Wall clock time and date at job start Tue Mar 31 2020 10:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38313 * 119.96294 * 2 1 4 4 C 1.38266 * 120.14671 * 179.72556 * 3 2 1 5 5 C 1.38121 * 120.07700 * 0.55419 * 4 3 2 6 6 C 1.50703 * 120.03905 * 179.74784 * 5 4 3 7 7 C 1.38894 * 119.92393 * 359.46675 * 5 4 3 8 8 N 1.39675 * 120.07227 * 180.23121 * 7 5 4 9 9 C 1.46954 * 110.99867 * 243.79726 * 8 7 5 10 10 C 1.53052 * 109.36377 * 176.81573 * 9 8 7 11 11 N 1.46957 * 109.36668 * 58.40257 * 10 9 8 12 12 C 1.46890 * 111.00330 * 176.81085 * 11 10 9 13 13 H 1.09001 * 109.47343 * 178.80194 * 12 11 10 14 14 C 1.53001 * 109.47075 * 58.80208 * 12 11 10 15 15 C 1.53004 * 109.47447 * 298.80360 * 12 11 10 16 16 C 1.52997 * 109.46945 * 294.99766 * 15 12 11 17 17 C 1.50696 * 109.47216 * 179.97438 * 16 15 12 18 18 H 1.08006 * 119.99683 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00312 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99716 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00368 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46961 * 89.99673 * 21 19 17 23 23 H 1.48499 * 109.47421 * 210.00156 * 21 19 17 24 24 H 1.48500 * 109.46718 * 330.00173 * 21 19 17 25 25 C 1.46957 * 110.88046 * 300.68560 * 11 10 9 26 26 C 1.46963 * 110.99388 * 120.00481 * 8 7 5 27 27 C 1.38079 * 119.96359 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46840 * 269.98188 * 1 2 3 29 29 H 1.09008 * 109.47232 * 29.97747 * 1 2 3 30 30 H 1.08994 * 109.47364 * 149.97980 * 1 2 3 31 31 H 1.07993 * 119.92602 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.95997 * 180.27250 * 4 3 2 33 33 H 1.09002 * 109.47152 * 269.72030 * 6 5 4 34 34 H 1.09001 * 109.46980 * 149.72130 * 6 5 4 35 35 H 1.09004 * 109.47113 * 29.72111 * 6 5 4 36 36 H 1.08999 * 109.49532 * 296.78412 * 9 8 7 37 37 H 1.09006 * 109.48881 * 56.85090 * 9 8 7 38 38 H 1.09006 * 109.48602 * 298.43938 * 10 9 8 39 39 H 1.08998 * 109.50954 * 178.38302 * 10 9 8 40 40 H 1.09001 * 109.47024 * 300.00181 * 14 12 11 41 41 H 1.09001 * 109.47308 * 60.00077 * 14 12 11 42 42 H 1.08995 * 109.47519 * 179.97438 * 14 12 11 43 43 H 1.09002 * 109.46741 * 54.99715 * 15 12 11 44 44 H 1.08994 * 109.47125 * 175.00041 * 15 12 11 45 45 H 1.08995 * 109.47110 * 300.00206 * 16 15 12 46 46 H 1.09006 * 109.47096 * 59.99780 * 16 15 12 47 47 H 0.97001 * 119.99278 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.48885 * 299.34815 * 25 11 10 49 49 H 1.08997 * 109.48828 * 179.28563 * 25 11 10 50 50 H 1.08997 * 109.49008 * 303.15474 * 26 8 7 51 51 H 1.09001 * 109.49093 * 63.19961 * 26 8 7 52 52 H 1.08001 * 120.03644 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5804 1.2027 0.0057 5 6 4.2765 0.0097 -0.0001 6 6 5.7835 0.0156 0.0004 7 6 3.5859 -1.1954 -0.0005 8 7 4.2867 -2.4036 -0.0015 9 6 4.0264 -3.1623 -1.2328 10 6 4.8716 -4.4383 -1.2309 11 7 4.5429 -5.2388 -0.0430 12 6 5.2798 -6.5095 -0.0440 13 1 5.0341 -7.0727 0.8563 14 6 6.7832 -6.2271 -0.0746 15 6 4.8888 -7.3249 -1.2783 16 6 3.4119 -7.7136 -1.1858 17 6 3.0267 -8.5162 -2.4017 18 1 3.7618 -8.7282 -3.1640 19 6 1.7357 -8.9798 -2.5410 20 7 0.8404 -8.7212 -1.6130 21 14 1.2583 -9.9753 -4.0479 22 1 1.4833 -11.4184 -3.7794 23 1 -0.1760 -9.7472 -4.3579 24 1 2.0881 -9.5516 -5.2042 25 6 4.8030 -4.4800 1.1883 26 6 3.9579 -3.2040 1.1864 27 6 2.1966 -1.1962 -0.0005 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5141 31 1 1.6560 2.1325 -0.0004 32 1 4.1167 2.1401 0.0102 33 1 6.1472 0.0172 -1.0271 34 1 6.1501 -0.8731 0.5142 35 1 6.1432 0.9069 0.5146 36 1 2.9699 -3.4261 -1.2811 37 1 4.2894 -2.5533 -2.0977 38 1 5.9289 -4.1741 -1.2101 39 1 4.6590 -5.0172 -2.1296 40 1 7.0289 -5.6639 -0.9750 41 1 7.0618 -5.6463 0.8046 42 1 7.3301 -7.1700 -0.0749 43 1 5.0518 -6.7272 -2.1751 44 1 5.4994 -8.2264 -1.3265 45 1 3.2490 -8.3111 -0.2889 46 1 2.8012 -6.8120 -1.1375 47 1 -0.0678 -9.0477 -1.7109 48 1 5.8595 -4.2163 1.2366 49 1 4.5401 -5.0890 2.0532 50 1 4.1708 -2.6253 2.0852 51 1 2.9005 -3.4679 1.1658 52 1 1.6566 -2.1316 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172493809.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:59 Heat of formation + Delta-G solvation = 7.328976 kcal Electronic energy + Delta-G solvation = -27305.124687 eV Core-core repulsion = 23882.074531 eV Total energy + Delta-G solvation = -3423.050155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.45348 -39.94169 -37.52618 -35.38879 -34.59465 -33.35020 -31.96479 -31.21445 -30.21412 -29.78730 -27.20567 -26.73866 -25.49361 -24.65886 -23.67067 -22.99995 -21.48733 -21.21830 -19.98544 -18.38057 -17.81494 -16.84911 -16.74362 -16.54258 -16.34771 -16.07000 -15.80717 -15.49387 -14.90368 -14.78019 -14.69565 -14.39453 -14.37068 -14.05284 -13.99306 -13.72291 -13.42807 -13.28691 -13.21206 -13.14651 -12.87112 -12.80444 -12.69137 -12.55656 -12.36917 -12.25858 -12.20152 -12.05553 -11.97048 -11.75035 -11.51552 -11.38026 -11.19052 -10.90285 -10.49825 -9.71307 -9.55519 -9.26575 -9.00028 -8.14704 -6.25250 0.35118 0.43146 1.38530 1.40054 1.50840 2.42402 2.73316 2.78666 3.01237 3.17744 3.82605 3.93837 3.95301 3.97288 4.13612 4.16651 4.26845 4.31671 4.32868 4.34540 4.37421 4.44118 4.48525 4.53192 4.68702 4.74590 4.75872 4.79702 4.82915 4.85152 4.87707 4.90251 4.93901 4.95425 5.01262 5.03734 5.09908 5.15270 5.17829 5.32666 5.45460 5.46458 5.49292 5.58597 5.63481 5.71367 5.82101 5.87504 5.96773 6.00826 6.26834 6.30521 6.34641 6.47255 6.94696 7.43026 8.96461 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013085 B = 0.003396 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.334822 B = 8242.755305 C = 9704.984179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.122 4.122 4 C -0.114 4.114 5 C -0.078 4.078 6 C -0.098 4.098 7 C 0.075 3.925 8 N -0.490 5.490 9 C 0.072 3.928 10 C 0.063 3.937 11 N -0.545 5.545 12 C 0.088 3.912 13 H 0.067 0.933 14 C -0.171 4.171 15 C -0.092 4.092 16 C 0.042 3.958 17 C -0.541 4.541 18 H 0.056 0.944 19 C -0.001 4.001 20 N -0.932 5.932 21 Si 0.959 3.041 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.264 1.264 25 C 0.062 3.938 26 C 0.068 3.932 27 C -0.161 4.161 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.019 0.981 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.052 0.948 45 H -0.023 1.023 46 H -0.001 1.001 47 H 0.260 0.740 48 H 0.055 0.945 49 H 0.078 0.922 50 H 0.090 0.910 51 H 0.023 0.977 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.741 21.780 5.542 24.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.140 4.140 4 C -0.132 4.132 5 C -0.078 4.078 6 C -0.155 4.155 7 C -0.019 4.019 8 N -0.211 5.211 9 C -0.055 4.055 10 C -0.064 4.064 11 N -0.270 5.270 12 C -0.020 4.020 13 H 0.085 0.915 14 C -0.230 4.230 15 C -0.130 4.130 16 C 0.005 3.995 17 C -0.579 4.579 18 H 0.074 0.926 19 C -0.198 4.198 20 N -0.573 5.573 21 Si 0.784 3.216 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.188 1.188 25 C -0.066 4.066 26 C -0.059 4.059 27 C -0.182 4.182 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.164 0.836 32 H 0.168 0.832 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.038 0.962 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.071 0.929 45 H -0.004 1.004 46 H 0.018 0.982 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.097 0.903 50 H 0.109 0.891 51 H 0.042 0.958 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.580 21.718 5.585 24.010 hybrid contribution -1.005 -1.152 -0.655 1.664 sum 7.575 20.565 4.930 22.464 Atomic orbital electron populations 1.20818 0.90215 1.03124 1.02853 1.20052 0.97023 0.92834 0.99656 1.21331 0.94533 0.97725 1.00370 1.21305 0.94183 0.97908 0.99836 1.20057 0.97429 0.91175 0.99186 1.20605 0.89526 1.02979 1.02368 1.18816 0.90053 0.91238 1.01805 1.59888 1.55712 1.02873 1.02618 1.22095 0.97605 0.93782 0.92047 1.22083 0.97973 0.92519 0.93872 1.62204 1.57934 1.04392 1.02463 1.21653 0.91739 0.89973 0.98651 0.91477 1.22337 0.95989 1.02508 1.02134 1.21556 0.97128 0.97863 0.96424 1.18780 0.92481 0.94345 0.93879 1.21795 0.95727 1.33531 1.06874 0.92624 1.25944 0.96747 0.97627 0.99497 1.70134 1.03797 1.47424 1.35942 0.85536 0.77347 0.78999 0.79692 1.19801 1.20921 1.18786 1.22134 0.98602 0.93263 0.92602 1.22167 0.97477 0.93461 0.92799 1.21598 0.95064 0.98080 1.03411 0.90513 0.89753 0.92663 0.83612 0.83170 0.91392 0.91456 0.90487 0.96231 0.89820 0.92721 0.91319 0.92287 0.91595 0.91544 0.93056 0.92915 1.00429 0.98208 0.93103 0.92707 0.90338 0.89148 0.95821 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.08 10.01 71.23 0.71 -1.37 16 2 C -0.09 -2.12 5.88 -19.89 -0.12 -2.24 16 3 C -0.12 -2.22 9.70 22.29 0.22 -2.01 16 4 C -0.11 -2.03 9.69 22.25 0.22 -1.81 16 5 C -0.08 -1.66 5.90 -19.73 -0.12 -1.78 16 6 C -0.10 -1.71 9.77 71.24 0.70 -1.02 16 7 C 0.07 1.93 4.70 38.22 0.18 2.11 16 8 N -0.49 -13.14 3.63 -694.76 -2.52 -15.66 16 9 C 0.07 2.17 5.35 86.31 0.46 2.63 16 10 C 0.06 2.00 4.82 86.31 0.42 2.41 16 11 N -0.55 -18.44 4.15 -870.47 -3.61 -22.06 16 12 C 0.09 3.00 2.35 44.92 0.11 3.10 16 13 H 0.07 2.41 8.11 -2.39 -0.02 2.39 16 14 C -0.17 -4.45 8.49 71.98 0.61 -3.84 16 15 C -0.09 -3.84 4.45 30.59 0.14 -3.71 16 16 C 0.04 2.31 4.86 29.85 0.15 2.45 16 17 C -0.54 -31.81 9.11 25.60 0.23 -31.58 16 18 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 19 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 20 N -0.93 -58.81 13.29 21.45 0.28 -58.52 16 21 Si 0.96 45.63 29.54 68.60 2.03 47.66 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 25 C 0.06 1.71 5.25 86.31 0.45 2.17 16 26 C 0.07 1.86 5.31 86.31 0.46 2.32 16 27 C -0.16 -4.37 8.29 22.40 0.19 -4.19 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.20 8.09 -2.38 -0.02 1.18 16 30 H 0.05 1.13 8.08 -2.39 -0.02 1.11 16 31 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.33 7.46 -2.39 -0.02 1.31 16 35 H 0.08 1.01 8.08 -2.38 -0.02 0.99 16 36 H 0.02 0.70 7.44 -2.39 -0.02 0.68 16 37 H 0.08 2.34 8.13 -2.38 -0.02 2.32 16 38 H 0.05 1.54 6.47 -2.38 -0.02 1.52 16 39 H 0.07 2.45 6.07 -2.39 -0.01 2.43 16 40 H 0.06 1.50 6.46 -2.39 -0.02 1.49 16 41 H 0.07 1.51 6.59 -2.39 -0.02 1.49 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.05 2.11 6.11 -2.39 -0.01 2.09 16 44 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 45 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 46 H 0.00 -0.03 7.75 -2.38 -0.02 -0.05 16 47 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 48 H 0.05 1.36 6.60 -2.39 -0.02 1.35 16 49 H 0.08 2.13 8.12 -2.39 -0.02 2.11 16 50 H 0.09 2.16 8.13 -2.39 -0.02 2.14 16 51 H 0.02 0.76 7.24 -2.39 -0.02 0.74 16 52 H 0.10 3.05 7.06 -2.91 -0.02 3.03 16 Total: -1.00 -68.15 396.19 2.50 -65.65 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.87 Total: 18.86 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 5.46 Total: -35.93 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -5.85 Total: -96.24 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -68.15 2.50 -65.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493809.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.981 kcal (2) G-P(sol) polarization free energy of solvation -68.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds