Wall clock time and date at job start Tue Mar 31 2020 11:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.53000 * 109.47060 * 175.00005 * 4 2 1 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99611 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00327 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99743 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46999 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46979 * 120.00025 * 10 8 6 13 13 H 1.48498 * 109.46942 * 239.99938 * 10 8 6 14 14 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 15 15 C 1.46903 * 110.99778 * 58.96056 * 14 2 1 16 16 C 1.46893 * 111.00505 * 295.00569 * 14 2 1 17 17 H 1.09000 * 110.27212 * 59.29425 * 16 14 2 18 18 C 1.54604 * 110.30820 * 297.20953 * 16 14 2 19 19 C 1.55103 * 102.84335 * 219.18549 * 18 16 14 20 20 N 1.48532 * 103.28556 * 37.30460 * 19 18 16 21 21 C 1.46897 * 111.00032 * 200.32995 * 20 19 18 22 22 C 1.50696 * 109.47298 * 307.39766 * 21 20 19 23 23 C 1.38231 * 119.99950 * 269.72296 * 22 21 20 24 24 C 1.38242 * 119.99809 * 179.76486 * 23 22 21 25 25 C 1.38228 * 120.00075 * 0.50913 * 24 23 22 26 26 C 1.38239 * 120.00020 * 359.74246 * 25 24 23 27 27 C 1.38235 * 119.99899 * 89.99961 * 22 21 20 28 28 C 1.47899 * 105.81914 * 320.84753 * 20 19 18 29 29 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 30 30 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 32 32 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 33 33 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 34 34 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 35 35 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 36 36 H 0.97000 * 120.00354 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.47099 * 59.99461 * 15 14 2 38 38 H 1.08997 * 109.47339 * 179.97438 * 15 14 2 39 39 H 1.08999 * 109.46738 * 300.00170 * 15 14 2 40 40 H 1.09005 * 110.71921 * 337.48156 * 18 16 14 41 41 H 1.08995 * 110.72379 * 100.76688 * 18 16 14 42 42 H 1.08999 * 110.59375 * 278.87112 * 19 18 16 43 43 H 1.09000 * 110.82650 * 155.84690 * 19 18 16 44 44 H 1.08999 * 109.46759 * 67.39629 * 21 20 19 45 45 H 1.09002 * 109.47357 * 187.39653 * 21 20 19 46 46 H 1.07994 * 120.00238 * 0.02562 * 23 22 21 47 47 H 1.07998 * 119.99860 * 180.23639 * 24 23 22 48 48 H 1.08005 * 120.00470 * 179.72347 * 25 24 23 49 49 H 1.08000 * 119.99857 * 179.97438 * 26 25 24 50 50 H 1.08002 * 120.00379 * 359.97438 * 27 22 21 51 51 H 1.09000 * 109.91534 * 265.97145 * 28 20 19 52 52 H 1.09000 * 109.91955 * 144.68637 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 6 4.0671 -1.3231 -2.5444 7 1 3.3687 -1.8036 -3.2135 8 6 5.4184 -1.3591 -2.8162 9 7 6.2688 -0.7736 -2.0017 10 14 6.0411 -2.2396 -4.3415 11 1 4.8911 -2.8112 -5.0872 12 1 6.7633 -1.2752 -5.2096 13 1 6.9638 -3.3319 -3.9404 14 7 2.0196 -0.6924 1.1995 15 6 1.5284 -2.0761 1.2461 16 6 1.6486 0.0392 2.4181 17 1 0.5650 0.1361 2.4853 18 6 2.3139 1.4347 2.4296 19 6 2.7190 1.6112 3.9164 20 7 3.1459 0.2465 4.3182 21 6 3.1089 0.0919 5.7785 22 6 3.8921 1.2071 6.4218 23 6 5.2413 1.0467 6.6763 24 6 5.9608 2.0716 7.2620 25 6 5.3289 3.2528 7.6027 26 6 3.9785 3.4113 7.3529 27 6 3.2601 2.3884 6.7626 28 6 2.1991 -0.6815 3.6627 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6054 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2055 34 1 3.8532 0.4371 -1.3573 35 1 3.9994 -1.0726 -0.4259 36 1 7.2194 -0.7986 -2.1931 37 1 1.8763 -2.6150 0.3648 38 1 1.9060 -2.5658 2.1436 39 1 0.4385 -2.0742 1.2639 40 1 3.1936 1.4479 1.7862 41 1 1.6026 2.2036 2.1282 42 1 1.8653 1.9377 4.5102 43 1 3.5447 2.3164 4.0120 44 1 2.0750 0.1292 6.1216 45 1 3.5487 -0.8667 6.0537 46 1 5.7342 0.1224 6.4138 47 1 7.0157 1.9477 7.4573 48 1 5.8900 4.0519 8.0643 49 1 3.4847 4.3340 7.6195 50 1 2.2051 2.5122 6.5674 51 1 1.3829 -0.9217 4.3440 52 1 2.7180 -1.5926 3.3650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492426.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:42 Heat of formation + Delta-G solvation = 16.670587 kcal Electronic energy + Delta-G solvation = -26906.706145 eV Core-core repulsion = 23484.061073 eV Total energy + Delta-G solvation = -3422.645073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.99626 -39.97730 -38.24745 -35.46975 -34.08381 -32.73657 -31.76709 -31.13465 -30.70816 -28.75780 -27.15321 -27.02694 -25.56059 -23.54814 -23.26035 -22.60185 -21.60501 -21.35136 -19.87448 -18.35442 -17.93523 -17.61142 -16.96296 -16.50305 -16.30669 -16.08747 -15.68456 -15.31641 -15.24293 -14.79151 -14.56438 -14.49924 -14.21871 -14.10558 -13.99526 -13.56815 -13.32902 -13.26376 -13.22491 -12.90548 -12.85881 -12.78042 -12.57263 -12.41575 -12.32013 -12.12571 -11.90332 -11.79563 -11.74459 -11.68763 -11.60885 -11.35093 -11.17741 -10.87830 -10.47979 -9.77706 -9.72519 -9.24998 -8.91035 -8.11856 -6.22851 0.44404 0.53923 1.39732 1.40337 1.53298 2.44197 2.79177 3.05334 3.20114 3.25833 3.57838 3.80660 3.93329 3.96797 4.04724 4.17864 4.23692 4.28063 4.28413 4.32863 4.41946 4.43052 4.50235 4.54056 4.63038 4.65060 4.69490 4.74810 4.77473 4.80501 4.85217 4.92141 4.96574 5.03055 5.06087 5.13525 5.16286 5.19120 5.19462 5.29159 5.35363 5.48768 5.58324 5.61112 5.65356 5.72807 5.91084 5.95960 6.04560 6.10334 6.16962 6.33517 6.37491 6.45143 6.97713 7.45311 8.99343 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013441 B = 0.002962 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.695954 B = 9452.259293 C =10783.703779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.088 3.912 3 H 0.064 0.936 4 C -0.093 4.093 5 C 0.044 3.956 6 C -0.541 4.541 7 H 0.055 0.945 8 C -0.002 4.002 9 N -0.931 5.931 10 Si 0.960 3.040 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.279 1.279 14 N -0.538 5.538 15 C 0.021 3.979 16 C 0.078 3.922 17 H 0.061 0.939 18 C -0.117 4.117 19 C 0.052 3.948 20 N -0.526 5.526 21 C 0.089 3.911 22 C -0.092 4.092 23 C -0.118 4.118 24 C -0.132 4.132 25 C -0.128 4.128 26 C -0.127 4.127 27 C -0.120 4.120 28 C 0.047 3.953 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.052 0.948 34 H -0.025 1.025 35 H 0.001 0.999 36 H 0.260 0.740 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.082 0.918 46 H 0.119 0.881 47 H 0.134 0.866 48 H 0.140 0.860 49 H 0.142 0.858 50 H 0.130 0.870 51 H 0.063 0.937 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.277 5.906 20.874 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.020 4.020 3 H 0.082 0.918 4 C -0.131 4.131 5 C 0.007 3.993 6 C -0.579 4.579 7 H 0.073 0.927 8 C -0.199 4.199 9 N -0.572 5.572 10 Si 0.785 3.215 11 H -0.186 1.186 12 H -0.205 1.205 13 H -0.205 1.205 14 N -0.262 5.262 15 C -0.126 4.126 16 C -0.030 4.030 17 H 0.079 0.921 18 C -0.155 4.155 19 C -0.075 4.075 20 N -0.251 5.251 21 C -0.039 4.039 22 C -0.092 4.092 23 C -0.137 4.137 24 C -0.150 4.150 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.138 4.138 28 C -0.081 4.081 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.071 0.929 34 H -0.007 1.007 35 H 0.019 0.981 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.101 0.899 46 H 0.137 0.863 47 H 0.152 0.848 48 H 0.158 0.842 49 H 0.160 0.840 50 H 0.148 0.852 51 H 0.081 0.919 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.065 5.785 20.717 23.748 hybrid contribution -0.617 -0.271 -0.681 0.959 sum -10.682 5.514 20.036 23.365 Atomic orbital electron populations 1.22351 0.96005 1.02373 1.02492 1.21623 0.93158 0.97438 0.89794 0.91760 1.21563 0.96731 0.99234 0.95553 1.18762 0.91915 0.93770 0.94885 1.21822 0.92447 1.34313 1.09339 0.92686 1.25958 0.97459 0.96538 0.99940 1.70144 1.02513 1.45595 1.38921 0.85476 0.78409 0.78300 0.79301 1.18620 1.20478 1.20507 1.62165 1.60133 1.02495 1.01405 1.22439 0.98073 0.89696 1.02407 1.22483 0.97307 0.93607 0.89630 0.92085 1.22567 1.00371 0.95959 0.96607 1.23107 0.98990 0.91008 0.94436 1.64828 1.48825 1.04291 1.07145 1.21244 0.98487 0.97289 0.86842 1.19854 0.94554 0.95821 0.99006 1.21222 0.94011 0.99786 0.98643 1.21420 1.00686 0.93860 0.99042 1.21467 0.95288 0.97854 1.00036 1.21425 0.94656 0.99452 0.98991 1.21256 1.00505 0.93035 0.99029 1.22969 0.94281 0.96609 0.94201 0.91705 0.92029 0.91641 0.93239 0.92941 1.00694 0.98059 0.93106 0.92751 0.90883 0.94007 0.92957 0.89973 0.92021 0.91373 0.92572 0.89928 0.86284 0.84840 0.84202 0.84047 0.85165 0.91863 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.45 8.51 71.98 0.61 -3.84 16 2 C 0.09 3.01 2.19 44.91 0.10 3.11 16 3 H 0.06 2.36 6.94 -2.38 -0.02 2.34 16 4 C -0.09 -3.94 4.44 30.59 0.14 -3.81 16 5 C 0.04 2.43 4.86 29.85 0.15 2.57 16 6 C -0.54 -32.15 9.11 25.60 0.23 -31.92 16 7 H 0.05 3.14 7.74 -2.91 -0.02 3.12 16 8 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 9 N -0.93 -59.44 13.29 21.45 0.28 -59.16 16 10 Si 0.96 46.06 29.54 68.60 2.03 48.09 16 11 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 N -0.54 -17.88 4.00 -866.66 -3.47 -21.34 16 15 C 0.02 0.64 8.53 127.69 1.09 1.72 16 16 C 0.08 2.09 2.42 45.80 0.11 2.20 16 17 H 0.06 1.40 6.46 -2.39 -0.02 1.39 16 18 C -0.12 -3.23 5.49 31.86 0.18 -3.05 16 19 C 0.05 1.27 4.98 86.71 0.43 1.70 16 20 N -0.53 -13.65 5.39 -887.26 -4.78 -18.43 16 21 C 0.09 1.84 5.19 85.56 0.44 2.28 16 22 C -0.09 -1.95 4.59 -19.87 -0.09 -2.04 16 23 C -0.12 -2.60 9.70 22.27 0.22 -2.39 16 24 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 25 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 26 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 27 C -0.12 -2.18 8.34 22.27 0.19 -1.99 16 28 C 0.05 1.17 5.85 86.44 0.51 1.68 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.51 6.38 -2.38 -0.02 1.50 16 31 H 0.06 1.44 6.52 -2.39 -0.02 1.42 16 32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.05 2.17 6.17 -2.39 -0.01 2.16 16 34 H -0.03 -1.55 8.14 -2.39 -0.02 -1.57 16 35 H 0.00 0.06 7.75 -2.39 -0.02 0.04 16 36 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 37 H 0.05 1.87 6.22 -2.39 -0.01 1.86 16 38 H 0.07 1.98 6.04 -2.39 -0.01 1.96 16 39 H 0.04 1.03 6.28 -2.39 -0.01 1.02 16 40 H 0.05 1.90 7.87 -2.38 -0.02 1.88 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.06 1.20 7.09 -2.39 -0.02 1.18 16 43 H 0.07 1.82 7.72 -2.39 -0.02 1.80 16 44 H 0.06 0.98 7.76 -2.39 -0.02 0.96 16 45 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 46 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 47 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 48 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 49 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 50 H 0.13 1.93 7.38 -2.91 -0.02 1.91 16 51 H 0.06 1.25 7.57 -2.39 -0.02 1.23 16 52 H 0.08 2.16 6.14 -2.39 -0.01 2.14 16 Total: -1.00 -70.41 392.56 0.36 -70.05 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.87 Total: 20.37 kcal Atomic # 6 Polarization: -45.00 SS G_CDS: 5.42 Total: -39.58 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -7.96 Total: -98.94 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -70.41 0.36 -70.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492426.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.723 kcal (2) G-P(sol) polarization free energy of solvation -70.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds