Wall clock time and date at job start Tue Mar 31 2020 11:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46821 * 2 1 4 4 C 1.53001 * 109.47139 * 239.99955 * 2 1 3 5 5 C 1.52999 * 109.47151 * 175.15825 * 4 2 1 6 6 C 1.50701 * 109.46989 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00146 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99628 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00548 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99802 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47240 * 90.00150 * 10 8 6 12 12 H 1.48496 * 109.47160 * 210.00085 * 10 8 6 13 13 H 1.48507 * 109.47137 * 330.00375 * 10 8 6 14 14 N 1.46904 * 109.47286 * 119.99882 * 2 1 3 15 15 C 1.46896 * 110.99785 * 290.30601 * 14 2 1 16 16 C 1.50705 * 109.46813 * 199.43234 * 15 14 2 17 17 C 1.38224 * 119.61575 * 92.98657 * 16 15 14 18 18 C 1.38632 * 119.15861 * 180.02562 * 17 16 15 19 19 C 1.38663 * 118.42079 * 0.02562 * 18 17 16 20 20 C 1.38188 * 119.16460 * 0.27056 * 19 18 17 21 21 N 1.31851 * 119.62102 * 273.00460 * 16 15 14 22 22 C 1.46905 * 110.99799 * 54.25999 * 14 2 1 23 23 C 1.53002 * 109.46859 * 266.77870 * 22 14 2 24 24 C 1.52998 * 109.46967 * 179.97438 * 23 22 14 25 25 C 1.52998 * 109.46859 * 60.00155 * 24 23 22 26 26 C 1.52998 * 109.47554 * 300.00091 * 25 24 23 27 27 C 1.52995 * 109.46824 * 146.78389 * 22 14 2 28 28 H 1.08997 * 109.47382 * 177.35312 * 1 2 3 29 29 H 1.09000 * 109.47535 * 297.35003 * 1 2 3 30 30 H 1.08998 * 109.47522 * 57.35423 * 1 2 3 31 31 H 1.08996 * 109.47187 * 295.16305 * 4 2 1 32 32 H 1.09003 * 109.47077 * 55.15784 * 4 2 1 33 33 H 1.08996 * 109.47467 * 300.00309 * 5 4 2 34 34 H 1.09005 * 109.46699 * 60.00232 * 5 4 2 35 35 H 0.96995 * 120.00257 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47534 * 79.43322 * 15 14 2 37 37 H 1.08996 * 109.47473 * 319.43444 * 15 14 2 38 38 H 1.07999 * 120.42325 * 0.04629 * 17 16 15 39 39 H 1.08003 * 120.78650 * 180.02562 * 18 17 16 40 40 H 1.08000 * 120.41854 * 179.97438 * 19 18 17 41 41 H 1.08001 * 119.61664 * 179.70748 * 20 19 18 42 42 H 1.09003 * 109.46871 * 26.77922 * 22 14 2 43 43 H 1.08998 * 109.47239 * 300.00438 * 23 22 14 44 44 H 1.09007 * 109.46936 * 60.00059 * 23 22 14 45 45 H 1.08997 * 109.47066 * 300.00531 * 24 23 22 46 46 H 1.08996 * 109.47049 * 180.02562 * 24 23 22 47 47 H 1.09008 * 109.47421 * 179.97438 * 25 24 23 48 48 H 1.09003 * 109.47416 * 60.00297 * 25 24 23 49 49 H 1.09003 * 109.46927 * 300.00505 * 26 25 24 50 50 H 1.08996 * 109.47745 * 180.02562 * 26 25 24 51 51 H 1.09009 * 109.46974 * 299.99518 * 27 22 14 52 52 H 1.08998 * 109.47279 * 59.99559 * 27 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5651 -0.6167 -1.3116 6 6 4.0675 -1.3277 -2.5417 7 1 3.3688 -1.8059 -3.2123 8 6 5.4190 -1.3667 -2.8117 9 7 6.2697 -0.7839 -1.9956 10 14 6.0417 -2.2473 -4.3369 11 1 6.0948 -1.2924 -5.4729 12 1 7.4016 -2.7845 -4.0778 13 1 5.1235 -3.3652 -4.6726 14 7 2.0197 -0.6925 1.1995 15 6 1.7464 0.0940 2.4097 16 6 2.6451 -0.3731 3.5257 17 6 3.8565 0.2583 3.7369 18 6 4.6760 -0.1794 4.7659 19 6 4.2447 -1.2408 5.5470 20 6 3.0237 -1.8266 5.2723 21 7 2.2670 -1.3794 4.2891 22 6 1.4399 -2.0382 1.3040 23 6 0.1777 -1.9841 2.1671 24 6 -0.4265 -3.3855 2.2754 25 6 0.5904 -4.3310 2.9178 26 6 1.8527 -4.3851 2.0549 27 6 2.4571 -2.9832 1.9468 28 1 -0.3634 -1.0265 -0.0475 29 1 -0.3634 0.4721 0.9128 30 1 -0.3634 0.5543 -0.8653 31 1 1.7491 -1.7709 -1.2070 32 1 1.6075 -0.2600 -2.1371 33 1 3.8559 0.4329 -1.3539 34 1 3.9975 -1.0781 -0.4237 35 1 7.2205 -0.8117 -2.1854 36 1 0.7049 -0.0391 2.7022 37 1 1.9353 1.1484 2.2083 38 1 4.1606 1.0823 3.1085 39 1 5.6277 0.2951 4.9545 40 1 4.8576 -1.6082 6.3568 41 1 2.6828 -2.6569 5.8731 42 1 1.1842 -2.4020 0.3087 43 1 0.4333 -1.6202 3.1622 44 1 -0.5470 -1.3107 1.7091 45 1 -0.6822 -3.7489 1.2801 46 1 -1.3259 -3.3469 2.8898 47 1 0.1599 -5.3294 2.9954 48 1 0.8461 -3.9677 3.9132 49 1 1.5969 -4.7484 1.0595 50 1 2.5770 -5.0590 2.5123 51 1 3.3563 -3.0217 1.3319 52 1 2.7127 -2.6193 2.9419 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172502783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:19 Heat of formation + Delta-G solvation = 19.873161 kcal Electronic energy + Delta-G solvation = -28683.062201 eV Core-core repulsion = 25260.556003 eV Total energy + Delta-G solvation = -3422.506199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.75734 -40.15635 -37.55474 -35.51929 -34.06328 -33.20276 -32.16902 -31.68287 -30.69117 -29.55891 -27.37286 -26.42604 -24.33235 -23.59180 -23.41565 -23.06001 -22.14832 -20.78829 -19.84614 -18.37960 -17.69495 -17.34251 -17.10706 -16.55829 -16.39905 -16.10779 -15.46522 -15.29312 -14.92877 -14.81976 -14.59900 -14.43774 -14.13813 -14.01351 -13.95140 -13.63018 -13.28552 -13.26332 -13.11401 -13.05325 -12.83902 -12.68415 -12.40464 -12.34845 -12.29145 -12.01544 -11.79378 -11.71156 -11.49716 -11.29619 -11.17588 -11.02717 -10.91204 -10.71651 -10.48923 -10.43968 -10.09477 -9.78844 -8.87962 -8.14025 -6.23891 0.28629 0.46265 1.37245 1.38891 1.49510 2.42230 2.76810 3.18183 3.28898 3.51427 3.83906 3.91982 3.99529 4.08885 4.11177 4.22328 4.27953 4.29751 4.35410 4.42213 4.46325 4.50724 4.58825 4.61898 4.69292 4.74762 4.78898 4.83087 4.86991 4.88491 4.93415 4.98337 5.01353 5.04670 5.11001 5.22927 5.28677 5.34420 5.38104 5.40582 5.41297 5.45583 5.47120 5.49468 5.57459 5.62863 5.70936 5.90324 5.95966 6.03944 6.33662 6.41265 6.44502 6.95516 7.14448 7.43714 8.97099 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.004627 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.682081 B = 6050.503511 C = 6758.325452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.088 3.912 3 H 0.071 0.929 4 C -0.090 4.090 5 C 0.046 3.954 6 C -0.541 4.541 7 H 0.051 0.949 8 C 0.002 3.998 9 N -0.930 5.930 10 Si 0.957 3.043 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.267 1.267 14 N -0.532 5.532 15 C 0.093 3.907 16 C 0.128 3.872 17 C -0.171 4.171 18 C -0.085 4.085 19 C -0.174 4.174 20 C 0.082 3.918 21 N -0.476 5.476 22 C 0.102 3.898 23 C -0.157 4.157 24 C -0.109 4.109 25 C -0.105 4.105 26 C -0.113 4.113 27 C -0.118 4.118 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.051 0.949 33 H -0.020 1.020 34 H 0.000 1.000 35 H 0.260 0.740 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.149 0.851 40 H 0.160 0.840 41 H 0.178 0.822 42 H 0.052 0.948 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.048 0.952 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.044 0.956 50 H 0.057 0.943 51 H 0.011 0.989 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.729 -1.398 17.161 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.020 4.020 3 H 0.089 0.911 4 C -0.128 4.128 5 C 0.008 3.992 6 C -0.579 4.579 7 H 0.070 0.930 8 C -0.196 4.196 9 N -0.571 5.571 10 Si 0.782 3.218 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.191 1.191 14 N -0.255 5.255 15 C -0.035 4.035 16 C -0.008 4.008 17 C -0.191 4.191 18 C -0.111 4.111 19 C -0.194 4.194 20 C -0.074 4.074 21 N -0.187 5.187 22 C -0.006 4.006 23 C -0.195 4.195 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.151 4.151 27 C -0.156 4.156 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.070 0.930 33 H -0.002 1.002 34 H 0.018 0.982 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.145 0.855 39 H 0.167 0.833 40 H 0.178 0.822 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.117 0.883 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.063 0.937 50 H 0.076 0.924 51 H 0.030 0.970 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.841 -1.781 16.955 20.757 hybrid contribution 1.155 0.202 -1.031 1.561 sum -10.686 -1.579 15.924 19.242 Atomic orbital electron populations 1.22579 0.95795 1.02329 1.02496 1.21714 0.93395 0.97250 0.89604 0.91093 1.21540 0.96902 0.98675 0.95645 1.18744 0.91766 0.93896 0.94751 1.21778 0.92416 1.34390 1.09320 0.93028 1.25893 0.97376 0.96496 0.99816 1.70115 1.02453 1.45729 1.38792 0.85581 0.77561 0.79026 0.79681 1.19636 1.20820 1.19112 1.62108 1.59594 1.02657 1.01147 1.21153 0.97711 0.97046 0.87569 1.21103 0.93686 0.91666 0.94394 1.22092 0.95467 1.02457 0.99088 1.21874 0.99678 0.95968 0.93541 1.22404 0.98261 0.97070 1.01673 1.23192 0.91459 0.98947 0.93839 1.67360 1.35408 1.10933 1.04961 1.21476 0.93065 0.88310 0.97769 1.22571 0.96292 0.98018 1.02615 1.21419 0.98175 0.94815 1.00298 1.21411 0.94470 0.99323 0.98997 1.21469 0.97996 0.95994 0.99624 1.21848 0.96667 0.95178 1.01887 0.92127 0.91297 0.91738 0.93895 0.93030 1.00205 0.98178 0.93107 0.90546 0.89748 0.85541 0.83327 0.82249 0.80536 0.93010 0.88325 0.91414 0.93304 0.90871 0.91456 0.91329 0.93735 0.92436 0.97029 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.56 7.44 71.98 0.54 -4.03 16 2 C 0.09 3.04 2.27 44.91 0.10 3.14 16 3 H 0.07 2.49 7.84 -2.38 -0.02 2.47 16 4 C -0.09 -3.88 4.55 30.59 0.14 -3.74 16 5 C 0.05 2.52 4.86 29.85 0.15 2.67 16 6 C -0.54 -32.35 9.11 25.60 0.23 -32.11 16 7 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 8 C 0.00 0.09 5.46 84.66 0.46 0.56 16 9 N -0.93 -58.86 13.29 21.45 0.28 -58.57 16 10 Si 0.96 46.20 29.54 68.60 2.03 48.23 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 13 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 14 N -0.53 -18.12 3.75 -850.39 -3.19 -21.30 16 15 C 0.09 2.62 4.24 85.56 0.36 2.98 16 16 C 0.13 3.62 5.17 42.55 0.22 3.84 16 17 C -0.17 -4.74 9.73 22.36 0.22 -4.52 16 18 C -0.08 -1.93 10.18 22.47 0.23 -1.71 16 19 C -0.17 -3.39 10.11 22.36 0.23 -3.17 16 20 C 0.08 1.73 10.75 84.67 0.91 2.64 16 21 N -0.48 -12.19 5.75 -183.89 -1.06 -13.25 16 22 C 0.10 3.28 1.39 44.91 0.06 3.35 16 23 C -0.16 -3.95 3.37 30.59 0.10 -3.85 16 24 C -0.11 -2.44 5.92 30.59 0.18 -2.26 16 25 C -0.10 -2.35 5.92 30.59 0.18 -2.17 16 26 C -0.11 -3.21 5.92 30.61 0.18 -3.03 16 27 C -0.12 -4.05 5.18 30.61 0.16 -3.90 16 28 H 0.06 1.61 5.73 -2.39 -0.01 1.60 16 29 H 0.07 1.55 6.43 -2.39 -0.02 1.53 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.89 6.15 -2.39 -0.01 1.87 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 34 H 0.00 -0.01 7.75 -2.38 -0.02 -0.03 16 35 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.08 1.93 4.60 -2.39 -0.01 1.92 16 37 H 0.08 2.24 7.66 -2.39 -0.02 2.22 16 38 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 40 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.18 2.60 8.06 -2.91 -0.02 2.57 16 42 H 0.05 1.90 5.22 -2.39 -0.01 1.89 16 43 H 0.10 2.52 4.30 -2.39 -0.01 2.51 16 44 H 0.07 1.61 4.69 -2.38 -0.01 1.59 16 45 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 48 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 52 H 0.09 2.94 3.65 -2.39 -0.01 2.93 16 Total: -1.00 -69.98 378.94 3.60 -66.38 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.89 Total: 23.82 kcal Atomic # 6 Polarization: -49.95 SS G_CDS: 4.65 Total: -45.30 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -3.96 Total: -93.13 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -69.98 3.60 -66.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172502783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.254 kcal (2) G-P(sol) polarization free energy of solvation -69.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds