557 -38.08894 -37.27142 -33.75121 -33.23715 -32.17812 -30.90735 -30.25591 -29.33393 -28.65102 -25.53351 -24.86153 -24.32013 -23.12027 -22.03245 -21.09185 -20.81183 -19.62553 -18.97979 -17.27403 -16.75398 -16.21966 -15.56492 -15.14325 -15.05796 -14.62461 -14.40179 -14.17692 -14.09914 -13.83528 -13.58016 -13.51400 -13.10954 -12.95448 -12.68398 -12.54811 -12.42456 -12.12678 -12.03472 -11.76016 -11.56385 -11.35009 -11.31737 -11.23918 -10.99517 -10.84274 -10.77373 -10.55938 -10.41400 -10.33148 -9.83123 -9.81317 -9.50995 -9.20148 -8.77524 -8.50655 -8.49122 -8.34473 -7.76273 -6.04275 -4.01500 1.36754 1.43365 3.29621 3.38224 3.42204 3.75654 3.81410 4.45260 4.68383 4.76131 4.77914 4.82020 4.94233 4.97948 5.14694 5.17881 5.28642 5.29950 5.38133 5.42432 5.43848 5.47952 5.52688 5.65313 5.68830 5.76191 5.77003 5.83734 5.85743 5.88193 5.94845 6.02282 6.05427 6.10972 6.18043 6.22955 6.27260 6.38710 6.44872 6.48894 6.56069 6.59057 6.66159 6.76511 6.94246 6.96395 7.03654 7.28550 7.42218 7.51448 7.63172 7.79775 7.91201 8.55504 9.01770 9.59071 11.09277 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013992 B = 0.004060 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.609259 B = 6895.580386 C = 8090.870010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.074 0.926 4 C -0.138 4.138 5 C -0.009 4.009 6 C -0.519 4.519 7 H 0.069 0.931 8 C 0.066 3.934 9 N -0.904 5.904 10 Si 0.878 3.122 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.264 1.264 14 N -0.665 5.665 15 C 0.103 3.897 16 C -0.055 4.055 17 C -0.108 4.108 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.157 4.157 21 C 0.110 3.890 22 N -0.482 5.482 23 C 0.072 3.928 24 C -0.114 4.114 25 C -0.120 4.120 26 C -0.115 4.115 27 C 0.059 3.941 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.012 0.988 34 H 0.007 0.993 35 H 0.262 0.738 36 H 0.337 0.663 37 H 0.086 0.914 38 H 0.041 0.959 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.024 0.976 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.054 0.946 49 H 0.073 0.927 50 H 0.062 0.938 51 H 0.072 0.928 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.301 0.200 21.167 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 H 0.092 0.908 4 C -0.177 4.177 5 C -0.046 4.046 6 C -0.557 4.557 7 H 0.088 0.912 8 C -0.135 4.135 9 N -0.543 5.543 10 Si 0.706 3.294 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.189 1.189 14 N -0.296 5.296 15 C -0.026 4.026 16 C -0.056 4.056 17 C -0.127 4.127 18 C -0.142 4.142 19 C -0.136 4.136 20 C -0.177 4.177 21 C 0.016 3.984 22 N -0.203 5.203 23 C -0.055 4.055 24 C -0.152 4.152 25 C -0.158 4.158 26 C -0.153 4.153 27 C -0.067 4.067 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.030 0.970 34 H 0.026 0.974 35 H 0.072 0.928 36 H 0.155 0.845 37 H 0.104 0.896 38 H 0.059 0.941 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.043 0.957 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.092 0.908 50 H 0.081 0.919 51 H 0.090 0.910 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -13.789 0.597 20.993 25.124 hybrid contribution 1.674 -0.647 0.736 1.940 sum -12.115 -0.050 21.729 24.878 Atomic orbital electron populations 1.21797 0.95416 1.01389 1.00820 1.21644 0.94666 0.97818 0.88662 0.90768 1.22197 0.98584 0.99902 0.97066 1.19535 0.91726 0.96391 0.96948 1.21151 0.92499 1.39516 1.02549 0.91247 1.25044 0.98446 0.94717 0.95284 1.69928 1.14438 1.46920 1.22986 0.86803 0.80838 0.79211 0.82596 1.20418 1.21448 1.18870 1.60743 1.15145 1.14244 1.39424 1.20772 1.00700 0.89004 0.92105 1.19900 0.95209 0.95829 0.94672 1.21236 0.96113 0.96410 0.98962 1.21131 1.00181 1.00346 0.92563 1.20939 0.96837 0.98238 0.97562 1.21589 0.98848 0.99052 0.98250 1.18528 0.93765 0.94084 0.92065 1.59374 1.02672 1.05312 1.52951 1.22021 0.98826 0.90108 0.94501 1.21564 0.94351 0.97079 1.02228 1.21573 0.97872 0.97388 0.98970 1.21565 0.96734 0.95424 1.01540 1.22130 0.90214 0.97271 0.97120 0.92509 0.93196 0.93055 0.92733 0.92567 0.97017 0.97442 0.92817 0.84454 0.89574 0.94121 0.85487 0.86231 0.86638 0.86926 0.95742 0.89900 0.90480 0.91929 0.92058 0.92735 0.90833 0.91906 0.90991 0.95191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.92 37.16 0.33 -1.55 16 2 C 0.08 1.31 3.18 -67.71 -0.22 1.09 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 4 C -0.14 -2.71 4.42 -26.73 -0.12 -2.82 16 5 C -0.01 -0.20 3.62 -27.88 -0.10 -0.30 16 6 C -0.52 -14.86 9.65 -34.44 -0.33 -15.20 16 7 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.90 -28.10 13.96 55.43 0.77 -27.32 16 10 Si 0.88 21.85 27.41 -169.99 -4.66 17.19 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 13 H -0.26 -6.31 6.67 56.52 0.38 -5.93 16 14 N -0.67 -10.29 6.38 -107.99 -0.69 -10.98 16 15 C 0.10 1.54 4.60 -4.98 -0.02 1.52 16 16 C -0.05 -0.78 5.42 -104.42 -0.57 -1.34 16 17 C -0.11 -1.52 9.66 -39.61 -0.38 -1.90 16 18 C -0.12 -1.53 10.04 -39.54 -0.40 -1.93 16 19 C -0.12 -1.33 10.04 -39.61 -0.40 -1.73 16 20 C -0.16 -1.85 8.70 -39.38 -0.34 -2.19 16 21 C 0.11 1.41 4.66 -83.79 -0.39 1.02 16 22 N -0.48 -5.57 3.87 -171.14 -0.66 -6.24 16 23 C 0.07 0.79 5.18 -3.83 -0.02 0.77 16 24 C -0.11 -1.08 6.09 -26.65 -0.16 -1.24 16 25 C -0.12 -0.99 6.00 -26.62 -0.16 -1.15 16 26 C -0.11 -0.99 6.09 -26.65 -0.16 -1.16 16 27 C 0.06 0.60 5.10 -3.84 -0.02 0.58 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 30 H 0.05 0.71 6.36 -51.93 -0.33 0.38 16 31 H 0.05 1.08 6.28 -51.93 -0.33 0.76 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.01 0.28 7.76 -51.93 -0.40 -0.12 16 34 H 0.01 0.17 5.99 -51.93 -0.31 -0.14 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.34 5.75 7.27 -39.29 -0.29 5.46 16 37 H 0.09 1.27 6.04 -51.93 -0.31 0.96 16 38 H 0.04 0.69 6.13 -51.93 -0.32 0.37 16 39 H 0.13 1.83 8.00 -52.49 -0.42 1.41 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 42 H 0.11 1.18 7.13 -52.48 -0.37 0.80 16 43 H 0.02 0.26 7.60 -51.93 -0.39 -0.14 16 44 H 0.08 1.05 8.11 -51.93 -0.42 0.63 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 52 H 0.03 0.29 7.29 -51.93 -0.38 -0.09 16 LS Contribution 395.25 15.07 5.96 5.96 Total: -1.00 -29.93 395.25 -12.19 -42.12 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -9.35 Total: 4.98 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -3.56 Total: -25.71 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.58 Total: -44.54 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.66 Total: 17.19 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.93 -12.19 -42.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482835.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.920 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds