Wall clock time and date at job start Tue Mar 31 2020 11:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46879 * 2 1 4 4 C 1.53001 * 109.47107 * 119.99660 * 2 1 3 5 5 C 1.53002 * 109.47067 * 184.99808 * 4 2 1 6 6 C 1.50691 * 109.47175 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00110 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00393 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99190 * 0.02562 * 8 6 5 10 10 Si 1.86790 * 120.00410 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47217 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47383 * 120.00451 * 10 8 6 13 13 H 1.48500 * 109.47060 * 240.00026 * 10 8 6 14 14 N 1.46899 * 109.46790 * 239.99650 * 2 1 3 15 15 C 1.46906 * 110.99779 * 85.00278 * 14 2 1 16 16 H 1.08997 * 110.36548 * 327.17345 * 15 14 2 17 17 C 1.54609 * 110.40010 * 89.45051 * 15 14 2 18 18 N 1.48565 * 104.63084 * 142.65237 * 17 15 14 19 19 C 1.46905 * 110.99589 * 200.99622 * 18 17 15 20 20 C 1.50705 * 109.46839 * 185.29131 * 19 18 17 21 21 C 1.38234 * 119.99592 * 269.72457 * 20 19 18 22 22 C 1.38243 * 119.99379 * 179.76672 * 21 20 19 23 23 C 1.38234 * 119.99924 * 0.51008 * 22 21 20 24 24 C 1.38232 * 120.00258 * 359.74568 * 23 22 21 25 25 C 1.38234 * 119.99850 * 90.00138 * 20 19 18 26 26 C 1.48558 * 104.22325 * 320.54815 * 18 17 15 27 27 C 1.54262 * 110.32119 * 204.99914 * 15 14 2 28 28 H 1.09002 * 110.32521 * 122.20528 * 27 15 14 29 29 C 1.53001 * 110.32554 * 0.09791 * 27 15 14 30 30 H 1.08989 * 109.47381 * 60.00013 * 1 2 3 31 31 H 1.09003 * 109.47197 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46826 * 299.99744 * 1 2 3 33 33 H 1.08996 * 109.47098 * 305.00093 * 4 2 1 34 34 H 1.09007 * 109.46983 * 65.00391 * 4 2 1 35 35 H 1.09005 * 109.47030 * 300.00537 * 5 4 2 36 36 H 1.08996 * 109.46932 * 59.99982 * 5 4 2 37 37 H 0.97008 * 119.99843 * 179.97438 * 9 8 6 38 38 H 1.00904 * 110.99933 * 208.94791 * 14 2 1 39 39 H 1.08992 * 110.36274 * 23.87609 * 17 15 14 40 40 H 1.09003 * 110.52324 * 261.50589 * 17 15 14 41 41 H 1.08995 * 109.47198 * 305.29150 * 19 18 17 42 42 H 1.09002 * 109.47172 * 65.29463 * 19 18 17 43 43 H 1.07990 * 120.00422 * 0.02562 * 21 20 19 44 44 H 1.07994 * 119.99778 * 180.22948 * 22 21 20 45 45 H 1.08000 * 120.00014 * 179.72293 * 23 22 21 46 46 H 1.07998 * 120.00553 * 179.97438 * 24 23 22 47 47 H 1.07999 * 120.00122 * 0.02562 * 25 20 19 48 48 H 1.09001 * 110.41527 * 280.70786 * 26 18 17 49 49 H 1.09001 * 110.41428 * 158.25937 * 26 18 17 50 50 H 1.09004 * 109.47193 * 301.43023 * 29 27 15 51 51 H 1.09001 * 109.46763 * 61.42702 * 29 27 15 52 52 H 1.08999 * 109.47206 * 181.42407 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3137 6 6 4.0673 -1.3241 2.5438 7 1 3.3689 -1.8051 3.2126 8 6 5.4186 -1.3613 2.8150 9 7 6.2690 -0.7759 2.0003 10 14 6.0414 -2.2430 4.3394 11 1 4.8916 -2.8152 5.0848 12 1 6.9632 -3.3356 3.9374 13 1 6.7647 -1.2796 5.2077 14 7 2.0196 -0.6926 -1.1994 15 6 2.0824 0.2225 -2.3469 16 1 1.2859 0.9640 -2.2848 17 6 3.4617 0.9185 -2.4064 18 7 3.7743 1.0087 -3.8560 19 6 5.2173 1.1781 -4.0737 20 6 5.4816 1.3956 -5.5414 21 6 5.7239 0.3142 -6.3676 22 6 5.9616 0.5134 -7.7148 23 6 5.9675 1.7947 -8.2336 24 6 5.7305 2.8764 -7.4062 25 6 5.4875 2.6769 -6.0601 26 6 3.3001 -0.2843 -4.4128 27 6 1.9776 -0.5669 -3.6681 28 1 1.1298 -0.2129 -4.2545 29 6 1.8376 -2.0636 -3.3831 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6054 -0.2616 2.1370 34 1 1.7517 -1.7715 1.2056 35 1 3.9995 -1.0728 0.4259 36 1 3.8532 0.4370 1.3573 37 1 7.2198 -0.8017 2.1913 38 1 2.9173 -1.1205 -1.0287 39 1 4.2121 0.3178 -1.8924 40 1 3.4066 1.9144 -1.9667 41 1 5.5712 2.0406 -3.5090 42 1 5.7427 0.2838 -3.7385 43 1 5.7233 -0.6865 -5.9616 44 1 6.1472 -0.3317 -8.3611 45 1 6.1576 1.9506 -9.2852 46 1 5.7354 3.8775 -7.8114 47 1 5.3031 3.5221 -5.4136 48 1 4.0252 -1.0732 -4.2128 49 1 3.1211 -0.1940 -5.4842 50 1 2.6976 -2.4059 -2.8074 51 1 0.9252 -2.2413 -2.8138 52 1 1.7902 -2.6100 -4.3251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493172.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:01 Heat of formation + Delta-G solvation = 14.209392 kcal Electronic energy + Delta-G solvation = -26901.166445 eV Core-core repulsion = 23478.414647 eV Total energy + Delta-G solvation = -3422.751798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.90428 -38.88501 -36.52774 -34.02561 -32.89315 -31.19096 -31.01665 -30.68115 -29.19357 -27.22865 -26.34798 -25.10702 -24.16499 -22.66352 -21.68053 -21.40732 -20.77025 -19.62199 -19.22154 -16.86538 -16.53636 -16.09500 -15.64146 -15.35684 -15.28445 -14.63201 -14.53355 -14.21413 -13.95995 -13.53481 -13.38342 -13.36663 -12.85625 -12.68622 -12.65736 -12.48242 -12.33954 -12.10699 -11.90576 -11.59412 -11.51185 -11.35244 -11.15073 -11.03942 -10.97262 -10.88919 -10.79766 -10.73586 -10.47263 -10.27673 -10.10207 -9.78587 -9.29242 -9.04244 -9.00777 -8.91026 -8.42673 -8.38203 -7.92304 -6.04262 -4.05859 1.24434 1.31703 3.28339 3.36262 3.40469 3.61776 4.16825 4.43234 4.58804 4.64912 4.75263 4.81499 4.89260 4.94514 5.04067 5.23709 5.27051 5.31794 5.41199 5.42225 5.53770 5.56631 5.59514 5.61706 5.76253 5.76875 5.83066 5.88794 5.91777 5.92864 5.97748 6.01819 6.09216 6.22431 6.28843 6.35514 6.36513 6.40199 6.42881 6.51930 6.54187 6.55187 6.65612 6.86721 6.90865 6.92071 7.04412 7.07094 7.55064 7.59141 7.77577 7.89026 7.96225 8.39555 9.00968 9.58575 11.06854 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012330 B = 0.003146 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.262233 B = 8899.183533 C =10335.103459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.081 3.919 3 H 0.037 0.963 4 C -0.115 4.115 5 C 0.023 3.977 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.673 5.673 15 C 0.090 3.910 16 H 0.082 0.918 17 C 0.004 3.996 18 N -0.502 5.502 19 C 0.079 3.921 20 C -0.069 4.069 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.100 4.100 26 C 0.036 3.964 27 C -0.086 4.086 28 H 0.073 0.927 29 C -0.122 4.122 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.013 0.987 36 H 0.011 0.989 37 H 0.259 0.741 38 H 0.352 0.648 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.044 0.956 49 H 0.075 0.925 50 H 0.054 0.946 51 H 0.067 0.933 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.743 4.343 -18.728 19.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.056 0.944 4 C -0.153 4.153 5 C -0.014 4.014 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.718 3.282 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 N -0.307 5.307 15 C -0.021 4.021 16 H 0.100 0.900 17 C -0.126 4.126 18 N -0.226 5.226 19 C -0.049 4.049 20 C -0.069 4.069 21 C -0.131 4.131 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.141 4.141 25 C -0.119 4.119 26 C -0.092 4.092 27 C -0.105 4.105 28 H 0.092 0.908 29 C -0.180 4.180 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.030 0.970 37 H 0.069 0.931 38 H 0.174 0.826 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.140 0.860 48 H 0.063 0.937 49 H 0.094 0.906 50 H 0.073 0.927 51 H 0.086 0.914 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.428 4.576 -19.127 20.402 hybrid contribution 1.839 -0.492 1.405 2.366 sum -3.589 4.084 -17.723 18.538 Atomic orbital electron populations 1.21790 0.95786 1.01628 1.00112 1.21611 0.94446 0.96140 0.90606 0.94443 1.21830 0.99604 0.99431 0.94423 1.19105 0.88810 0.96745 0.96767 1.21278 0.91925 1.34059 1.08339 0.92651 1.25018 0.97108 0.95622 0.96688 1.69966 1.02287 1.44222 1.37026 0.86559 0.78865 0.79490 0.83245 1.19730 1.21039 1.21058 1.60836 1.34463 1.31364 1.04067 1.22323 0.95306 0.93145 0.91361 0.90013 1.23983 0.98140 1.01712 0.88734 1.65408 1.13457 1.32274 1.11415 1.21236 0.89399 1.01959 0.92327 1.19767 0.98502 0.93342 0.95315 1.21094 0.99813 0.98545 0.93681 1.21100 1.00567 0.97077 0.95277 1.21113 1.00801 0.92878 0.99584 1.21132 1.00316 0.98802 0.93852 1.21043 0.98897 0.96679 0.95245 1.23269 0.96258 0.90165 0.99553 1.21904 0.96732 0.96759 0.95146 0.90838 1.21508 1.03227 0.93565 0.99673 0.93782 0.92452 0.93163 0.92805 0.92527 0.96891 0.97025 0.93139 0.82568 0.92640 0.90326 0.89807 0.93342 0.86359 0.86287 0.86416 0.86267 0.86025 0.93733 0.90630 0.92663 0.91408 0.94356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.40 37.16 0.35 -1.58 16 2 C 0.08 1.35 2.51 -67.71 -0.17 1.18 16 3 H 0.04 0.65 7.84 -51.93 -0.41 0.25 16 4 C -0.11 -2.30 4.74 -26.73 -0.13 -2.43 16 5 C 0.02 0.57 4.80 -27.89 -0.13 0.43 16 6 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 7 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 10 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 N -0.67 -10.57 4.36 -98.16 -0.43 -11.00 16 15 C 0.09 1.26 3.12 -66.20 -0.21 1.06 16 16 H 0.08 1.15 7.20 -51.93 -0.37 0.78 16 17 C 0.00 0.06 6.14 -2.06 -0.01 0.04 16 18 N -0.50 -6.71 5.36 -231.25 -1.24 -7.95 16 19 C 0.08 1.01 4.97 -4.97 -0.02 0.99 16 20 C -0.07 -0.82 5.09 -104.62 -0.53 -1.35 16 21 C -0.11 -1.25 8.76 -39.58 -0.35 -1.60 16 22 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 23 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 24 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 25 C -0.10 -1.11 9.70 -39.58 -0.38 -1.49 16 26 C 0.04 0.45 5.03 -2.18 -0.01 0.43 16 27 C -0.09 -1.08 3.65 -89.23 -0.33 -1.40 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 C -0.12 -1.52 8.10 37.16 0.30 -1.22 16 30 H 0.04 0.58 7.49 -51.94 -0.39 0.19 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.01 0.33 6.43 -51.93 -0.33 0.00 16 36 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.35 6.29 5.42 -39.29 -0.21 6.08 16 39 H 0.06 0.95 7.41 -51.93 -0.38 0.56 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 42 H 0.05 0.66 7.82 -51.93 -0.41 0.25 16 43 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 48 H 0.04 0.58 7.53 -51.93 -0.39 0.19 16 49 H 0.08 0.92 7.83 -51.93 -0.41 0.51 16 50 H 0.05 0.76 7.47 -51.93 -0.39 0.38 16 51 H 0.07 0.89 7.90 -51.93 -0.41 0.48 16 52 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 404.45 15.07 6.10 6.10 Total: -1.00 -28.69 404.45 -12.65 -41.33 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -9.56 Total: 5.57 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -3.23 Total: -24.94 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -0.93 Total: -44.58 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -28.69 -12.65 -41.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493172.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.541 kcal (2) G-P(sol) polarization free energy of solvation -28.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds