Wall clock time and date at job start Tue Mar 31 2020 11:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47839 * 2 1 4 4 C 1.53006 * 109.46626 * 119.99931 * 2 1 3 5 5 C 1.52999 * 109.46811 * 184.99727 * 4 2 1 6 6 C 1.50696 * 109.47144 * 179.97438 * 5 4 2 7 7 H 1.07998 * 119.99936 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00308 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99744 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99943 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47335 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47020 * 119.99973 * 10 8 6 13 13 H 1.48509 * 109.46753 * 239.99583 * 10 8 6 14 14 N 1.46898 * 109.47222 * 239.99546 * 2 1 3 15 15 C 1.46962 * 111.00028 * 306.05054 * 14 2 1 16 16 C 1.53049 * 109.36280 * 183.18564 * 15 14 2 17 17 N 1.46959 * 109.36566 * 301.59889 * 16 15 14 18 18 C 1.46901 * 110.99656 * 183.19415 * 17 16 15 19 19 C 1.50702 * 109.46773 * 293.94676 * 18 17 16 20 20 C 1.38230 * 120.00677 * 269.73054 * 19 18 17 21 21 C 1.38234 * 120.00339 * 179.80837 * 20 19 18 22 22 C 1.38238 * 119.99650 * 0.40168 * 21 20 19 23 23 C 1.38234 * 120.00085 * 359.85257 * 22 21 20 24 24 C 1.38226 * 120.00122 * 359.95886 * 23 22 21 25 25 C 1.46949 * 110.88184 * 59.32020 * 17 16 15 26 26 H 1.09004 * 109.48327 * 60.64416 * 25 17 16 27 27 C 1.52994 * 109.49185 * 180.69004 * 25 17 16 28 28 C 1.46958 * 111.00149 * 69.84745 * 14 2 1 29 29 H 1.09002 * 109.46719 * 60.00158 * 1 2 3 30 30 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47160 * 300.00438 * 1 2 3 32 32 H 1.08992 * 109.47046 * 304.99570 * 4 2 1 33 33 H 1.08997 * 109.47395 * 65.00111 * 4 2 1 34 34 H 1.09009 * 109.47170 * 300.00068 * 5 4 2 35 35 H 1.09001 * 109.47273 * 59.99848 * 5 4 2 36 36 H 0.96993 * 119.99974 * 180.02562 * 9 8 6 37 37 H 1.08997 * 109.49043 * 303.15451 * 15 14 2 38 38 H 1.09008 * 109.48480 * 63.19904 * 15 14 2 39 39 H 1.08996 * 109.49005 * 61.57041 * 16 15 14 40 40 H 1.09007 * 109.48786 * 181.61219 * 16 15 14 41 41 H 1.08999 * 109.47616 * 53.95224 * 18 17 16 42 42 H 1.09008 * 109.46854 * 173.95942 * 18 17 16 43 43 H 1.08007 * 119.99634 * 0.02562 * 20 19 18 44 44 H 1.07998 * 120.00192 * 180.22982 * 21 20 19 45 45 H 1.08004 * 119.99526 * 179.83027 * 22 21 20 46 46 H 1.07998 * 119.99440 * 179.97438 * 23 22 21 47 47 H 1.08006 * 120.00239 * 179.97438 * 24 23 22 48 48 H 1.08995 * 109.47226 * 59.99935 * 27 25 17 49 49 H 1.08998 * 109.47388 * 180.02562 * 27 25 17 50 50 H 1.09002 * 109.47017 * 299.99907 * 27 25 17 51 51 H 1.09004 * 109.48870 * 296.78409 * 28 14 2 52 52 H 1.09006 * 109.48612 * 56.84176 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.6134 1.3138 6 6 4.0669 -1.3232 2.5446 7 1 3.3684 -1.8029 3.2141 8 6 5.4182 -1.3594 2.8165 9 7 6.2687 -0.7739 2.0020 10 14 6.0407 -2.2399 4.3418 11 1 4.8907 -2.8114 5.0875 12 1 6.9633 -3.3323 3.9409 13 1 6.7630 -1.2755 5.2099 14 7 2.0197 -0.6926 -1.1994 15 6 1.4340 -2.0361 -1.3077 16 6 2.0283 -2.7522 -2.5228 17 7 1.7582 -1.9639 -3.7333 18 6 2.2478 -2.6565 -4.9327 19 6 3.7519 -2.7386 -4.8865 20 6 4.5166 -1.7314 -5.4447 21 6 5.8962 -1.8048 -5.3988 22 6 6.5111 -2.8895 -4.8020 23 6 5.7464 -3.8993 -4.2484 24 6 4.3669 -3.8240 -4.2909 25 6 2.3438 -0.6204 -3.6250 26 1 3.4241 -0.7033 -3.5058 27 6 2.0296 0.1771 -4.8922 28 6 1.7496 0.0957 -2.4099 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6053 -0.2617 2.1370 33 1 1.7515 -1.7715 1.2057 34 1 3.9994 -1.0730 0.4260 35 1 3.8532 0.4368 1.3574 36 1 7.2193 -0.7997 2.1931 37 1 1.6582 -2.6044 -0.4051 38 1 0.3536 -1.9533 -1.4265 39 1 3.1049 -2.8592 -2.3912 40 1 1.5742 -3.7382 -2.6218 41 1 1.8299 -3.6626 -4.9674 42 1 1.9412 -2.1048 -5.8215 43 1 4.0361 -0.8854 -5.9136 44 1 6.4937 -1.0161 -5.8316 45 1 7.5891 -2.9482 -4.7685 46 1 6.2269 -4.7469 -3.7825 47 1 3.7694 -4.6132 -3.8587 48 1 0.9493 0.2604 -5.0106 49 1 2.4645 1.1734 -4.8117 50 1 2.4516 -0.3343 -5.7573 51 1 0.6728 0.2027 -2.5415 52 1 2.2039 1.0816 -2.3107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172498241.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:27 Heat of formation + Delta-G solvation = 12.036852 kcal Electronic energy + Delta-G solvation = -27991.212508 eV Core-core repulsion = 24568.366502 eV Total energy + Delta-G solvation = -3422.846006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.34084 -39.84370 -37.81239 -35.40861 -33.84774 -33.39977 -31.98961 -31.69295 -30.57459 -28.73249 -27.36673 -26.88406 -24.89808 -23.98887 -23.24735 -23.07691 -22.24508 -20.64407 -20.00902 -18.37265 -17.70274 -17.35272 -16.74143 -16.49893 -16.39479 -16.14952 -15.83494 -15.62936 -15.25512 -15.03263 -14.55521 -14.48102 -14.34522 -14.09466 -13.73265 -13.52997 -13.44480 -13.20334 -13.10944 -12.97502 -12.85861 -12.75868 -12.67938 -12.57137 -12.33096 -12.20365 -11.94693 -11.88357 -11.77371 -11.62989 -11.37576 -11.30682 -11.16482 -10.88540 -10.50729 -9.78964 -9.66823 -9.31831 -8.95400 -8.14824 -6.25508 0.42812 0.50270 1.37950 1.38321 1.51549 2.42068 2.79797 3.02729 3.08150 3.17595 3.83169 3.88526 3.94151 3.99740 4.11333 4.14334 4.22451 4.26355 4.30847 4.35987 4.42567 4.47661 4.49731 4.57143 4.61205 4.73128 4.73533 4.77409 4.79407 4.84849 4.89636 4.97371 5.00288 5.05102 5.06405 5.11225 5.13703 5.16680 5.22009 5.31561 5.39921 5.47054 5.55742 5.58225 5.62126 5.64000 5.86851 6.00336 6.06697 6.09765 6.12725 6.31610 6.36773 6.38630 6.94479 7.42789 8.96651 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010404 B = 0.004510 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.675496 B = 6206.707182 C = 7987.995055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.087 3.913 3 H 0.063 0.937 4 C -0.089 4.089 5 C 0.043 3.957 6 C -0.540 4.540 7 H 0.055 0.945 8 C 0.000 4.000 9 N -0.933 5.933 10 Si 0.960 3.040 11 H -0.262 1.262 12 H -0.280 1.280 13 H -0.278 1.278 14 N -0.546 5.546 15 C 0.060 3.940 16 C 0.059 3.941 17 N -0.515 5.515 18 C 0.092 3.908 19 C -0.125 4.125 20 C -0.120 4.120 21 C -0.133 4.133 22 C -0.135 4.135 23 C -0.137 4.137 24 C -0.120 4.120 25 C 0.083 3.917 26 H 0.028 0.972 27 C -0.142 4.142 28 C 0.065 3.935 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.049 0.951 34 H -0.002 1.002 35 H -0.024 1.024 36 H 0.260 0.740 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.022 0.978 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.131 0.869 46 H 0.127 0.873 47 H 0.125 0.875 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.073 0.927 51 H 0.049 0.951 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.691 -2.539 -18.309 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 H 0.081 0.919 4 C -0.127 4.127 5 C 0.006 3.994 6 C -0.578 4.578 7 H 0.074 0.926 8 C -0.198 4.198 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.185 1.185 12 H -0.205 1.205 13 H -0.204 1.204 14 N -0.270 5.270 15 C -0.068 4.068 16 C -0.070 4.070 17 N -0.238 5.238 18 C -0.035 4.035 19 C -0.127 4.127 20 C -0.138 4.138 21 C -0.151 4.151 22 C -0.153 4.153 23 C -0.155 4.155 24 C -0.139 4.139 25 C -0.026 4.026 26 H 0.046 0.954 27 C -0.199 4.199 28 C -0.063 4.063 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.017 0.983 35 H -0.006 1.006 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.040 0.960 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.121 0.879 43 H 0.157 0.843 44 H 0.154 0.846 45 H 0.149 0.851 46 H 0.145 0.855 47 H 0.143 0.857 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.091 0.909 51 H 0.067 0.933 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.558 -2.498 -18.314 20.809 hybrid contribution 1.200 -0.332 1.165 1.705 sum -8.358 -2.829 -17.150 19.286 Atomic orbital electron populations 1.22324 0.95738 1.02331 1.02428 1.21644 0.93421 0.97098 0.89941 0.91888 1.21512 0.96657 0.99046 0.95497 1.18768 0.91969 0.93799 0.94845 1.21813 0.92473 1.34286 1.09235 0.92631 1.25943 0.97407 0.96484 0.99924 1.70140 1.02505 1.45685 1.38999 0.85486 0.78450 0.78318 0.79316 1.18543 1.20531 1.20393 1.62182 1.59454 1.03071 1.02301 1.22114 0.97147 0.89953 0.97545 1.22155 0.98488 0.97022 0.89317 1.62678 1.56535 1.02311 1.02267 1.21379 0.87328 1.00709 0.94094 1.20798 0.98295 0.94878 0.98735 1.21462 0.93977 0.98763 0.99629 1.21446 0.95375 0.98434 0.99851 1.21429 1.00706 0.94655 0.98489 1.21401 0.94547 0.99743 0.99838 1.21261 0.94919 0.98522 0.99210 1.21644 0.96262 0.89163 0.95548 0.95412 1.21934 1.02925 0.99521 0.95561 1.22172 0.99075 0.96242 0.88791 0.91848 0.92130 0.91601 0.93033 0.93231 0.98339 1.00591 0.93118 0.91841 0.92988 0.95988 0.88947 0.88935 0.87903 0.84276 0.84560 0.85112 0.85494 0.85689 0.91033 0.91576 0.90863 0.93269 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.57 8.44 71.98 0.61 -3.96 16 2 C 0.09 3.06 2.31 44.92 0.10 3.16 16 3 H 0.06 2.34 8.03 -2.39 -0.02 2.32 16 4 C -0.09 -3.82 4.55 30.60 0.14 -3.68 16 5 C 0.04 2.41 4.86 29.85 0.15 2.55 16 6 C -0.54 -32.07 9.11 25.60 0.23 -31.83 16 7 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 8 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 9 N -0.93 -59.29 13.29 21.45 0.28 -59.01 16 10 Si 0.96 45.89 29.54 68.60 2.03 47.91 16 11 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 N -0.55 -18.87 4.11 -870.45 -3.58 -22.45 16 15 C 0.06 1.87 4.75 86.31 0.41 2.29 16 16 C 0.06 1.64 5.06 86.31 0.44 2.07 16 17 N -0.52 -12.28 4.73 -875.04 -4.14 -16.42 16 18 C 0.09 1.81 5.17 85.56 0.44 2.26 16 19 C -0.13 -2.95 4.01 -19.86 -0.08 -3.03 16 20 C -0.12 -2.76 7.84 22.27 0.17 -2.59 16 21 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 22 C -0.13 -3.42 10.05 22.27 0.22 -3.19 16 23 C -0.14 -3.61 10.05 22.27 0.22 -3.39 16 24 C -0.12 -3.07 8.05 22.27 0.18 -2.89 16 25 C 0.08 2.12 1.94 44.92 0.09 2.20 16 26 H 0.03 0.90 6.29 -2.39 -0.01 0.89 16 27 C -0.14 -2.60 8.38 71.98 0.60 -1.99 16 28 C 0.07 1.86 4.62 86.31 0.40 2.26 16 29 H 0.06 1.52 6.75 -2.39 -0.02 1.50 16 30 H 0.06 1.59 6.40 -2.39 -0.02 1.57 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 2.09 6.28 -2.39 -0.01 2.07 16 34 H 0.00 -0.11 7.75 -2.38 -0.02 -0.13 16 35 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 36 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.06 2.22 6.24 -2.39 -0.01 2.21 16 38 H 0.05 1.45 6.41 -2.38 -0.02 1.44 16 39 H 0.02 0.75 6.38 -2.39 -0.02 0.74 16 40 H 0.09 2.18 8.11 -2.38 -0.02 2.16 16 41 H 0.09 1.61 8.04 -2.39 -0.02 1.59 16 42 H 0.10 1.66 6.32 -2.38 -0.02 1.65 16 43 H 0.14 2.61 5.41 -2.91 -0.02 2.60 16 44 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 45 H 0.13 2.85 8.06 -2.91 -0.02 2.82 16 46 H 0.13 2.99 8.06 -2.91 -0.02 2.96 16 47 H 0.13 2.87 8.03 -2.91 -0.02 2.85 16 48 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.07 1.15 4.07 -2.39 -0.01 1.14 16 51 H 0.05 1.28 6.75 -2.38 -0.02 1.26 16 52 H 0.07 1.96 8.07 -2.38 -0.02 1.94 16 Total: -1.00 -69.81 383.95 0.48 -69.32 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.88 Total: 22.92 kcal Atomic # 6 Polarization: -47.29 SS G_CDS: 5.01 Total: -42.27 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -7.44 Total: -97.88 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -69.81 0.48 -69.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498241.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.361 kcal (2) G-P(sol) polarization free energy of solvation -69.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds