Wall clock time and date at job start Tue Mar 31 2020 11:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.46935 * 2 1 4 4 C 1.53000 * 109.46909 * 239.99966 * 2 1 3 5 5 C 1.53004 * 109.46988 * 174.99678 * 4 2 1 6 6 C 1.50699 * 109.46843 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00516 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99783 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99707 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99956 * 180.27458 * 8 6 5 11 11 H 1.48503 * 109.47407 * 269.72718 * 10 8 6 12 12 H 1.48505 * 109.47281 * 29.72474 * 10 8 6 13 13 H 1.48501 * 109.47274 * 149.72572 * 10 8 6 14 14 N 1.46903 * 109.47143 * 120.00113 * 2 1 3 15 15 C 1.46901 * 110.99925 * 274.99778 * 14 2 1 16 16 H 1.08997 * 110.28956 * 324.32913 * 15 14 2 17 17 C 1.54382 * 110.32060 * 86.45719 * 15 14 2 18 18 N 1.48561 * 104.59452 * 142.74818 * 17 15 14 19 19 C 1.46893 * 111.00197 * 200.95680 * 18 17 15 20 20 C 1.50701 * 109.47163 * 169.99869 * 19 18 17 21 21 C 1.38237 * 119.99912 * 269.72606 * 20 19 18 22 22 C 1.38237 * 119.99380 * 179.76707 * 21 20 19 23 23 C 1.38237 * 120.00544 * 0.50758 * 22 21 20 24 24 C 1.38234 * 119.99339 * 359.74632 * 23 22 21 25 25 C 1.38230 * 119.99954 * 90.00338 * 20 19 18 26 26 C 1.48562 * 104.22262 * 320.51546 * 18 17 15 27 27 C 1.54254 * 110.32362 * 202.09183 * 15 14 2 28 28 H 1.09002 * 110.32747 * 122.20944 * 27 15 14 29 29 C 1.53008 * 110.32523 * 0.02562 * 27 15 14 30 30 H 1.08998 * 109.46848 * 299.99657 * 1 2 3 31 31 H 1.08997 * 109.47518 * 59.99819 * 1 2 3 32 32 H 1.08999 * 109.46743 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46826 * 55.00026 * 4 2 1 34 34 H 1.08997 * 109.47123 * 294.99961 * 4 2 1 35 35 H 1.09001 * 109.46361 * 60.00532 * 5 4 2 36 36 H 1.08997 * 109.46991 * 300.00423 * 5 4 2 37 37 H 0.97005 * 119.99656 * 179.97438 * 9 8 6 38 38 H 1.00902 * 111.00041 * 38.95820 * 14 2 1 39 39 H 1.09001 * 110.40830 * 261.52631 * 17 15 14 40 40 H 1.08997 * 110.41150 * 23.84614 * 17 15 14 41 41 H 1.09001 * 109.47073 * 290.00204 * 19 18 17 42 42 H 1.09002 * 109.46761 * 49.99762 * 19 18 17 43 43 H 1.07998 * 120.00033 * 0.02562 * 21 20 19 44 44 H 1.08002 * 119.99370 * 180.23655 * 22 21 20 45 45 H 1.07998 * 120.00186 * 179.72412 * 23 22 21 46 46 H 1.07999 * 119.99625 * 179.97438 * 24 23 22 47 47 H 1.08002 * 120.00080 * 0.02562 * 25 20 19 48 48 H 1.09000 * 110.41243 * 158.25616 * 26 18 17 49 49 H 1.08998 * 110.40836 * 280.70679 * 26 18 17 50 50 H 1.09001 * 109.46631 * 59.99739 * 29 27 15 51 51 H 1.08997 * 109.47242 * 179.97438 * 29 27 15 52 52 H 1.08998 * 109.46808 * 300.00244 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0670 -1.3231 -2.5446 7 1 3.3686 -1.8037 -3.2137 8 6 5.4184 -1.3601 -2.8160 9 7 6.2690 -0.7762 -2.0004 10 14 6.0403 -2.2334 -4.3456 11 1 6.3247 -3.6548 -4.0230 12 1 5.0066 -2.1646 -5.4097 13 1 7.2839 -1.5751 -4.8203 14 7 2.0197 -0.6925 1.1994 15 6 2.0826 0.2226 2.3469 16 1 2.3757 1.2199 2.0193 17 6 0.7179 0.2742 3.0668 18 7 1.0591 0.3734 4.5093 19 6 -0.0670 -0.0588 5.3477 20 6 0.3896 -0.1798 6.7787 21 6 0.8903 -1.3809 7.2453 22 6 1.3136 -1.4904 8.5567 23 6 1.2264 -0.4020 9.4044 24 6 0.7208 0.7975 8.9392 25 6 0.3024 0.9086 7.6264 26 6 2.2235 -0.5348 4.6722 27 6 3.0730 -0.3096 3.4030 28 1 3.8532 0.4268 3.5954 29 6 3.6905 -1.6291 2.9352 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6053 -0.2617 -2.1370 34 1 1.7516 -1.7715 -1.2056 35 1 3.9994 -1.0728 -0.4260 36 1 3.8531 0.4370 -1.3574 37 1 7.2198 -0.8025 -2.1911 38 1 1.4496 -1.4980 1.4100 39 1 0.1531 1.1505 2.7486 40 1 0.1498 -0.6351 2.8704 41 1 -0.8704 0.6750 5.2834 42 1 -0.4294 -1.0258 4.9988 43 1 0.9547 -2.2324 6.5841 44 1 1.7083 -2.4277 8.9201 45 1 1.5529 -0.4889 10.4302 46 1 0.6523 1.6477 9.6016 47 1 -0.0934 1.8456 7.2633 48 1 2.7924 -0.2675 5.5627 49 1 1.8918 -1.5716 4.7287 50 1 4.2225 -1.4689 1.9974 51 1 4.3874 -1.9920 3.6906 52 1 2.9016 -2.3660 2.7842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493171.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:58 Heat of formation + Delta-G solvation = 19.007910 kcal Electronic energy + Delta-G solvation = -26743.059199 eV Core-core repulsion = 23320.515481 eV Total energy + Delta-G solvation = -3422.543719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.13354 -38.98471 -36.53450 -34.05008 -32.87038 -31.30438 -31.15262 -30.72264 -28.84405 -27.42022 -26.48124 -24.92995 -24.26240 -22.83625 -21.74700 -21.37778 -20.87581 -19.88772 -19.24547 -16.96579 -16.41251 -16.05806 -15.85246 -15.45028 -15.28872 -14.60390 -14.34455 -14.31555 -14.05462 -13.67345 -13.49118 -13.33871 -12.88107 -12.85368 -12.80971 -12.58104 -12.28464 -12.18784 -11.98805 -11.84891 -11.40252 -11.29954 -11.17714 -11.09722 -11.06768 -10.84489 -10.79526 -10.60514 -10.41304 -10.28344 -9.98931 -9.59920 -9.17302 -9.13434 -9.06796 -8.87110 -8.55661 -8.20976 -7.85993 -5.86624 -3.87454 1.09409 1.18296 3.38043 3.44203 3.47372 3.47851 4.01947 4.42886 4.54464 4.55567 4.60821 4.71787 4.77226 4.84759 4.96039 5.05281 5.19564 5.23201 5.27734 5.34538 5.41503 5.43422 5.48828 5.52569 5.55910 5.64171 5.70299 5.76333 5.80155 5.85023 5.89945 6.02023 6.07094 6.12812 6.21921 6.27719 6.28106 6.35885 6.38576 6.44920 6.55486 6.65002 6.75024 6.76673 6.85598 6.92082 6.99107 7.34132 7.57096 7.81713 7.87479 8.10794 8.26099 8.60070 9.21616 9.74947 11.24282 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023598 B = 0.002467 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.260484 B =11346.592960 C =12098.791359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.083 3.917 3 H 0.072 0.928 4 C -0.098 4.098 5 C 0.031 3.969 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.276 1.276 13 H -0.288 1.288 14 N -0.656 5.656 15 C 0.091 3.909 16 H 0.087 0.913 17 C 0.005 3.995 18 N -0.503 5.503 19 C 0.082 3.918 20 C -0.078 4.078 21 C -0.112 4.112 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.100 4.100 26 C 0.038 3.962 27 C -0.086 4.086 28 H 0.077 0.923 29 C -0.125 4.125 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.033 0.967 36 H 0.006 0.994 37 H 0.258 0.742 38 H 0.334 0.666 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.076 0.924 49 H 0.043 0.957 50 H 0.082 0.918 51 H 0.038 0.962 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.833 1.612 21.543 25.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.027 4.027 3 H 0.090 0.910 4 C -0.136 4.136 5 C -0.006 4.006 6 C -0.556 4.556 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.201 1.201 13 H -0.214 1.214 14 N -0.285 5.285 15 C -0.020 4.020 16 H 0.105 0.895 17 C -0.124 4.124 18 N -0.227 5.227 19 C -0.046 4.046 20 C -0.079 4.079 21 C -0.131 4.131 22 C -0.139 4.139 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.118 4.118 26 C -0.090 4.090 27 C -0.106 4.106 28 H 0.096 0.904 29 C -0.183 4.183 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.024 0.976 37 H 0.067 0.933 38 H 0.153 0.847 39 H 0.096 0.904 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.095 0.905 49 H 0.061 0.939 50 H 0.101 0.899 51 H 0.057 0.943 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.867 2.279 21.526 25.181 hybrid contribution -0.832 -1.202 -0.788 1.661 sum -13.699 1.076 20.738 24.877 Atomic orbital electron populations 1.22657 0.98762 1.01367 1.01402 1.21810 0.90834 0.98353 0.91662 0.90968 1.21626 1.00642 0.98266 0.93079 1.18988 0.88246 0.96438 0.96962 1.21354 0.91800 1.33965 1.08502 0.93210 1.24993 0.97168 0.95803 0.96463 1.69978 1.02112 1.44329 1.36963 0.86703 0.78272 0.79788 0.83830 1.20832 1.20090 1.21379 1.60715 1.56961 1.08288 1.02534 1.22374 0.92106 0.97028 0.90522 0.89502 1.24101 0.99143 1.00585 0.88609 1.65499 1.04883 1.48065 1.04206 1.21227 0.94016 0.99631 0.89694 1.19754 0.99262 0.93751 0.95105 1.21102 0.98819 0.97303 0.95841 1.21123 1.00121 0.98811 0.93843 1.21151 0.99868 0.93356 0.99702 1.21152 0.99310 0.97713 0.95862 1.21030 0.99377 0.98107 0.93313 1.23279 0.92210 0.94449 0.99045 1.21921 0.96997 0.99046 0.92630 0.90423 1.21546 0.99946 0.94910 1.01863 0.93431 0.92417 0.93037 0.93655 0.93621 0.94849 0.97552 0.93280 0.84715 0.90367 0.93835 0.89976 0.93924 0.86361 0.86149 0.86270 0.86159 0.85983 0.90526 0.93887 0.89904 0.94342 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 8.95 37.16 0.33 -2.05 16 2 C 0.08 1.34 2.59 -67.71 -0.18 1.16 16 3 H 0.07 1.24 7.46 -51.93 -0.39 0.85 16 4 C -0.10 -2.00 4.83 -26.73 -0.13 -2.13 16 5 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 6 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 7 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 10 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 N -0.66 -9.95 3.82 -98.30 -0.38 -10.32 16 15 C 0.09 1.24 3.34 -66.33 -0.22 1.01 16 16 H 0.09 1.29 7.49 -51.93 -0.39 0.90 16 17 C 0.01 0.06 4.53 -2.18 -0.01 0.05 16 18 N -0.50 -5.70 5.48 -231.41 -1.27 -6.97 16 19 C 0.08 0.80 5.22 -4.98 -0.03 0.78 16 20 C -0.08 -0.77 4.65 -104.62 -0.49 -1.25 16 21 C -0.11 -1.05 8.39 -39.58 -0.33 -1.38 16 22 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 23 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 24 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 25 C -0.10 -0.93 9.70 -39.59 -0.38 -1.31 16 26 C 0.04 0.44 4.50 -2.18 -0.01 0.43 16 27 C -0.09 -1.15 3.65 -89.23 -0.33 -1.48 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 C -0.12 -1.80 8.11 37.16 0.30 -1.50 16 30 H 0.05 0.55 5.86 -51.93 -0.30 0.25 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.33 4.71 7.36 -39.29 -0.29 4.42 16 39 H 0.08 0.88 7.38 -51.93 -0.38 0.50 16 40 H 0.04 0.49 7.28 -51.93 -0.38 0.11 16 41 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 42 H 0.04 0.41 7.82 -51.93 -0.41 0.00 16 43 H 0.12 1.03 7.41 -52.49 -0.39 0.64 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 46 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 48 H 0.08 0.93 7.74 -51.93 -0.40 0.53 16 49 H 0.04 0.49 6.83 -51.93 -0.35 0.13 16 50 H 0.08 1.49 7.84 -51.93 -0.41 1.09 16 51 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.05 0.65 7.43 -51.93 -0.39 0.27 16 LS Contribution 400.51 15.07 6.04 6.04 Total: -1.00 -30.39 400.51 -12.59 -42.97 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -9.49 Total: 2.74 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -3.21 Total: -24.94 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.91 Total: -43.88 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.39 -12.59 -42.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493171.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.982 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds