Wall clock time and date at job start Tue Mar 31 2020 11:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.46935 * 2 1 4 4 C 1.53000 * 109.46909 * 239.99966 * 2 1 3 5 5 C 1.53004 * 109.46988 * 174.99678 * 4 2 1 6 6 C 1.50699 * 109.46843 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00516 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99783 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99707 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99956 * 180.27458 * 8 6 5 11 11 H 1.48503 * 109.47407 * 269.72718 * 10 8 6 12 12 H 1.48505 * 109.47281 * 29.72474 * 10 8 6 13 13 H 1.48501 * 109.47274 * 149.72572 * 10 8 6 14 14 N 1.46903 * 109.47143 * 120.00113 * 2 1 3 15 15 C 1.46901 * 110.99925 * 274.99778 * 14 2 1 16 16 H 1.08997 * 110.28956 * 324.32913 * 15 14 2 17 17 C 1.54382 * 110.32060 * 86.45719 * 15 14 2 18 18 N 1.48561 * 104.59452 * 142.74818 * 17 15 14 19 19 C 1.46893 * 111.00197 * 200.95680 * 18 17 15 20 20 C 1.50701 * 109.47163 * 169.99869 * 19 18 17 21 21 C 1.38237 * 119.99912 * 269.72606 * 20 19 18 22 22 C 1.38237 * 119.99380 * 179.76707 * 21 20 19 23 23 C 1.38237 * 120.00544 * 0.50758 * 22 21 20 24 24 C 1.38234 * 119.99339 * 359.74632 * 23 22 21 25 25 C 1.38230 * 119.99954 * 90.00338 * 20 19 18 26 26 C 1.48562 * 104.22262 * 320.51546 * 18 17 15 27 27 C 1.54254 * 110.32362 * 202.09183 * 15 14 2 28 28 H 1.09002 * 110.32747 * 122.20944 * 27 15 14 29 29 C 1.53008 * 110.32523 * 0.02562 * 27 15 14 30 30 H 1.08998 * 109.46848 * 299.99657 * 1 2 3 31 31 H 1.08997 * 109.47518 * 59.99819 * 1 2 3 32 32 H 1.08999 * 109.46743 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46826 * 55.00026 * 4 2 1 34 34 H 1.08997 * 109.47123 * 294.99961 * 4 2 1 35 35 H 1.09001 * 109.46361 * 60.00532 * 5 4 2 36 36 H 1.08997 * 109.46991 * 300.00423 * 5 4 2 37 37 H 0.97005 * 119.99656 * 179.97438 * 9 8 6 38 38 H 1.00902 * 111.00041 * 38.95820 * 14 2 1 39 39 H 1.09001 * 110.40830 * 261.52631 * 17 15 14 40 40 H 1.08997 * 110.41150 * 23.84614 * 17 15 14 41 41 H 1.09001 * 109.47073 * 290.00204 * 19 18 17 42 42 H 1.09002 * 109.46761 * 49.99762 * 19 18 17 43 43 H 1.07998 * 120.00033 * 0.02562 * 21 20 19 44 44 H 1.08002 * 119.99370 * 180.23655 * 22 21 20 45 45 H 1.07998 * 120.00186 * 179.72412 * 23 22 21 46 46 H 1.07999 * 119.99625 * 179.97438 * 24 23 22 47 47 H 1.08002 * 120.00080 * 0.02562 * 25 20 19 48 48 H 1.09000 * 110.41243 * 158.25616 * 26 18 17 49 49 H 1.08998 * 110.40836 * 280.70679 * 26 18 17 50 50 H 1.09001 * 109.46631 * 59.99739 * 29 27 15 51 51 H 1.08997 * 109.47242 * 179.97438 * 29 27 15 52 52 H 1.08998 * 109.46808 * 300.00244 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0670 -1.3231 -2.5446 7 1 3.3686 -1.8037 -3.2137 8 6 5.4184 -1.3601 -2.8160 9 7 6.2690 -0.7762 -2.0004 10 14 6.0403 -2.2334 -4.3456 11 1 6.3247 -3.6548 -4.0230 12 1 5.0066 -2.1646 -5.4097 13 1 7.2839 -1.5751 -4.8203 14 7 2.0197 -0.6925 1.1994 15 6 2.0826 0.2226 2.3469 16 1 2.3757 1.2199 2.0193 17 6 0.7179 0.2742 3.0668 18 7 1.0591 0.3734 4.5093 19 6 -0.0670 -0.0588 5.3477 20 6 0.3896 -0.1798 6.7787 21 6 0.8903 -1.3809 7.2453 22 6 1.3136 -1.4904 8.5567 23 6 1.2264 -0.4020 9.4044 24 6 0.7208 0.7975 8.9392 25 6 0.3024 0.9086 7.6264 26 6 2.2235 -0.5348 4.6722 27 6 3.0730 -0.3096 3.4030 28 1 3.8532 0.4268 3.5954 29 6 3.6905 -1.6291 2.9352 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6053 -0.2617 -2.1370 34 1 1.7516 -1.7715 -1.2056 35 1 3.9994 -1.0728 -0.4260 36 1 3.8531 0.4370 -1.3574 37 1 7.2198 -0.8025 -2.1911 38 1 1.4496 -1.4980 1.4100 39 1 0.1531 1.1505 2.7486 40 1 0.1498 -0.6351 2.8704 41 1 -0.8704 0.6750 5.2834 42 1 -0.4294 -1.0258 4.9988 43 1 0.9547 -2.2324 6.5841 44 1 1.7083 -2.4277 8.9201 45 1 1.5529 -0.4889 10.4302 46 1 0.6523 1.6477 9.6016 47 1 -0.0934 1.8456 7.2633 48 1 2.7924 -0.2675 5.5627 49 1 1.8918 -1.5716 4.7287 50 1 4.2225 -1.4689 1.9974 51 1 4.3874 -1.9920 3.6906 52 1 2.9016 -2.3660 2.7842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172493171.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:57 Heat of formation + Delta-G solvation = 2.414550 kcal Electronic energy + Delta-G solvation = -26743.778741 eV Core-core repulsion = 23320.515481 eV Total energy + Delta-G solvation = -3423.263261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.02572 -39.81354 -37.77777 -35.42415 -34.61301 -32.39738 -32.11577 -31.75592 -30.31710 -28.36336 -27.51328 -26.82857 -25.24116 -23.50513 -23.17793 -22.57672 -21.69485 -21.39659 -20.38366 -18.35415 -17.62645 -17.41016 -16.78165 -16.48443 -16.22159 -16.16437 -15.51266 -15.43111 -15.04025 -14.82746 -14.47319 -14.31436 -14.20837 -13.99917 -13.95287 -13.64429 -13.55023 -13.41453 -13.16233 -13.00209 -12.84864 -12.83284 -12.60335 -12.33497 -12.28676 -11.97638 -11.94223 -11.81725 -11.75617 -11.49692 -11.46339 -11.37431 -11.13449 -10.87003 -10.45899 -9.79273 -9.77526 -9.39032 -9.06095 -8.11750 -6.21717 0.43834 0.53768 1.39996 1.41456 1.52108 2.44547 2.76547 3.12305 3.20415 3.45259 3.63328 3.66897 3.94728 3.98485 4.05535 4.14021 4.20068 4.27471 4.31857 4.35796 4.38737 4.47746 4.50572 4.60465 4.64638 4.68279 4.76292 4.79504 4.81177 4.86240 4.88246 4.95797 5.03870 5.08784 5.13290 5.14863 5.19298 5.24480 5.31906 5.40361 5.50235 5.55943 5.59577 5.63855 5.65560 5.71645 5.81298 5.93904 6.02087 6.08381 6.15116 6.35556 6.37885 6.66771 6.98674 7.46010 8.99244 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023598 B = 0.002467 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.260484 B =11346.592960 C =12098.791359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.092 3.908 3 H 0.057 0.943 4 C -0.088 4.088 5 C 0.040 3.960 6 C -0.541 4.541 7 H 0.054 0.946 8 C -0.001 4.001 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.273 1.273 12 H -0.265 1.265 13 H -0.283 1.283 14 N -0.671 5.671 15 C 0.093 3.907 16 H 0.069 0.931 17 C 0.018 3.982 18 N -0.510 5.510 19 C 0.085 3.915 20 C -0.092 4.092 21 C -0.123 4.123 22 C -0.130 4.130 23 C -0.128 4.128 24 C -0.129 4.129 25 C -0.112 4.112 26 C 0.053 3.947 27 C -0.087 4.087 28 H 0.064 0.936 29 C -0.114 4.114 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.008 0.992 36 H -0.027 1.027 37 H 0.260 0.740 38 H 0.342 0.658 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.122 0.878 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.128 0.872 48 H 0.073 0.927 49 H 0.050 0.950 50 H 0.039 0.961 51 H 0.048 0.952 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.477 0.884 22.251 27.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 H 0.075 0.925 4 C -0.126 4.126 5 C 0.003 3.997 6 C -0.579 4.579 7 H 0.072 0.928 8 C -0.199 4.199 9 N -0.572 5.572 10 Si 0.784 3.216 11 H -0.199 1.199 12 H -0.189 1.189 13 H -0.209 1.209 14 N -0.301 5.301 15 C -0.018 4.018 16 H 0.087 0.913 17 C -0.112 4.112 18 N -0.234 5.234 19 C -0.042 4.042 20 C -0.092 4.092 21 C -0.142 4.142 22 C -0.148 4.148 23 C -0.146 4.146 24 C -0.147 4.147 25 C -0.131 4.131 26 C -0.075 4.075 27 C -0.107 4.107 28 H 0.083 0.917 29 C -0.172 4.172 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.026 0.974 36 H -0.009 1.009 37 H 0.069 0.931 38 H 0.162 0.838 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.140 0.860 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.156 0.844 47 H 0.146 0.854 48 H 0.091 0.909 49 H 0.069 0.931 50 H 0.058 0.942 51 H 0.067 0.933 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.533 1.549 22.239 26.612 hybrid contribution -0.265 -0.955 -0.947 1.371 sum -14.799 0.594 21.292 25.937 Atomic orbital electron populations 1.22499 0.95473 1.02367 1.02577 1.21547 0.93263 0.96745 0.90229 0.92471 1.21451 0.96541 0.99023 0.95551 1.18810 0.92175 0.93607 0.95070 1.21818 0.92400 1.34223 1.09458 0.92806 1.25934 0.97473 0.96553 0.99913 1.70125 1.02475 1.45616 1.39006 0.85549 0.77772 0.78635 0.79672 1.19881 1.18912 1.20909 1.60575 1.57696 1.09003 1.02864 1.22272 0.93731 0.95676 0.90116 0.91306 1.23935 0.97486 1.01351 0.88434 1.65487 1.05417 1.48227 1.04248 1.21238 0.93447 1.00075 0.89454 1.19826 1.00018 0.94190 0.95171 1.21239 0.99148 0.97378 0.96421 1.21394 0.99919 0.99732 0.93710 1.21465 0.99331 0.93120 1.00696 1.21436 0.98853 0.98534 0.95887 1.21218 0.99723 0.98313 0.93835 1.23078 0.92033 0.94942 0.97464 1.21880 0.97039 0.98002 0.93745 0.91711 1.21393 0.99985 0.95838 0.99962 0.91480 0.92032 0.92078 0.93543 0.93438 0.97366 1.00877 0.93122 0.83835 0.89677 0.92839 0.89119 0.93453 0.86039 0.84630 0.84292 0.84389 0.85424 0.90887 0.93149 0.94151 0.93335 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.95 71.98 0.64 -3.44 16 2 C 0.09 2.97 2.59 44.92 0.12 3.09 16 3 H 0.06 2.02 7.46 -2.39 -0.02 2.00 16 4 C -0.09 -3.61 4.83 30.60 0.15 -3.46 16 5 C 0.04 2.19 4.86 29.85 0.15 2.34 16 6 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 7 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 8 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 9 N -0.93 -58.55 13.29 21.45 0.28 -58.27 16 10 Si 0.96 45.64 29.54 68.60 2.03 47.67 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 12 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 13 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 14 N -0.67 -20.55 3.82 -464.90 -1.78 -22.32 16 15 C 0.09 2.54 3.34 45.81 0.15 2.69 16 16 H 0.07 2.12 7.49 -2.39 -0.02 2.10 16 17 C 0.02 0.37 4.53 86.45 0.39 0.76 16 18 N -0.51 -10.82 5.48 -886.04 -4.86 -15.67 16 19 C 0.09 1.51 5.22 85.56 0.45 1.95 16 20 C -0.09 -1.66 4.65 -19.87 -0.09 -1.75 16 21 C -0.12 -2.14 8.39 22.27 0.19 -1.95 16 22 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 23 C -0.13 -1.86 10.05 22.27 0.22 -1.63 16 24 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 25 C -0.11 -1.93 9.70 22.27 0.22 -1.71 16 26 C 0.05 1.18 4.50 86.45 0.39 1.57 16 27 C -0.09 -2.36 3.65 -9.90 -0.04 -2.40 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 C -0.11 -3.39 8.11 71.98 0.58 -2.80 16 30 H 0.07 1.37 5.86 -2.39 -0.01 1.35 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 33 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.01 0.47 7.75 -2.39 -0.02 0.45 16 36 H -0.03 -1.63 8.14 -2.39 -0.02 -1.65 16 37 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 38 H 0.34 9.36 7.36 -89.69 -0.66 8.70 16 39 H 0.08 1.73 7.38 -2.39 -0.02 1.71 16 40 H 0.05 1.06 7.28 -2.39 -0.02 1.04 16 41 H 0.09 1.45 8.09 -2.39 -0.02 1.43 16 42 H 0.05 0.80 7.82 -2.39 -0.02 0.78 16 43 H 0.12 1.94 7.41 -2.91 -0.02 1.92 16 44 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 45 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 46 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 47 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 48 H 0.07 1.71 7.74 -2.39 -0.02 1.69 16 49 H 0.05 1.06 6.83 -2.39 -0.02 1.05 16 50 H 0.04 1.54 7.84 -2.39 -0.02 1.52 16 51 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.05 1.52 7.43 -2.39 -0.02 1.51 16 Total: -1.00 -67.01 400.51 0.54 -66.47 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.20 Total: 23.56 kcal Atomic # 6 Polarization: -46.09 SS G_CDS: 4.66 Total: -41.43 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -6.35 Total: -96.26 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -67.01 0.54 -66.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493171.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.887 kcal (2) G-P(sol) polarization free energy of solvation -67.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds