Wall clock time and date at job start Tue Mar 31 2020 11:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46879 * 2 1 4 4 C 1.53001 * 109.47107 * 119.99660 * 2 1 3 5 5 C 1.53002 * 109.47067 * 184.99808 * 4 2 1 6 6 C 1.50691 * 109.47175 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00110 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00393 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99190 * 0.02562 * 8 6 5 10 10 Si 1.86790 * 120.00410 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47217 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47383 * 120.00451 * 10 8 6 13 13 H 1.48500 * 109.47060 * 240.00026 * 10 8 6 14 14 N 1.46899 * 109.46790 * 239.99650 * 2 1 3 15 15 C 1.46906 * 110.99779 * 85.00278 * 14 2 1 16 16 H 1.08997 * 110.36548 * 327.17345 * 15 14 2 17 17 C 1.54609 * 110.40010 * 89.45051 * 15 14 2 18 18 N 1.48565 * 104.63084 * 142.65237 * 17 15 14 19 19 C 1.46905 * 110.99589 * 200.99622 * 18 17 15 20 20 C 1.50705 * 109.46839 * 185.29131 * 19 18 17 21 21 C 1.38234 * 119.99592 * 269.72457 * 20 19 18 22 22 C 1.38243 * 119.99379 * 179.76672 * 21 20 19 23 23 C 1.38234 * 119.99924 * 0.51008 * 22 21 20 24 24 C 1.38232 * 120.00258 * 359.74568 * 23 22 21 25 25 C 1.38234 * 119.99850 * 90.00138 * 20 19 18 26 26 C 1.48558 * 104.22325 * 320.54815 * 18 17 15 27 27 C 1.54262 * 110.32119 * 204.99914 * 15 14 2 28 28 H 1.09002 * 110.32521 * 122.20528 * 27 15 14 29 29 C 1.53001 * 110.32554 * 0.09791 * 27 15 14 30 30 H 1.08989 * 109.47381 * 60.00013 * 1 2 3 31 31 H 1.09003 * 109.47197 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46826 * 299.99744 * 1 2 3 33 33 H 1.08996 * 109.47098 * 305.00093 * 4 2 1 34 34 H 1.09007 * 109.46983 * 65.00391 * 4 2 1 35 35 H 1.09005 * 109.47030 * 300.00537 * 5 4 2 36 36 H 1.08996 * 109.46932 * 59.99982 * 5 4 2 37 37 H 0.97008 * 119.99843 * 179.97438 * 9 8 6 38 38 H 1.00904 * 110.99933 * 208.94791 * 14 2 1 39 39 H 1.08992 * 110.36274 * 23.87609 * 17 15 14 40 40 H 1.09003 * 110.52324 * 261.50589 * 17 15 14 41 41 H 1.08995 * 109.47198 * 305.29150 * 19 18 17 42 42 H 1.09002 * 109.47172 * 65.29463 * 19 18 17 43 43 H 1.07990 * 120.00422 * 0.02562 * 21 20 19 44 44 H 1.07994 * 119.99778 * 180.22948 * 22 21 20 45 45 H 1.08000 * 120.00014 * 179.72293 * 23 22 21 46 46 H 1.07998 * 120.00553 * 179.97438 * 24 23 22 47 47 H 1.07999 * 120.00122 * 0.02562 * 25 20 19 48 48 H 1.09001 * 110.41527 * 280.70786 * 26 18 17 49 49 H 1.09001 * 110.41428 * 158.25937 * 26 18 17 50 50 H 1.09004 * 109.47193 * 301.43023 * 29 27 15 51 51 H 1.09001 * 109.46763 * 61.42702 * 29 27 15 52 52 H 1.08999 * 109.47206 * 181.42407 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3137 6 6 4.0673 -1.3241 2.5438 7 1 3.3689 -1.8051 3.2126 8 6 5.4186 -1.3613 2.8150 9 7 6.2690 -0.7759 2.0003 10 14 6.0414 -2.2430 4.3394 11 1 4.8916 -2.8152 5.0848 12 1 6.9632 -3.3356 3.9374 13 1 6.7647 -1.2796 5.2077 14 7 2.0196 -0.6926 -1.1994 15 6 2.0824 0.2225 -2.3469 16 1 1.2859 0.9640 -2.2848 17 6 3.4617 0.9185 -2.4064 18 7 3.7743 1.0087 -3.8560 19 6 5.2173 1.1781 -4.0737 20 6 5.4816 1.3956 -5.5414 21 6 5.7239 0.3142 -6.3676 22 6 5.9616 0.5134 -7.7148 23 6 5.9675 1.7947 -8.2336 24 6 5.7305 2.8764 -7.4062 25 6 5.4875 2.6769 -6.0601 26 6 3.3001 -0.2843 -4.4128 27 6 1.9776 -0.5669 -3.6681 28 1 1.1298 -0.2129 -4.2545 29 6 1.8376 -2.0636 -3.3831 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6054 -0.2616 2.1370 34 1 1.7517 -1.7715 1.2056 35 1 3.9995 -1.0728 0.4259 36 1 3.8532 0.4370 1.3573 37 1 7.2198 -0.8017 2.1913 38 1 2.9173 -1.1205 -1.0287 39 1 4.2121 0.3178 -1.8924 40 1 3.4066 1.9144 -1.9667 41 1 5.5712 2.0406 -3.5090 42 1 5.7427 0.2838 -3.7385 43 1 5.7233 -0.6865 -5.9616 44 1 6.1472 -0.3317 -8.3611 45 1 6.1576 1.9506 -9.2852 46 1 5.7354 3.8775 -7.8114 47 1 5.3031 3.5221 -5.4136 48 1 4.0252 -1.0732 -4.2128 49 1 3.1211 -0.1940 -5.4842 50 1 2.6976 -2.4059 -2.8074 51 1 0.9252 -2.2413 -2.8138 52 1 1.7902 -2.6100 -4.3251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172493172.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:00 Heat of formation + Delta-G solvation = -0.293992 kcal Electronic energy + Delta-G solvation = -26901.795359 eV Core-core repulsion = 23478.414647 eV Total energy + Delta-G solvation = -3423.380712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95158 -39.83434 -37.89155 -35.46401 -34.60881 -32.26563 -32.13880 -31.76401 -30.71910 -28.32285 -27.46310 -26.95577 -25.26604 -23.46491 -23.31121 -22.59882 -21.76198 -21.13139 -20.35112 -18.54500 -17.67337 -17.40841 -16.76502 -16.56755 -16.42208 -16.20910 -15.69867 -15.51171 -15.06922 -14.71880 -14.53944 -14.31997 -14.24317 -14.13300 -13.96981 -13.65988 -13.41161 -13.29809 -13.18005 -13.13791 -12.89594 -12.80498 -12.59611 -12.37974 -12.31995 -12.07707 -11.97036 -11.84101 -11.79692 -11.64863 -11.46253 -11.38557 -11.21789 -10.92518 -10.56702 -9.84380 -9.78269 -9.49438 -9.23359 -8.22175 -6.32121 0.42814 0.52301 1.36805 1.37755 1.50528 2.38685 2.72703 3.08466 3.11705 3.39643 3.59387 3.67437 3.90413 3.95059 4.09539 4.13439 4.18287 4.25790 4.27302 4.32700 4.35771 4.48458 4.50132 4.54647 4.63564 4.67953 4.74161 4.76767 4.78908 4.84491 4.85311 4.92803 5.02787 5.07790 5.10489 5.13066 5.17600 5.22616 5.24702 5.37880 5.46679 5.53807 5.55210 5.59600 5.63373 5.67331 5.71958 5.78761 5.83277 5.93740 6.13590 6.24277 6.30328 6.43710 6.84545 7.36974 8.88932 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012330 B = 0.003146 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.262233 B = 8899.183533 C =10335.103459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.087 3.913 3 H 0.027 0.973 4 C -0.102 4.102 5 C 0.033 3.967 6 C -0.540 4.540 7 H 0.057 0.943 8 C 0.002 3.998 9 N -0.930 5.930 10 Si 0.960 3.040 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.279 1.279 14 N -0.667 5.667 15 C 0.092 3.908 16 H 0.090 0.910 17 C 0.009 3.991 18 N -0.498 5.498 19 C 0.082 3.918 20 C -0.085 4.085 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.114 4.114 26 C 0.041 3.959 27 C -0.079 4.079 28 H 0.090 0.910 29 C -0.115 4.115 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.055 0.945 35 H -0.004 1.004 36 H -0.018 1.018 37 H 0.262 0.738 38 H 0.337 0.663 39 H 0.023 0.977 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.033 0.967 43 H 0.118 0.882 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.142 0.858 47 H 0.123 0.877 48 H 0.036 0.964 49 H 0.086 0.914 50 H 0.034 0.966 51 H 0.063 0.937 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.855 4.139 -20.109 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.023 4.023 3 H 0.045 0.955 4 C -0.140 4.140 5 C -0.005 4.005 6 C -0.578 4.578 7 H 0.075 0.925 8 C -0.196 4.196 9 N -0.570 5.570 10 Si 0.785 3.215 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.205 1.205 14 N -0.299 5.299 15 C -0.019 4.019 16 H 0.108 0.892 17 C -0.121 4.121 18 N -0.222 5.222 19 C -0.046 4.046 20 C -0.086 4.086 21 C -0.144 4.144 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.133 4.133 26 C -0.087 4.087 27 C -0.099 4.099 28 H 0.108 0.892 29 C -0.173 4.173 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.014 0.986 36 H 0.000 1.000 37 H 0.070 0.930 38 H 0.157 0.843 39 H 0.041 0.959 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.051 0.949 43 H 0.136 0.864 44 H 0.158 0.842 45 H 0.163 0.837 46 H 0.160 0.840 47 H 0.141 0.859 48 H 0.054 0.946 49 H 0.104 0.896 50 H 0.053 0.947 51 H 0.082 0.918 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.563 4.375 -20.514 21.978 hybrid contribution 2.237 -0.392 1.778 2.884 sum -4.327 3.983 -18.737 19.638 Atomic orbital electron populations 1.21697 0.93092 1.02159 1.01405 1.21540 0.96385 0.94932 0.89430 0.95517 1.21651 0.96079 0.99864 0.96430 1.18948 0.92123 0.94222 0.95172 1.21719 0.92455 1.34324 1.09323 0.92465 1.25921 0.97413 0.96368 0.99923 1.70096 1.02630 1.45418 1.38896 0.85466 0.78425 0.78303 0.79283 1.18674 1.20448 1.20506 1.60942 1.33325 1.31489 1.04181 1.22385 0.94754 0.93208 0.91540 0.89219 1.23851 0.97955 1.00740 0.89526 1.65434 1.13872 1.32779 1.10076 1.21176 0.88893 1.00918 0.93626 1.19704 1.00155 0.94269 0.94427 1.21193 1.00409 0.98293 0.94478 1.21398 0.99784 0.98281 0.94850 1.21487 0.99498 0.92403 1.00924 1.21435 0.99439 1.00242 0.93214 1.21183 0.99494 0.96343 0.96255 1.23249 0.96015 0.89395 1.00018 1.21899 0.97180 0.96627 0.94157 0.89192 1.21429 1.02046 0.93569 1.00228 0.92187 0.92251 0.92201 0.92622 0.92643 0.98589 0.99979 0.92972 0.84282 0.95850 0.91025 0.90500 0.94856 0.86438 0.84159 0.83705 0.84038 0.85888 0.94576 0.89552 0.94659 0.91755 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.40 71.98 0.68 -2.68 16 2 C 0.09 2.89 2.51 44.92 0.11 3.00 16 3 H 0.03 0.95 7.84 -2.39 -0.02 0.93 16 4 C -0.10 -4.17 4.74 30.60 0.15 -4.02 16 5 C 0.03 1.68 4.80 29.85 0.14 1.83 16 6 C -0.54 -30.73 9.11 25.60 0.23 -30.50 16 7 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 8 C 0.00 0.09 5.46 84.66 0.46 0.55 16 9 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 10 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 11 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 14 N -0.67 -21.32 4.36 -464.48 -2.02 -23.34 16 15 C 0.09 2.59 3.12 45.89 0.14 2.74 16 16 H 0.09 2.42 7.20 -2.39 -0.02 2.40 16 17 C 0.01 0.29 6.14 86.53 0.53 0.82 16 18 N -0.50 -13.74 5.36 -885.53 -4.75 -18.48 16 19 C 0.08 2.24 4.97 85.56 0.42 2.67 16 20 C -0.09 -2.05 5.09 -19.86 -0.10 -2.15 16 21 C -0.13 -2.73 8.76 22.27 0.19 -2.54 16 22 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 23 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 24 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 25 C -0.11 -2.49 9.70 22.27 0.22 -2.27 16 26 C 0.04 1.02 5.03 86.45 0.43 1.46 16 27 C -0.08 -1.91 3.65 -9.89 -0.04 -1.95 16 28 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 29 C -0.11 -2.78 8.10 71.98 0.58 -2.19 16 30 H 0.06 1.43 7.49 -2.39 -0.02 1.41 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.00 -0.22 6.43 -2.38 -0.02 -0.24 16 36 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 37 H 0.26 14.95 8.31 -92.70 -0.77 14.17 16 38 H 0.34 12.70 5.42 -89.69 -0.49 12.22 16 39 H 0.02 0.87 7.41 -2.39 -0.02 0.86 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.08 2.15 8.07 -2.39 -0.02 2.13 16 42 H 0.03 0.99 7.82 -2.39 -0.02 0.97 16 43 H 0.12 2.48 8.06 -2.92 -0.02 2.46 16 44 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 45 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 46 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 47 H 0.12 2.53 8.06 -2.91 -0.02 2.51 16 48 H 0.04 0.96 7.53 -2.39 -0.02 0.95 16 49 H 0.09 2.00 7.83 -2.39 -0.02 1.98 16 50 H 0.03 0.98 7.47 -2.38 -0.02 0.97 16 51 H 0.06 1.61 7.90 -2.39 -0.02 1.59 16 52 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -62.67 404.45 0.74 -61.93 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.37 Total: 30.48 kcal Atomic # 6 Polarization: -45.92 SS G_CDS: 4.84 Total: -41.09 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -6.49 Total: -97.91 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -62.67 0.74 -61.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493172.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.635 kcal (2) G-P(sol) polarization free energy of solvation -62.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds