Wall clock time and date at job start Tue Mar 31 2020 11:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.53000 * 109.47060 * 175.00005 * 4 2 1 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99611 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00327 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99743 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46999 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46979 * 120.00025 * 10 8 6 13 13 H 1.48498 * 109.46942 * 239.99938 * 10 8 6 14 14 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 15 15 C 1.46903 * 110.99778 * 58.96056 * 14 2 1 16 16 C 1.46893 * 111.00505 * 295.00569 * 14 2 1 17 17 H 1.09000 * 110.27212 * 59.29425 * 16 14 2 18 18 C 1.54604 * 110.30820 * 297.20953 * 16 14 2 19 19 C 1.55103 * 102.84335 * 219.18549 * 18 16 14 20 20 N 1.48532 * 103.28556 * 37.30460 * 19 18 16 21 21 C 1.46897 * 111.00032 * 200.32995 * 20 19 18 22 22 C 1.50696 * 109.47298 * 307.39766 * 21 20 19 23 23 C 1.38231 * 119.99950 * 269.72296 * 22 21 20 24 24 C 1.38242 * 119.99809 * 179.76486 * 23 22 21 25 25 C 1.38228 * 120.00075 * 0.50913 * 24 23 22 26 26 C 1.38239 * 120.00020 * 359.74246 * 25 24 23 27 27 C 1.38235 * 119.99899 * 89.99961 * 22 21 20 28 28 C 1.47899 * 105.81914 * 320.84753 * 20 19 18 29 29 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 30 30 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 32 32 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 33 33 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 34 34 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 35 35 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 36 36 H 0.97000 * 120.00354 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.47099 * 59.99461 * 15 14 2 38 38 H 1.08997 * 109.47339 * 179.97438 * 15 14 2 39 39 H 1.08999 * 109.46738 * 300.00170 * 15 14 2 40 40 H 1.09005 * 110.71921 * 337.48156 * 18 16 14 41 41 H 1.08995 * 110.72379 * 100.76688 * 18 16 14 42 42 H 1.08999 * 110.59375 * 278.87112 * 19 18 16 43 43 H 1.09000 * 110.82650 * 155.84690 * 19 18 16 44 44 H 1.08999 * 109.46759 * 67.39629 * 21 20 19 45 45 H 1.09002 * 109.47357 * 187.39653 * 21 20 19 46 46 H 1.07994 * 120.00238 * 0.02562 * 23 22 21 47 47 H 1.07998 * 119.99860 * 180.23639 * 24 23 22 48 48 H 1.08005 * 120.00470 * 179.72347 * 25 24 23 49 49 H 1.08000 * 119.99857 * 179.97438 * 26 25 24 50 50 H 1.08002 * 120.00379 * 359.97438 * 27 22 21 51 51 H 1.09000 * 109.91534 * 265.97145 * 28 20 19 52 52 H 1.09000 * 109.91955 * 144.68637 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 6 4.0671 -1.3231 -2.5444 7 1 3.3687 -1.8036 -3.2135 8 6 5.4184 -1.3591 -2.8162 9 7 6.2688 -0.7736 -2.0017 10 14 6.0411 -2.2396 -4.3415 11 1 4.8911 -2.8112 -5.0872 12 1 6.7633 -1.2752 -5.2096 13 1 6.9638 -3.3319 -3.9404 14 7 2.0196 -0.6924 1.1995 15 6 1.5284 -2.0761 1.2461 16 6 1.6486 0.0392 2.4181 17 1 0.5650 0.1361 2.4853 18 6 2.3139 1.4347 2.4296 19 6 2.7190 1.6112 3.9164 20 7 3.1459 0.2465 4.3182 21 6 3.1089 0.0919 5.7785 22 6 3.8921 1.2071 6.4218 23 6 5.2413 1.0467 6.6763 24 6 5.9608 2.0716 7.2620 25 6 5.3289 3.2528 7.6027 26 6 3.9785 3.4113 7.3529 27 6 3.2601 2.3884 6.7626 28 6 2.1991 -0.6815 3.6627 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6054 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2055 34 1 3.8532 0.4371 -1.3573 35 1 3.9994 -1.0726 -0.4259 36 1 7.2194 -0.7986 -2.1931 37 1 1.8763 -2.6150 0.3648 38 1 1.9060 -2.5658 2.1436 39 1 0.4385 -2.0742 1.2639 40 1 3.1936 1.4479 1.7862 41 1 1.6026 2.2036 2.1282 42 1 1.8653 1.9377 4.5102 43 1 3.5447 2.3164 4.0120 44 1 2.0750 0.1292 6.1216 45 1 3.5487 -0.8667 6.0537 46 1 5.7342 0.1224 6.4138 47 1 7.0157 1.9477 7.4573 48 1 5.8900 4.0519 8.0643 49 1 3.4847 4.3340 7.6195 50 1 2.2051 2.5122 6.5674 51 1 1.3829 -0.9217 4.3440 52 1 2.7180 -1.5926 3.3650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492426.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:43 Heat of formation + Delta-G solvation = 34.956056 kcal Electronic energy + Delta-G solvation = -26905.913228 eV Core-core repulsion = 23484.061073 eV Total energy + Delta-G solvation = -3421.852155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.01965 -39.02606 -37.09924 -33.66280 -32.70094 -31.27910 -31.01847 -30.13360 -29.11480 -27.68912 -26.12933 -25.19259 -24.36540 -22.77399 -21.74698 -21.46534 -20.56887 -20.05271 -18.55464 -16.97781 -16.62752 -16.13350 -15.96083 -15.44016 -15.28997 -14.50716 -14.43973 -14.19877 -14.01914 -13.75336 -13.53472 -13.34220 -13.20538 -12.76672 -12.71415 -12.37220 -12.13353 -11.95258 -11.80829 -11.59955 -11.55650 -11.43759 -11.15155 -11.08319 -11.00291 -10.88177 -10.81790 -10.63794 -10.47508 -10.38992 -10.05147 -9.54683 -9.15309 -9.03262 -8.94703 -8.82610 -8.32505 -8.19369 -7.69587 -5.84057 -3.85640 1.19440 1.28500 3.38569 3.45899 3.49633 3.58159 4.14943 4.26660 4.52309 4.57205 4.70090 4.76809 4.87194 4.90492 5.00122 5.10444 5.26681 5.33067 5.37245 5.44189 5.44454 5.51003 5.52287 5.55024 5.56102 5.66449 5.67839 5.78758 5.86293 5.89681 5.91344 5.94153 6.02674 6.06948 6.19419 6.30919 6.32119 6.35200 6.38319 6.44148 6.48188 6.52248 6.71495 6.85541 6.91087 6.96047 7.04569 7.33463 7.59339 7.64675 7.89660 8.11762 8.27711 8.61235 9.23734 9.76877 11.26644 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013441 B = 0.002962 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.695954 B = 9452.259293 C =10783.703779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.081 3.919 3 H 0.078 0.922 4 C -0.104 4.104 5 C 0.031 3.969 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.891 5.891 10 Si 0.885 3.115 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.285 1.285 14 N -0.508 5.508 15 C 0.017 3.983 16 C 0.074 3.926 17 H 0.041 0.959 18 C -0.117 4.117 19 C 0.041 3.959 20 N -0.501 5.501 21 C 0.084 3.916 22 C -0.078 4.078 23 C -0.097 4.097 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.114 4.114 28 C 0.042 3.958 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.009 0.991 35 H 0.032 0.968 36 H 0.257 0.743 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.019 0.981 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.040 0.960 45 H 0.084 0.916 46 H 0.125 0.875 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.116 0.884 51 H 0.038 0.962 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.319 5.711 20.244 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.027 4.027 3 H 0.097 0.903 4 C -0.141 4.141 5 C -0.006 4.006 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.531 5.531 10 Si 0.713 3.287 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.211 1.211 14 N -0.232 5.232 15 C -0.131 4.131 16 C -0.035 4.035 17 H 0.059 0.941 18 C -0.156 4.156 19 C -0.087 4.087 20 N -0.225 5.225 21 C -0.043 4.043 22 C -0.079 4.079 23 C -0.115 4.115 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.133 4.133 28 C -0.086 4.086 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.037 0.963 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.056 0.944 43 H 0.100 0.900 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.143 0.857 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.134 0.866 51 H 0.056 0.944 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.090 5.594 20.083 22.362 hybrid contribution -1.301 -0.247 -0.530 1.427 sum -9.391 5.347 19.553 22.340 Atomic orbital electron populations 1.22498 0.99200 1.01571 1.01166 1.21868 0.90808 0.98909 0.91118 0.90342 1.21749 1.00904 0.98334 0.93155 1.18990 0.87961 0.96702 0.96990 1.21371 0.91827 1.34090 1.08466 0.93167 1.24995 0.97173 0.95794 0.96413 1.69992 1.02101 1.44239 1.36759 0.86659 0.78813 0.79565 0.83655 1.19949 1.21199 1.21148 1.62273 1.58731 1.01580 1.00582 1.22508 0.96797 0.90666 1.03152 1.22442 0.96312 0.94156 0.90575 0.94131 1.22624 1.01678 0.95001 0.96264 1.23237 0.98711 0.91438 0.95317 1.64908 1.48054 1.03992 1.05521 1.21260 0.97585 0.97204 0.88298 1.19759 0.94497 0.95207 0.98396 1.21086 0.93464 0.99374 0.97608 1.21177 0.99898 0.93701 0.99112 1.21142 0.94877 0.97643 1.00443 1.21088 0.94539 0.98779 0.99700 1.21056 0.99732 0.93317 0.99179 1.23049 0.93844 0.97535 0.94132 0.92353 0.92653 0.93632 0.93437 0.93287 0.97307 0.94913 0.93305 0.90112 0.91925 0.96268 0.88688 0.91657 0.94421 0.90034 0.94165 0.89791 0.85736 0.86070 0.86313 0.86294 0.86550 0.94373 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.60 8.51 37.15 0.32 -2.29 16 2 C 0.08 1.38 2.19 -67.71 -0.15 1.24 16 3 H 0.08 1.40 6.94 -51.92 -0.36 1.04 16 4 C -0.10 -2.15 4.44 -26.73 -0.12 -2.27 16 5 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 6 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.57 13.29 55.43 0.74 -26.84 16 10 Si 0.88 22.20 29.54 -169.99 -5.02 17.18 16 11 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 N -0.51 -8.41 4.00 -225.28 -0.90 -9.31 16 15 C 0.02 0.25 8.53 60.07 0.51 0.76 16 16 C 0.07 1.03 2.42 -66.36 -0.16 0.87 16 17 H 0.04 0.54 6.46 -51.93 -0.34 0.20 16 18 C -0.12 -1.63 5.49 -24.78 -0.14 -1.77 16 19 C 0.04 0.51 4.98 -1.81 -0.01 0.50 16 20 N -0.50 -6.59 5.39 -231.79 -1.25 -7.84 16 21 C 0.08 0.91 5.19 -4.98 -0.03 0.89 16 22 C -0.08 -0.85 4.59 -104.63 -0.48 -1.33 16 23 C -0.10 -1.05 9.70 -39.58 -0.38 -1.43 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 26 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 27 C -0.11 -1.13 8.34 -39.58 -0.33 -1.46 16 28 C 0.04 0.55 5.85 -2.76 -0.02 0.53 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.76 6.38 -51.92 -0.33 0.43 16 31 H 0.04 0.58 6.52 -51.93 -0.34 0.24 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 1.00 6.17 -51.93 -0.32 0.68 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.03 0.93 7.75 -51.93 -0.40 0.53 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.08 1.37 6.22 -51.93 -0.32 1.05 16 38 H 0.06 0.86 6.04 -51.93 -0.31 0.55 16 39 H 0.02 0.26 6.28 -51.93 -0.33 -0.07 16 40 H 0.09 1.62 7.87 -51.93 -0.41 1.21 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.04 0.41 7.09 -51.93 -0.37 0.05 16 43 H 0.08 1.08 7.72 -51.93 -0.40 0.68 16 44 H 0.04 0.40 7.76 -51.93 -0.40 -0.01 16 45 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 46 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 47 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 48 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 49 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 50 H 0.12 1.01 7.38 -52.49 -0.39 0.62 16 51 H 0.04 0.43 7.57 -51.93 -0.39 0.04 16 52 H 0.09 1.35 6.14 -51.93 -0.32 1.03 16 LS Contribution 392.56 15.07 5.92 5.92 Total: -1.00 -31.50 392.56 -12.31 -43.82 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -9.08 Total: 0.57 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -2.72 Total: -23.50 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -1.41 Total: -43.99 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.50 -12.31 -43.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492426.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.776 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds