Wall clock time and date at job start Tue Mar 31 2020 10:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38313 * 119.96294 * 2 1 4 4 C 1.38266 * 120.14671 * 179.72556 * 3 2 1 5 5 C 1.38121 * 120.07700 * 0.55419 * 4 3 2 6 6 C 1.50703 * 120.03905 * 179.74784 * 5 4 3 7 7 C 1.38894 * 119.92393 * 359.46675 * 5 4 3 8 8 N 1.39675 * 120.07227 * 180.23121 * 7 5 4 9 9 C 1.46954 * 110.99867 * 243.79726 * 8 7 5 10 10 C 1.53052 * 109.36377 * 176.81573 * 9 8 7 11 11 N 1.46957 * 109.36668 * 58.40257 * 10 9 8 12 12 C 1.46890 * 111.00330 * 176.81085 * 11 10 9 13 13 H 1.09001 * 109.47343 * 178.80194 * 12 11 10 14 14 C 1.53001 * 109.47075 * 58.80208 * 12 11 10 15 15 C 1.53004 * 109.47447 * 298.80360 * 12 11 10 16 16 C 1.52997 * 109.46945 * 294.99766 * 15 12 11 17 17 C 1.50696 * 109.47216 * 179.97438 * 16 15 12 18 18 H 1.08006 * 119.99683 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00312 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99716 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00368 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46961 * 89.99673 * 21 19 17 23 23 H 1.48499 * 109.47421 * 210.00156 * 21 19 17 24 24 H 1.48500 * 109.46718 * 330.00173 * 21 19 17 25 25 C 1.46957 * 110.88046 * 300.68560 * 11 10 9 26 26 C 1.46963 * 110.99388 * 120.00481 * 8 7 5 27 27 C 1.38079 * 119.96359 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46840 * 269.98188 * 1 2 3 29 29 H 1.09008 * 109.47232 * 29.97747 * 1 2 3 30 30 H 1.08994 * 109.47364 * 149.97980 * 1 2 3 31 31 H 1.07993 * 119.92602 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.95997 * 180.27250 * 4 3 2 33 33 H 1.09002 * 109.47152 * 269.72030 * 6 5 4 34 34 H 1.09001 * 109.46980 * 149.72130 * 6 5 4 35 35 H 1.09004 * 109.47113 * 29.72111 * 6 5 4 36 36 H 1.08999 * 109.49532 * 296.78412 * 9 8 7 37 37 H 1.09006 * 109.48881 * 56.85090 * 9 8 7 38 38 H 1.09006 * 109.48602 * 298.43938 * 10 9 8 39 39 H 1.08998 * 109.50954 * 178.38302 * 10 9 8 40 40 H 1.09001 * 109.47024 * 300.00181 * 14 12 11 41 41 H 1.09001 * 109.47308 * 60.00077 * 14 12 11 42 42 H 1.08995 * 109.47519 * 179.97438 * 14 12 11 43 43 H 1.09002 * 109.46741 * 54.99715 * 15 12 11 44 44 H 1.08994 * 109.47125 * 175.00041 * 15 12 11 45 45 H 1.08995 * 109.47110 * 300.00206 * 16 15 12 46 46 H 1.09006 * 109.47096 * 59.99780 * 16 15 12 47 47 H 0.97001 * 119.99278 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.48885 * 299.34815 * 25 11 10 49 49 H 1.08997 * 109.48828 * 179.28563 * 25 11 10 50 50 H 1.08997 * 109.49008 * 303.15474 * 26 8 7 51 51 H 1.09001 * 109.49093 * 63.19961 * 26 8 7 52 52 H 1.08001 * 120.03644 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5804 1.2027 0.0057 5 6 4.2765 0.0097 -0.0001 6 6 5.7835 0.0156 0.0004 7 6 3.5859 -1.1954 -0.0005 8 7 4.2867 -2.4036 -0.0015 9 6 4.0264 -3.1623 -1.2328 10 6 4.8716 -4.4383 -1.2309 11 7 4.5429 -5.2388 -0.0430 12 6 5.2798 -6.5095 -0.0440 13 1 5.0341 -7.0727 0.8563 14 6 6.7832 -6.2271 -0.0746 15 6 4.8888 -7.3249 -1.2783 16 6 3.4119 -7.7136 -1.1858 17 6 3.0267 -8.5162 -2.4017 18 1 3.7618 -8.7282 -3.1640 19 6 1.7357 -8.9798 -2.5410 20 7 0.8404 -8.7212 -1.6130 21 14 1.2583 -9.9753 -4.0479 22 1 1.4833 -11.4184 -3.7794 23 1 -0.1760 -9.7472 -4.3579 24 1 2.0881 -9.5516 -5.2042 25 6 4.8030 -4.4800 1.1883 26 6 3.9579 -3.2040 1.1864 27 6 2.1966 -1.1962 -0.0005 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5141 31 1 1.6560 2.1325 -0.0004 32 1 4.1167 2.1401 0.0102 33 1 6.1472 0.0172 -1.0271 34 1 6.1501 -0.8731 0.5142 35 1 6.1432 0.9069 0.5146 36 1 2.9699 -3.4261 -1.2811 37 1 4.2894 -2.5533 -2.0977 38 1 5.9289 -4.1741 -1.2101 39 1 4.6590 -5.0172 -2.1296 40 1 7.0289 -5.6639 -0.9750 41 1 7.0618 -5.6463 0.8046 42 1 7.3301 -7.1700 -0.0749 43 1 5.0518 -6.7272 -2.1751 44 1 5.4994 -8.2264 -1.3265 45 1 3.2490 -8.3111 -0.2889 46 1 2.8012 -6.8120 -1.1375 47 1 -0.0678 -9.0477 -1.7109 48 1 5.8595 -4.2163 1.2366 49 1 4.5401 -5.0890 2.0532 50 1 4.1708 -2.6253 2.0852 51 1 2.9005 -3.4679 1.1658 52 1 1.6566 -2.1316 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493809.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:00 Heat of formation + Delta-G solvation = 22.956207 kcal Electronic energy + Delta-G solvation = -27304.447039 eV Core-core repulsion = 23882.074531 eV Total energy + Delta-G solvation = -3422.372508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.42830 -38.81068 -36.33606 -33.86566 -33.25478 -31.80182 -30.77526 -29.76621 -29.27047 -28.67056 -25.89131 -25.05520 -24.61805 -23.43709 -22.54504 -21.33870 -20.42649 -19.95153 -18.69324 -16.74542 -16.12578 -15.84335 -15.74693 -15.33557 -14.96022 -14.59367 -14.36359 -14.33286 -13.89175 -13.79712 -13.51610 -13.28446 -13.09968 -12.87379 -12.69591 -12.63273 -12.32825 -11.96981 -11.92053 -11.72805 -11.65354 -11.56597 -11.35169 -11.29697 -11.17381 -11.01647 -10.87759 -10.76804 -10.43913 -10.37175 -10.03666 -9.59461 -9.19756 -8.88932 -8.80616 -8.43882 -8.39814 -8.24279 -7.73780 -5.89485 -3.90908 1.24476 1.30906 3.36138 3.42424 3.45590 3.61203 3.84766 4.26427 4.53069 4.74951 4.76642 4.97555 5.01108 5.13122 5.21809 5.24554 5.38506 5.43392 5.45935 5.48230 5.49823 5.52537 5.53199 5.60307 5.63300 5.66530 5.72534 5.73516 5.75744 5.83311 5.93048 5.94901 6.02830 6.12774 6.21047 6.23420 6.26557 6.31968 6.37447 6.43025 6.49953 6.58545 6.67466 6.84393 6.88609 6.97291 7.27929 7.43385 7.54520 7.61261 7.84168 8.05933 8.20687 8.56028 9.18107 9.71924 11.21364 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013085 B = 0.003396 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.334822 B = 8242.755305 C = 9704.984179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.117 4.117 5 C -0.070 4.070 6 C -0.103 4.103 7 C 0.096 3.904 8 N -0.502 5.502 9 C 0.064 3.936 10 C 0.055 3.945 11 N -0.519 5.519 12 C 0.082 3.918 13 H 0.077 0.923 14 C -0.184 4.184 15 C -0.104 4.104 16 C 0.031 3.969 17 C -0.519 4.519 18 H 0.050 0.950 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.886 3.114 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 C 0.057 3.943 26 C 0.063 3.937 27 C -0.142 4.142 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.009 0.991 46 H 0.030 0.970 47 H 0.258 0.742 48 H 0.039 0.961 49 H 0.077 0.923 50 H 0.073 0.927 51 H 0.048 0.952 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.131 19.885 5.950 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.135 4.135 5 C -0.071 4.071 6 C -0.159 4.159 7 C 0.002 3.998 8 N -0.224 5.224 9 C -0.063 4.063 10 C -0.073 4.073 11 N -0.243 5.243 12 C -0.026 4.026 13 H 0.095 0.905 14 C -0.243 4.243 15 C -0.141 4.141 16 C -0.006 4.006 17 C -0.558 4.558 18 H 0.069 0.931 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.714 3.286 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.072 4.072 26 C -0.064 4.064 27 C -0.162 4.162 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.027 0.973 46 H 0.048 0.952 47 H 0.067 0.933 48 H 0.057 0.943 49 H 0.095 0.905 50 H 0.092 0.908 51 H 0.066 0.934 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.953 19.817 5.990 21.839 hybrid contribution -0.436 -0.622 -0.816 1.115 sum 6.517 19.195 5.174 20.921 Atomic orbital electron populations 1.20797 0.91305 1.02796 1.02257 1.19785 0.95990 0.92883 0.99855 1.20985 0.94170 0.97287 1.01770 1.20937 0.94016 0.97264 1.01322 1.19793 0.96389 0.91408 0.99528 1.20615 0.90816 1.02452 1.02066 1.18668 0.90002 0.90959 1.00154 1.59849 1.56064 1.02958 1.03494 1.22231 0.99617 0.93667 0.90745 1.22206 0.97096 0.92812 0.95145 1.62291 1.56963 1.03924 1.01098 1.21848 0.89351 0.90214 1.01155 0.90478 1.22490 0.98945 1.01686 1.01150 1.21750 1.01094 0.97036 0.94266 1.18984 0.89057 0.96597 0.95993 1.21340 0.95208 1.33192 1.06010 0.93136 1.24993 0.96764 0.96459 0.96149 1.69985 1.03366 1.46256 1.33738 0.86697 0.77615 0.80582 0.83690 1.20826 1.21344 1.20008 1.22130 0.97739 0.93484 0.93823 1.22210 0.98993 0.93260 0.91916 1.21649 0.94694 0.98188 1.01641 0.91279 0.91687 0.91410 0.86353 0.86093 0.91674 0.90400 0.92597 0.93160 0.90725 0.94342 0.89051 0.92659 0.93347 0.92412 0.93300 0.93292 0.97284 0.95170 0.93259 0.94278 0.90496 0.90816 0.93361 0.85947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 36.00 0.36 -0.71 16 2 C -0.08 -0.96 5.88 -104.65 -0.62 -1.58 16 3 C -0.12 -1.28 9.70 -39.54 -0.38 -1.66 16 4 C -0.12 -1.20 9.69 -39.61 -0.38 -1.59 16 5 C -0.07 -0.81 5.90 -104.42 -0.62 -1.43 16 6 C -0.10 -1.02 9.77 36.01 0.35 -0.67 16 7 C 0.10 1.24 4.70 -83.78 -0.39 0.85 16 8 N -0.50 -6.66 3.63 -170.95 -0.62 -7.28 16 9 C 0.06 0.93 5.35 -3.77 -0.02 0.91 16 10 C 0.06 0.86 4.82 -3.77 -0.02 0.84 16 11 N -0.52 -8.53 4.15 -226.49 -0.94 -9.48 16 12 C 0.08 1.39 2.35 -67.71 -0.16 1.23 16 13 H 0.08 1.36 8.11 -51.93 -0.42 0.93 16 14 C -0.18 -2.57 8.49 37.16 0.32 -2.25 16 15 C -0.10 -2.12 4.45 -26.73 -0.12 -2.24 16 16 C 0.03 0.80 4.86 -27.89 -0.14 0.66 16 17 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 18 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -27.29 13.29 55.43 0.74 -26.56 16 21 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.06 0.79 5.25 -3.77 -0.02 0.77 16 26 C 0.06 0.84 5.31 -3.76 -0.02 0.82 16 27 C -0.14 -1.83 8.29 -39.38 -0.33 -2.16 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.51 8.09 -51.92 -0.42 0.09 16 30 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.85 7.46 -51.93 -0.39 0.46 16 35 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 36 H 0.05 0.82 7.44 -51.93 -0.39 0.44 16 37 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 38 H 0.04 0.56 6.47 -51.93 -0.34 0.23 16 39 H 0.09 1.56 6.07 -51.93 -0.32 1.25 16 40 H 0.05 0.77 6.46 -51.93 -0.34 0.43 16 41 H 0.05 0.62 6.59 -51.93 -0.34 0.28 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.99 6.11 -51.93 -0.32 0.67 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 46 H 0.03 0.84 7.75 -51.93 -0.40 0.44 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.04 0.52 6.60 -51.93 -0.34 0.18 16 49 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 50 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 51 H 0.05 0.71 7.24 -51.93 -0.38 0.34 16 52 H 0.12 1.68 7.06 -52.49 -0.37 1.31 16 LS Contribution 396.19 15.07 5.97 5.97 Total: -1.00 -30.51 396.19 -11.83 -42.34 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -9.36 Total: -0.14 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -2.59 Total: -21.82 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -0.82 Total: -43.31 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.51 -11.83 -42.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493809.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.293 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds