Wall clock time and date at job start Tue Mar 31 2020 11:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47839 * 2 1 4 4 C 1.53006 * 109.46626 * 119.99931 * 2 1 3 5 5 C 1.52999 * 109.46811 * 184.99727 * 4 2 1 6 6 C 1.50696 * 109.47144 * 179.97438 * 5 4 2 7 7 H 1.07998 * 119.99936 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00308 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99744 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99943 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47335 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47020 * 119.99973 * 10 8 6 13 13 H 1.48509 * 109.46753 * 239.99583 * 10 8 6 14 14 N 1.46898 * 109.47222 * 239.99546 * 2 1 3 15 15 C 1.46962 * 111.00028 * 306.05054 * 14 2 1 16 16 C 1.53049 * 109.36280 * 183.18564 * 15 14 2 17 17 N 1.46959 * 109.36566 * 301.59889 * 16 15 14 18 18 C 1.46901 * 110.99656 * 183.19415 * 17 16 15 19 19 C 1.50702 * 109.46773 * 293.94676 * 18 17 16 20 20 C 1.38230 * 120.00677 * 269.73054 * 19 18 17 21 21 C 1.38234 * 120.00339 * 179.80837 * 20 19 18 22 22 C 1.38238 * 119.99650 * 0.40168 * 21 20 19 23 23 C 1.38234 * 120.00085 * 359.85257 * 22 21 20 24 24 C 1.38226 * 120.00122 * 359.95886 * 23 22 21 25 25 C 1.46949 * 110.88184 * 59.32020 * 17 16 15 26 26 H 1.09004 * 109.48327 * 60.64416 * 25 17 16 27 27 C 1.52994 * 109.49185 * 180.69004 * 25 17 16 28 28 C 1.46958 * 111.00149 * 69.84745 * 14 2 1 29 29 H 1.09002 * 109.46719 * 60.00158 * 1 2 3 30 30 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47160 * 300.00438 * 1 2 3 32 32 H 1.08992 * 109.47046 * 304.99570 * 4 2 1 33 33 H 1.08997 * 109.47395 * 65.00111 * 4 2 1 34 34 H 1.09009 * 109.47170 * 300.00068 * 5 4 2 35 35 H 1.09001 * 109.47273 * 59.99848 * 5 4 2 36 36 H 0.96993 * 119.99974 * 180.02562 * 9 8 6 37 37 H 1.08997 * 109.49043 * 303.15451 * 15 14 2 38 38 H 1.09008 * 109.48480 * 63.19904 * 15 14 2 39 39 H 1.08996 * 109.49005 * 61.57041 * 16 15 14 40 40 H 1.09007 * 109.48786 * 181.61219 * 16 15 14 41 41 H 1.08999 * 109.47616 * 53.95224 * 18 17 16 42 42 H 1.09008 * 109.46854 * 173.95942 * 18 17 16 43 43 H 1.08007 * 119.99634 * 0.02562 * 20 19 18 44 44 H 1.07998 * 120.00192 * 180.22982 * 21 20 19 45 45 H 1.08004 * 119.99526 * 179.83027 * 22 21 20 46 46 H 1.07998 * 119.99440 * 179.97438 * 23 22 21 47 47 H 1.08006 * 120.00239 * 179.97438 * 24 23 22 48 48 H 1.08995 * 109.47226 * 59.99935 * 27 25 17 49 49 H 1.08998 * 109.47388 * 180.02562 * 27 25 17 50 50 H 1.09002 * 109.47017 * 299.99907 * 27 25 17 51 51 H 1.09004 * 109.48870 * 296.78409 * 28 14 2 52 52 H 1.09006 * 109.48612 * 56.84176 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.6134 1.3138 6 6 4.0669 -1.3232 2.5446 7 1 3.3684 -1.8029 3.2141 8 6 5.4182 -1.3594 2.8165 9 7 6.2687 -0.7739 2.0020 10 14 6.0407 -2.2399 4.3418 11 1 4.8907 -2.8114 5.0875 12 1 6.9633 -3.3323 3.9409 13 1 6.7630 -1.2755 5.2099 14 7 2.0197 -0.6926 -1.1994 15 6 1.4340 -2.0361 -1.3077 16 6 2.0283 -2.7522 -2.5228 17 7 1.7582 -1.9639 -3.7333 18 6 2.2478 -2.6565 -4.9327 19 6 3.7519 -2.7386 -4.8865 20 6 4.5166 -1.7314 -5.4447 21 6 5.8962 -1.8048 -5.3988 22 6 6.5111 -2.8895 -4.8020 23 6 5.7464 -3.8993 -4.2484 24 6 4.3669 -3.8240 -4.2909 25 6 2.3438 -0.6204 -3.6250 26 1 3.4241 -0.7033 -3.5058 27 6 2.0296 0.1771 -4.8922 28 6 1.7496 0.0957 -2.4099 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6053 -0.2617 2.1370 33 1 1.7515 -1.7715 1.2057 34 1 3.9994 -1.0730 0.4260 35 1 3.8532 0.4368 1.3574 36 1 7.2193 -0.7997 2.1931 37 1 1.6582 -2.6044 -0.4051 38 1 0.3536 -1.9533 -1.4265 39 1 3.1049 -2.8592 -2.3912 40 1 1.5742 -3.7382 -2.6218 41 1 1.8299 -3.6626 -4.9674 42 1 1.9412 -2.1048 -5.8215 43 1 4.0361 -0.8854 -5.9136 44 1 6.4937 -1.0161 -5.8316 45 1 7.5891 -2.9482 -4.7685 46 1 6.2269 -4.7469 -3.7825 47 1 3.7694 -4.6132 -3.8587 48 1 0.9493 0.2604 -5.0106 49 1 2.4645 1.1734 -4.8117 50 1 2.4516 -0.3343 -5.7573 51 1 0.6728 0.2027 -2.5415 52 1 2.2039 1.0816 -2.3107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172498241.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:28 Heat of formation + Delta-G solvation = 30.341142 kcal Electronic energy + Delta-G solvation = -27990.418775 eV Core-core repulsion = 24568.366502 eV Total energy + Delta-G solvation = -3422.052273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.29075 -38.72668 -36.60665 -33.46624 -32.59380 -32.06640 -30.74315 -30.59356 -29.05498 -27.64819 -26.22665 -25.10115 -23.69419 -22.87866 -22.22307 -21.51265 -20.90316 -19.39490 -18.70875 -16.74261 -16.20050 -16.07281 -15.68341 -15.27925 -15.15507 -14.74798 -14.53208 -14.34454 -14.09771 -13.84107 -13.44382 -13.14611 -12.87790 -12.61757 -12.56470 -12.36102 -12.17933 -12.06970 -11.80260 -11.63812 -11.55459 -11.49201 -11.24257 -11.07754 -10.88758 -10.85918 -10.83233 -10.56681 -10.40873 -10.24931 -9.94749 -9.57017 -9.16840 -8.85174 -8.83510 -8.70697 -8.24548 -8.21852 -7.67311 -5.87031 -3.88265 1.37863 1.45546 3.36263 3.43618 3.47653 3.77352 4.07317 4.28864 4.54850 4.76963 4.81224 4.97702 5.04011 5.12083 5.16700 5.18091 5.38453 5.46486 5.48464 5.50775 5.53468 5.58130 5.61148 5.64824 5.67580 5.72407 5.76753 5.79786 5.83278 5.96928 6.00092 6.06272 6.12275 6.17271 6.24714 6.29423 6.32088 6.39623 6.48818 6.51103 6.57099 6.60211 6.70397 6.91589 7.04715 7.10849 7.16366 7.32566 7.60488 7.65676 7.87110 8.09432 8.24701 8.58978 9.21103 9.74323 11.23907 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010404 B = 0.004510 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.675496 B = 6206.707182 C = 7987.995055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.082 3.918 3 H 0.075 0.925 4 C -0.101 4.101 5 C 0.031 3.969 6 C -0.517 4.517 7 H 0.051 0.949 8 C 0.057 3.943 9 N -0.893 5.893 10 Si 0.885 3.115 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 N -0.518 5.518 15 C 0.056 3.944 16 C 0.052 3.948 17 N -0.523 5.523 18 C 0.090 3.910 19 C -0.120 4.120 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.107 4.107 25 C 0.079 3.921 26 H 0.060 0.940 27 C -0.150 4.150 28 C 0.063 3.937 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.031 0.969 35 H 0.008 0.992 36 H 0.257 0.743 37 H 0.086 0.914 38 H 0.037 0.963 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.036 0.964 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.983 -2.229 -17.722 19.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.026 4.026 3 H 0.093 0.907 4 C -0.139 4.139 5 C -0.006 4.006 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.713 3.287 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.212 1.212 14 N -0.242 5.242 15 C -0.072 4.072 16 C -0.076 4.076 17 N -0.246 5.246 18 C -0.037 4.037 19 C -0.121 4.121 20 C -0.132 4.132 21 C -0.139 4.139 22 C -0.137 4.137 23 C -0.135 4.135 24 C -0.125 4.125 25 C -0.030 4.030 26 H 0.078 0.922 27 C -0.207 4.207 28 C -0.065 4.065 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.026 0.974 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.078 0.922 51 H 0.054 0.946 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.831 -2.186 -17.718 19.495 hybrid contribution 0.612 -0.446 0.991 1.247 sum -7.220 -2.632 -16.727 18.408 Atomic orbital electron populations 1.22485 0.98828 1.01677 1.01195 1.21845 0.91113 0.98459 0.91164 0.90651 1.21708 1.00743 0.98269 0.93187 1.18986 0.88127 0.96617 0.96919 1.21378 0.91830 1.33987 1.08387 0.93105 1.24991 0.97155 0.95785 0.96429 1.69993 1.02074 1.44382 1.36867 0.86657 0.78838 0.79559 0.83646 1.19871 1.21167 1.21169 1.62259 1.58269 1.02103 1.01529 1.22178 0.96389 0.90831 0.97801 1.22245 1.00408 0.95962 0.88952 1.62634 1.56956 1.02647 1.02360 1.21262 0.88243 0.99798 0.94440 1.20611 0.97458 0.95058 0.99004 1.21193 0.93866 0.98384 0.99805 1.21128 0.94787 0.98082 0.99881 1.21153 0.99849 0.94392 0.98262 1.21152 0.94033 0.99073 0.99244 1.21048 0.94745 0.97819 0.98916 1.21695 0.98288 0.88386 0.94615 0.92215 1.21986 1.02145 0.99658 0.96952 1.22143 0.98329 0.96693 0.89355 0.93475 0.92578 0.92453 0.93390 0.93418 0.95111 0.97372 0.93348 0.89616 0.94472 0.92896 0.90962 0.90242 0.89842 0.85953 0.86310 0.86290 0.86177 0.86363 0.92056 0.92140 0.92175 0.94593 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 8.44 37.16 0.31 -2.33 16 2 C 0.08 1.44 2.31 -67.71 -0.16 1.28 16 3 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 4 C -0.10 -2.13 4.55 -26.73 -0.12 -2.25 16 5 C 0.03 0.81 4.86 -27.89 -0.14 0.68 16 6 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 7 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.63 13.29 55.43 0.74 -26.90 16 10 Si 0.88 22.18 29.54 -169.99 -5.02 17.16 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 N -0.52 -8.87 4.11 -226.48 -0.93 -9.80 16 15 C 0.06 0.88 4.75 -3.76 -0.02 0.86 16 16 C 0.05 0.74 5.06 -3.77 -0.02 0.72 16 17 N -0.52 -6.66 4.73 -227.93 -1.08 -7.74 16 18 C 0.09 0.98 5.17 -4.97 -0.03 0.96 16 19 C -0.12 -1.45 4.01 -104.62 -0.42 -1.87 16 20 C -0.11 -1.35 7.84 -39.59 -0.31 -1.66 16 21 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 22 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 23 C -0.12 -1.49 10.05 -39.59 -0.40 -1.89 16 24 C -0.11 -1.34 8.05 -39.58 -0.32 -1.66 16 25 C 0.08 1.05 1.94 -67.67 -0.13 0.92 16 26 H 0.06 0.96 6.29 -51.93 -0.33 0.63 16 27 C -0.15 -1.55 8.38 37.15 0.31 -1.24 16 28 C 0.06 0.93 4.62 -3.77 -0.02 0.91 16 29 H 0.05 0.63 6.75 -51.93 -0.35 0.28 16 30 H 0.06 0.80 6.40 -51.93 -0.33 0.47 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.99 6.28 -51.93 -0.33 0.66 16 34 H 0.03 0.88 7.75 -51.92 -0.40 0.48 16 35 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.09 1.47 6.24 -51.93 -0.32 1.15 16 38 H 0.04 0.55 6.41 -51.92 -0.33 0.22 16 39 H 0.05 0.88 6.38 -51.93 -0.33 0.55 16 40 H 0.07 0.90 8.11 -51.92 -0.42 0.48 16 41 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 42 H 0.08 0.81 6.32 -51.92 -0.33 0.48 16 43 H 0.12 1.26 5.41 -52.48 -0.28 0.97 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 46 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 47 H 0.12 1.34 8.03 -52.48 -0.42 0.92 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.06 0.56 4.07 -51.93 -0.21 0.35 16 51 H 0.04 0.51 6.75 -51.93 -0.35 0.16 16 52 H 0.07 1.08 8.07 -51.93 -0.42 0.66 16 LS Contribution 383.95 15.07 5.79 5.79 Total: -1.00 -31.50 383.95 -12.08 -43.59 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.92 Total: 1.96 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -2.65 Total: -24.05 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -1.27 Total: -44.44 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.50 -12.08 -43.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498241.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.926 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds