Wall clock time and date at job start Tue Mar 31 2020 11:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46821 * 2 1 4 4 C 1.53001 * 109.47139 * 239.99955 * 2 1 3 5 5 C 1.52999 * 109.47151 * 175.15825 * 4 2 1 6 6 C 1.50701 * 109.46989 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00146 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99628 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00548 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99802 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47240 * 90.00150 * 10 8 6 12 12 H 1.48496 * 109.47160 * 210.00085 * 10 8 6 13 13 H 1.48507 * 109.47137 * 330.00375 * 10 8 6 14 14 N 1.46904 * 109.47286 * 119.99882 * 2 1 3 15 15 C 1.46896 * 110.99785 * 290.30601 * 14 2 1 16 16 C 1.50705 * 109.46813 * 199.43234 * 15 14 2 17 17 C 1.38224 * 119.61575 * 92.98657 * 16 15 14 18 18 C 1.38632 * 119.15861 * 180.02562 * 17 16 15 19 19 C 1.38663 * 118.42079 * 0.02562 * 18 17 16 20 20 C 1.38188 * 119.16460 * 0.27056 * 19 18 17 21 21 N 1.31851 * 119.62102 * 273.00460 * 16 15 14 22 22 C 1.46905 * 110.99799 * 54.25999 * 14 2 1 23 23 C 1.53002 * 109.46859 * 266.77870 * 22 14 2 24 24 C 1.52998 * 109.46967 * 179.97438 * 23 22 14 25 25 C 1.52998 * 109.46859 * 60.00155 * 24 23 22 26 26 C 1.52998 * 109.47554 * 300.00091 * 25 24 23 27 27 C 1.52995 * 109.46824 * 146.78389 * 22 14 2 28 28 H 1.08997 * 109.47382 * 177.35312 * 1 2 3 29 29 H 1.09000 * 109.47535 * 297.35003 * 1 2 3 30 30 H 1.08998 * 109.47522 * 57.35423 * 1 2 3 31 31 H 1.08996 * 109.47187 * 295.16305 * 4 2 1 32 32 H 1.09003 * 109.47077 * 55.15784 * 4 2 1 33 33 H 1.08996 * 109.47467 * 300.00309 * 5 4 2 34 34 H 1.09005 * 109.46699 * 60.00232 * 5 4 2 35 35 H 0.96995 * 120.00257 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47534 * 79.43322 * 15 14 2 37 37 H 1.08996 * 109.47473 * 319.43444 * 15 14 2 38 38 H 1.07999 * 120.42325 * 0.04629 * 17 16 15 39 39 H 1.08003 * 120.78650 * 180.02562 * 18 17 16 40 40 H 1.08000 * 120.41854 * 179.97438 * 19 18 17 41 41 H 1.08001 * 119.61664 * 179.70748 * 20 19 18 42 42 H 1.09003 * 109.46871 * 26.77922 * 22 14 2 43 43 H 1.08998 * 109.47239 * 300.00438 * 23 22 14 44 44 H 1.09007 * 109.46936 * 60.00059 * 23 22 14 45 45 H 1.08997 * 109.47066 * 300.00531 * 24 23 22 46 46 H 1.08996 * 109.47049 * 180.02562 * 24 23 22 47 47 H 1.09008 * 109.47421 * 179.97438 * 25 24 23 48 48 H 1.09003 * 109.47416 * 60.00297 * 25 24 23 49 49 H 1.09003 * 109.46927 * 300.00505 * 26 25 24 50 50 H 1.08996 * 109.47745 * 180.02562 * 26 25 24 51 51 H 1.09009 * 109.46974 * 299.99518 * 27 22 14 52 52 H 1.08998 * 109.47279 * 59.99559 * 27 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5651 -0.6167 -1.3116 6 6 4.0675 -1.3277 -2.5417 7 1 3.3688 -1.8059 -3.2123 8 6 5.4190 -1.3667 -2.8117 9 7 6.2697 -0.7839 -1.9956 10 14 6.0417 -2.2473 -4.3369 11 1 6.0948 -1.2924 -5.4729 12 1 7.4016 -2.7845 -4.0778 13 1 5.1235 -3.3652 -4.6726 14 7 2.0197 -0.6925 1.1995 15 6 1.7464 0.0940 2.4097 16 6 2.6451 -0.3731 3.5257 17 6 3.8565 0.2583 3.7369 18 6 4.6760 -0.1794 4.7659 19 6 4.2447 -1.2408 5.5470 20 6 3.0237 -1.8266 5.2723 21 7 2.2670 -1.3794 4.2891 22 6 1.4399 -2.0382 1.3040 23 6 0.1777 -1.9841 2.1671 24 6 -0.4265 -3.3855 2.2754 25 6 0.5904 -4.3310 2.9178 26 6 1.8527 -4.3851 2.0549 27 6 2.4571 -2.9832 1.9468 28 1 -0.3634 -1.0265 -0.0475 29 1 -0.3634 0.4721 0.9128 30 1 -0.3634 0.5543 -0.8653 31 1 1.7491 -1.7709 -1.2070 32 1 1.6075 -0.2600 -2.1371 33 1 3.8559 0.4329 -1.3539 34 1 3.9975 -1.0781 -0.4237 35 1 7.2205 -0.8117 -2.1854 36 1 0.7049 -0.0391 2.7022 37 1 1.9353 1.1484 2.2083 38 1 4.1606 1.0823 3.1085 39 1 5.6277 0.2951 4.9545 40 1 4.8576 -1.6082 6.3568 41 1 2.6828 -2.6569 5.8731 42 1 1.1842 -2.4020 0.3087 43 1 0.4333 -1.6202 3.1622 44 1 -0.5470 -1.3107 1.7091 45 1 -0.6822 -3.7489 1.2801 46 1 -1.3259 -3.3469 2.8898 47 1 0.1599 -5.3294 2.9954 48 1 0.8461 -3.9677 3.9132 49 1 1.5969 -4.7484 1.0595 50 1 2.5770 -5.0590 2.5123 51 1 3.3563 -3.0217 1.3319 52 1 2.7127 -2.6193 2.9419 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172502783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:20 Heat of formation + Delta-G solvation = 35.494362 kcal Electronic energy + Delta-G solvation = -28682.384815 eV Core-core repulsion = 25260.556003 eV Total energy + Delta-G solvation = -3421.828812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.67549 -39.05211 -36.29932 -33.69990 -32.56091 -32.12124 -30.82277 -30.51485 -29.14787 -28.38350 -25.98543 -24.71814 -23.39013 -22.44515 -22.19476 -21.53136 -20.72105 -19.54091 -18.53330 -16.76869 -16.13847 -16.09507 -16.05867 -15.37697 -15.01361 -14.42680 -14.40438 -14.04334 -13.80231 -13.61111 -13.36772 -13.07549 -12.95965 -12.59076 -12.49453 -12.28630 -12.10351 -11.95238 -11.77911 -11.55254 -11.27866 -11.20472 -11.11532 -10.84504 -10.78331 -10.60551 -10.42911 -10.37440 -10.06119 -9.88978 -9.66179 -9.54743 -9.40154 -9.16485 -9.03820 -8.87205 -8.76983 -8.20350 -7.65150 -5.86448 -3.87125 1.24198 1.41031 3.37923 3.44140 3.47672 3.80209 4.33989 4.55077 4.56756 4.84967 4.93873 5.06430 5.09907 5.19520 5.25213 5.28380 5.40980 5.46783 5.49230 5.56651 5.58978 5.62733 5.71164 5.77609 5.82501 5.84667 5.87885 5.94717 6.00025 6.00373 6.08766 6.18129 6.26756 6.28537 6.32704 6.34721 6.40887 6.43989 6.47393 6.61469 6.62967 6.69643 6.79658 6.88910 6.95222 7.05326 7.33159 7.62771 7.70741 7.87494 8.10606 8.11513 8.26021 8.60107 9.21778 9.75287 11.24490 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.004627 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.682081 B = 6050.503511 C = 6758.325452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.083 3.917 3 H 0.076 0.924 4 C -0.102 4.102 5 C 0.032 3.968 6 C -0.517 4.517 7 H 0.049 0.951 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.884 3.116 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.508 5.508 15 C 0.089 3.911 16 C 0.147 3.853 17 C -0.147 4.147 18 C -0.077 4.077 19 C -0.180 4.180 20 C 0.090 3.910 21 N -0.466 5.466 22 C 0.096 3.904 23 C -0.167 4.167 24 C -0.109 4.109 25 C -0.113 4.113 26 C -0.114 4.114 27 C -0.121 4.121 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.008 0.992 34 H 0.032 0.968 35 H 0.257 0.743 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.048 0.952 48 H 0.063 0.937 49 H 0.055 0.945 50 H 0.053 0.947 51 H 0.063 0.937 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.287 -0.448 15.995 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.025 4.025 3 H 0.094 0.906 4 C -0.140 4.140 5 C -0.005 4.005 6 C -0.555 4.555 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.713 3.287 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.200 1.200 14 N -0.230 5.230 15 C -0.039 4.039 16 C 0.010 3.990 17 C -0.167 4.167 18 C -0.103 4.103 19 C -0.200 4.200 20 C -0.067 4.067 21 N -0.176 5.176 22 C -0.012 4.012 23 C -0.206 4.206 24 C -0.147 4.147 25 C -0.150 4.150 26 C -0.153 4.153 27 C -0.159 4.159 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.026 0.974 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.166 0.834 42 H 0.094 0.906 43 H 0.115 0.885 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.072 0.928 51 H 0.082 0.918 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.381 -0.838 15.793 18.918 hybrid contribution 0.597 -0.089 -0.727 0.945 sum -9.784 -0.926 15.066 17.988 Atomic orbital electron populations 1.22726 0.98798 1.01936 1.00989 1.21920 0.91123 0.98374 0.91098 0.90558 1.21738 1.00811 0.98331 0.93072 1.18974 0.88075 0.96519 0.96953 1.21339 0.91776 1.34002 1.08392 0.93223 1.24970 0.97142 0.95792 0.96388 1.69972 1.02073 1.44551 1.36799 0.86722 0.78140 0.80041 0.83833 1.20857 1.21376 1.20040 1.62221 1.58505 1.01998 1.00296 1.21148 0.96937 0.97247 0.88561 1.21105 0.93313 0.90768 0.93861 1.21977 0.94789 1.01934 0.98021 1.21559 0.99176 0.95543 0.94021 1.22036 0.98321 0.98114 1.01543 1.22622 0.91302 0.98485 0.94244 1.67391 1.34760 1.11108 1.04387 1.21595 0.92107 0.88901 0.98646 1.22683 0.97691 0.96861 1.03318 1.21396 0.97520 0.95798 1.00018 1.21468 0.95817 0.98167 0.99560 1.21479 0.96666 0.97615 0.99493 1.21877 0.98261 0.93179 1.02561 0.92096 0.93379 0.92638 0.93276 0.93378 0.97407 0.94977 0.93326 0.91768 0.90092 0.84745 0.85173 0.85404 0.83351 0.90598 0.88468 0.92226 0.92909 0.93011 0.93295 0.91809 0.92652 0.92831 0.91850 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.56 7.44 37.16 0.28 -2.29 16 2 C 0.08 1.39 2.27 -67.71 -0.15 1.23 16 3 H 0.08 1.30 7.84 -51.93 -0.41 0.89 16 4 C -0.10 -2.11 4.55 -26.73 -0.12 -2.23 16 5 C 0.03 0.83 4.86 -27.88 -0.14 0.70 16 6 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 7 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 10 Si 0.88 22.20 29.54 -169.99 -5.02 17.17 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 N -0.51 -8.34 3.75 -220.14 -0.83 -9.17 16 15 C 0.09 1.25 4.24 -4.98 -0.02 1.23 16 16 C 0.15 2.06 5.17 -82.59 -0.43 1.63 16 17 C -0.15 -1.98 9.73 -39.44 -0.38 -2.36 16 18 C -0.08 -0.90 10.18 -39.28 -0.40 -1.30 16 19 C -0.18 -1.93 10.11 -39.44 -0.40 -2.33 16 20 C 0.09 1.04 10.75 -17.55 -0.19 0.85 16 21 N -0.47 -6.21 5.75 -9.47 -0.05 -6.26 16 22 C 0.10 1.51 1.39 -67.71 -0.09 1.41 16 23 C -0.17 -2.23 3.37 -26.73 -0.09 -2.32 16 24 C -0.11 -1.35 5.92 -26.73 -0.16 -1.51 16 25 C -0.11 -1.39 5.92 -26.73 -0.16 -1.55 16 26 C -0.11 -1.63 5.92 -26.71 -0.16 -1.79 16 27 C -0.12 -2.00 5.18 -26.71 -0.14 -2.14 16 28 H 0.06 0.85 5.73 -51.93 -0.30 0.55 16 29 H 0.05 0.59 6.43 -51.93 -0.33 0.26 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 1.03 6.15 -51.93 -0.32 0.71 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.03 0.91 7.75 -51.93 -0.40 0.50 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 36 H 0.06 0.85 4.60 -51.93 -0.24 0.61 16 37 H 0.08 1.05 7.66 -51.93 -0.40 0.65 16 38 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.08 1.34 5.22 -51.93 -0.27 1.07 16 43 H 0.10 1.33 4.30 -51.93 -0.22 1.11 16 44 H 0.06 0.77 4.69 -51.93 -0.24 0.53 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 48 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 52 H 0.08 1.33 3.65 -51.93 -0.19 1.14 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -31.02 378.94 -11.40 -42.42 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -8.78 Total: 3.18 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -3.16 Total: -26.41 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: -0.14 Total: -42.08 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.02 -11.40 -42.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172502783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.913 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds