Wall clock time and date at job start Tue Mar 31 2020 11:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47192 * 2 1 4 4 C 1.53000 * 109.46778 * 240.00036 * 2 1 3 5 5 C 1.53005 * 109.46426 * 176.46329 * 4 2 1 6 6 C 1.50703 * 109.47049 * 183.82493 * 5 4 2 7 7 H 1.08000 * 119.99840 * 5.00033 * 6 5 4 8 8 C 1.37872 * 120.00538 * 185.00188 * 6 5 4 9 9 N 1.31515 * 120.00588 * 184.89855 * 8 6 5 10 10 Si 1.86806 * 119.99628 * 4.89944 * 8 6 5 11 11 H 1.48501 * 109.47252 * 94.10015 * 10 8 6 12 12 H 1.48504 * 109.47194 * 214.10400 * 10 8 6 13 13 H 1.48502 * 109.47169 * 334.10164 * 10 8 6 14 14 N 1.46900 * 109.46650 * 120.00281 * 2 1 3 15 15 C 1.46896 * 110.99999 * 58.68837 * 14 2 1 16 16 C 1.50705 * 109.46917 * 181.15127 * 15 14 2 17 17 C 1.38130 * 120.03205 * 255.02351 * 16 15 14 18 18 C 1.38264 * 120.07255 * 179.97438 * 17 16 15 19 19 C 1.38316 * 120.14800 * 359.97438 * 18 17 16 20 20 C 1.38079 * 120.07593 * 359.97438 * 19 18 17 21 21 C 1.38885 * 120.04038 * 74.74964 * 16 15 14 22 22 N 1.39672 * 120.07422 * 0.02562 * 21 16 15 23 23 C 1.46850 * 110.99622 * 244.86984 * 22 21 16 24 24 C 1.53047 * 109.51971 * 174.16098 * 23 22 21 25 25 C 1.53114 * 109.27645 * 59.17950 * 24 23 22 26 26 C 1.53109 * 109.16402 * 302.34265 * 25 24 23 27 27 C 1.46839 * 111.00166 * 120.66157 * 22 21 16 28 28 H 1.08991 * 109.47133 * 300.00068 * 1 2 3 29 29 H 1.09008 * 109.46486 * 59.99930 * 1 2 3 30 30 H 1.09000 * 109.46974 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47572 * 296.46007 * 4 2 1 32 32 H 1.09001 * 109.47386 * 56.46959 * 4 2 1 33 33 H 1.08999 * 109.47476 * 303.81898 * 5 4 2 34 34 H 1.08999 * 109.47627 * 63.82803 * 5 4 2 35 35 H 0.96998 * 120.00314 * 179.97438 * 9 8 6 36 36 H 1.00903 * 110.99930 * 182.64015 * 14 2 1 37 37 H 1.09006 * 109.47188 * 301.14314 * 15 14 2 38 38 H 1.08993 * 109.47987 * 61.14857 * 15 14 2 39 39 H 1.07994 * 119.96445 * 359.97313 * 17 16 15 40 40 H 1.07999 * 119.92699 * 179.97438 * 18 17 16 41 41 H 1.08005 * 119.95837 * 180.02562 * 19 18 17 42 42 H 1.08003 * 120.03533 * 180.02562 * 20 19 18 43 43 H 1.09001 * 109.46646 * 294.17158 * 23 22 21 44 44 H 1.09002 * 109.46424 * 54.14712 * 23 22 21 45 45 H 1.09002 * 109.50115 * 299.23562 * 24 23 22 46 46 H 1.09000 * 109.53416 * 179.14064 * 24 23 22 47 47 H 1.09000 * 109.51849 * 182.43710 * 25 24 23 48 48 H 1.08999 * 109.57719 * 62.28311 * 25 24 23 49 49 H 1.08998 * 109.50513 * 297.71835 * 26 25 24 50 50 H 1.08999 * 109.54217 * 177.61461 * 26 25 24 51 51 H 1.09002 * 109.46461 * 305.85524 * 27 22 21 52 52 H 1.09005 * 109.46378 * 65.83611 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5674 -0.6446 -1.2945 6 6 4.0643 -1.2724 -2.5712 7 1 3.3596 -1.6118 -3.3160 8 6 5.4185 -1.4135 -2.7886 9 7 5.8552 -1.8721 -3.9413 10 14 6.6329 -0.9535 -1.4458 11 1 6.9746 -2.1614 -0.6524 12 1 7.8659 -0.4006 -2.0617 13 1 6.0236 0.0672 -0.5558 14 7 2.0196 -0.6926 1.1994 15 6 1.5231 -2.0742 1.2491 16 6 2.0217 -2.7423 2.5045 17 6 3.0452 -3.6674 2.4355 18 6 3.5037 -4.2805 3.5869 19 6 2.9400 -3.9697 4.8111 20 6 1.9173 -3.0451 4.8873 21 6 1.4566 -2.4245 3.7327 22 7 0.4251 -1.4857 3.8067 23 6 0.8469 -0.2988 4.5615 24 6 -0.2520 0.7646 4.4984 25 6 -1.5433 0.1927 5.0900 26 6 -1.9344 -1.0697 4.3169 27 6 -0.7867 -2.0798 4.3852 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7294 -1.7656 -1.2182 32 1 1.6259 -0.2453 -2.1381 33 1 3.8802 0.3989 -1.2571 34 1 3.9836 -1.1794 -0.4408 35 1 6.8080 -1.9710 -4.0943 36 1 3.0273 -0.6687 1.2448 37 1 0.4330 -2.0688 1.2488 38 1 1.8839 -2.6216 0.3783 39 1 3.4877 -3.9121 1.4813 40 1 4.3037 -5.0038 3.5302 41 1 3.3008 -4.4502 5.7086 42 1 1.4779 -2.8025 5.8436 43 1 1.0266 -0.5741 5.6007 44 1 1.7639 0.1004 4.1279 45 1 -0.4225 1.0505 3.4605 46 1 0.0544 1.6398 5.0713 47 1 -2.3401 0.9318 5.0077 48 1 -1.3851 -0.0570 6.1392 49 1 -2.1314 -0.8126 3.2762 50 1 -2.8297 -1.5057 4.7599 51 1 -1.0564 -2.9744 3.8236 52 1 -0.5995 -2.3467 5.4253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172482835.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:14 Heat of formation + Delta-G solvation = -2.323082 kcal Electronic energy + Delta-G solvation = -27829.314738 eV Core-core repulsion = 24405.846038 eV Total energy + Delta-G solvation = -3423.468700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.24820 -39.11591 -38.47417 -35.24772 -34.53193 -33.60398 -31.95138 -31.65982 -30.41687 -29.71193 -27.17017 -26.20817 -25.20179 -23.87288 -22.97757 -22.86540 -21.91591 -20.41831 -20.35837 -18.93368 -18.20404 -17.32542 -16.63987 -16.36943 -16.12667 -15.89950 -15.56578 -15.42679 -15.27202 -15.05376 -14.64645 -14.45522 -14.38146 -14.26900 -13.89664 -13.71809 -13.47134 -13.39602 -13.27400 -13.16398 -12.93919 -12.78810 -12.61383 -12.22644 -12.05834 -11.98616 -11.86519 -11.66611 -11.56900 -11.52243 -11.31658 -11.27860 -11.24622 -11.16063 -10.75408 -9.76558 -9.46103 -9.19613 -9.10776 -8.32245 -6.35703 0.40880 0.44660 1.32650 1.33956 1.46972 2.33206 2.77794 2.96160 3.03331 3.54269 3.93993 3.97266 4.02405 4.07224 4.09518 4.12186 4.20368 4.38193 4.39306 4.40255 4.48277 4.52571 4.55788 4.63969 4.70885 4.73579 4.76496 4.81042 4.88360 4.90278 4.95509 5.00975 5.03107 5.10216 5.11165 5.18700 5.22426 5.28520 5.32485 5.37798 5.42815 5.45968 5.51159 5.56427 5.60485 5.63094 5.65316 5.70946 5.99052 6.22384 6.25763 6.29113 6.54552 6.63511 6.72768 7.28897 8.84804 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013992 B = 0.004060 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.609259 B = 6895.580386 C = 8090.870010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.091 3.909 3 H 0.077 0.923 4 C -0.130 4.130 5 C -0.001 4.001 6 C -0.532 4.532 7 H 0.026 0.974 8 C 0.005 3.995 9 N -0.951 5.951 10 Si 0.950 3.050 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.245 1.245 14 N -0.654 5.654 15 C 0.114 3.886 16 C -0.075 4.075 17 C -0.127 4.127 18 C -0.129 4.129 19 C -0.111 4.111 20 C -0.157 4.157 21 C 0.108 3.892 22 N -0.491 5.491 23 C 0.075 3.925 24 C -0.110 4.110 25 C -0.116 4.116 26 C -0.111 4.111 27 C 0.060 3.940 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.013 0.987 34 H 0.015 0.985 35 H 0.266 0.734 36 H 0.329 0.671 37 H 0.088 0.912 38 H 0.015 0.985 39 H 0.112 0.888 40 H 0.136 0.864 41 H 0.144 0.856 42 H 0.130 0.870 43 H 0.031 0.969 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.078 0.922 51 H 0.063 0.937 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.864 0.969 24.823 28.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.019 4.019 3 H 0.095 0.905 4 C -0.169 4.169 5 C -0.038 4.038 6 C -0.570 4.570 7 H 0.045 0.955 8 C -0.192 4.192 9 N -0.592 5.592 10 Si 0.773 3.227 11 H -0.193 1.193 12 H -0.210 1.210 13 H -0.168 1.168 14 N -0.283 5.283 15 C -0.015 4.015 16 C -0.076 4.076 17 C -0.146 4.146 18 C -0.147 4.147 19 C -0.130 4.130 20 C -0.177 4.177 21 C 0.014 3.986 22 N -0.213 5.213 23 C -0.051 4.051 24 C -0.148 4.148 25 C -0.153 4.153 26 C -0.149 4.149 27 C -0.066 4.066 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.106 0.894 38 H 0.033 0.967 39 H 0.130 0.870 40 H 0.153 0.847 41 H 0.162 0.838 42 H 0.148 0.852 43 H 0.049 0.951 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.097 0.903 51 H 0.082 0.918 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.383 1.369 24.658 28.579 hybrid contribution 1.799 -0.948 -0.464 2.086 sum -12.584 0.421 24.194 27.274 Atomic orbital electron populations 1.21696 0.93317 1.01581 1.01794 1.21582 0.96250 0.97286 0.86824 0.90484 1.22104 0.96012 0.99962 0.98809 1.19433 0.94301 0.95649 0.94438 1.21502 0.92208 1.39619 1.03699 0.95548 1.26025 1.00687 0.94617 0.97834 1.70082 1.15157 1.48545 1.25417 0.85666 0.77910 0.79699 0.79447 1.19290 1.20974 1.16799 1.60802 1.14402 1.14580 1.38534 1.20624 1.00582 0.88343 0.91911 1.19863 0.96183 0.96702 0.94840 1.21249 0.96791 0.97405 0.99192 1.21342 1.00594 1.00431 0.92360 1.21268 0.96076 0.97574 0.98099 1.21807 0.98746 0.98669 0.98515 1.18612 0.93906 0.94256 0.91861 1.59358 1.02830 1.05384 1.53710 1.21976 0.98546 0.90149 0.94442 1.21528 0.94573 0.97026 1.01689 1.21545 0.97402 0.97268 0.99108 1.21547 0.96772 0.95407 1.01155 1.22161 0.89918 0.97354 0.97213 0.91241 0.92446 0.93267 0.93626 0.93545 0.96867 0.96677 0.92532 0.85413 0.89391 0.96688 0.87020 0.84652 0.83849 0.85179 0.95076 0.91919 0.91890 0.90873 0.91009 0.91947 0.91943 0.90300 0.91796 0.94422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.92 71.98 0.64 -2.68 16 2 C 0.09 2.84 3.18 44.92 0.14 2.98 16 3 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 4 C -0.13 -5.16 4.42 30.60 0.14 -5.03 16 5 C 0.00 -0.04 3.62 29.85 0.11 0.07 16 6 C -0.53 -31.55 9.65 25.60 0.25 -31.30 16 7 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 8 C 0.00 0.30 5.47 84.65 0.46 0.76 16 9 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 10 Si 0.95 45.19 27.41 68.60 1.88 47.07 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.24 -10.79 6.67 99.48 0.66 -10.13 16 14 N -0.65 -19.94 6.38 -495.57 -3.16 -23.11 16 15 C 0.11 3.45 4.60 85.56 0.39 3.85 16 16 C -0.07 -2.10 5.42 -19.73 -0.11 -2.21 16 17 C -0.13 -3.58 9.66 22.25 0.21 -3.37 16 18 C -0.13 -3.01 10.04 22.29 0.22 -2.78 16 19 C -0.11 -2.25 10.04 22.25 0.22 -2.02 16 20 C -0.16 -3.32 8.70 22.40 0.19 -3.12 16 21 C 0.11 2.63 4.66 38.21 0.18 2.81 16 22 N -0.49 -10.60 3.87 -695.36 -2.69 -13.29 16 23 C 0.08 1.50 5.18 86.33 0.45 1.95 16 24 C -0.11 -1.84 6.09 30.65 0.19 -1.65 16 25 C -0.12 -1.57 6.00 30.67 0.18 -1.39 16 26 C -0.11 -1.65 6.09 30.64 0.19 -1.47 16 27 C 0.06 1.08 5.10 86.33 0.44 1.52 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.05 1.31 6.36 -2.39 -0.02 1.30 16 31 H 0.05 1.88 6.28 -2.39 -0.01 1.87 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.01 0.62 7.76 -2.39 -0.02 0.60 16 34 H 0.01 0.69 5.99 -2.39 -0.01 0.68 16 35 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 36 H 0.33 11.03 7.27 -89.69 -0.65 10.37 16 37 H 0.09 2.60 6.04 -2.38 -0.01 2.59 16 38 H 0.01 0.53 6.13 -2.39 -0.01 0.51 16 39 H 0.11 3.38 8.00 -2.91 -0.02 3.36 16 40 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 41 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 42 H 0.13 2.27 7.13 -2.91 -0.02 2.25 16 43 H 0.03 0.58 7.60 -2.39 -0.02 0.56 16 44 H 0.06 1.51 8.11 -2.39 -0.02 1.49 16 45 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.06 1.25 8.11 -2.39 -0.02 1.23 16 52 H 0.04 0.62 7.29 -2.38 -0.02 0.61 16 Total: -1.00 -66.25 395.25 1.01 -65.24 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.18 Total: 27.80 kcal Atomic # 6 Polarization: -47.59 SS G_CDS: 4.50 Total: -43.08 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -5.56 Total: -97.03 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -66.25 1.01 -65.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482835.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.921 kcal (2) G-P(sol) polarization free energy of solvation -66.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds