Wall clock time and date at job start Tue Mar 31 2020 11:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47119 * 2 1 4 4 C 1.50700 * 109.47224 * 239.99868 * 2 1 3 5 5 C 1.38237 * 120.00169 * 202.67120 * 4 2 1 6 6 C 1.38232 * 119.99994 * 179.77031 * 5 4 2 7 7 C 1.38233 * 119.99927 * 0.50451 * 6 5 4 8 8 C 1.38235 * 120.00002 * 359.74774 * 7 6 5 9 9 C 1.38233 * 119.99887 * 22.94602 * 4 2 1 10 10 N 1.46900 * 109.46788 * 119.99991 * 2 1 3 11 11 C 1.46957 * 111.00334 * 288.69530 * 10 2 1 12 12 C 1.53052 * 109.36510 * 183.19172 * 11 10 2 13 13 N 1.46951 * 109.36311 * 301.59512 * 12 11 10 14 14 C 1.46899 * 111.00293 * 183.18996 * 13 12 11 15 15 H 1.08997 * 109.47671 * 188.27939 * 14 13 12 16 16 C 1.52998 * 109.46767 * 308.27918 * 14 13 12 17 17 C 1.53001 * 109.46818 * 68.27610 * 14 13 12 18 18 C 1.52995 * 109.47073 * 62.86922 * 17 14 13 19 19 C 1.50707 * 109.47105 * 183.83883 * 18 17 14 20 20 H 1.08000 * 119.99830 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99930 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99895 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00104 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47337 * 89.99591 * 23 21 19 25 25 H 1.48499 * 109.47206 * 209.99789 * 23 21 19 26 26 H 1.48511 * 109.46984 * 329.99554 * 23 21 19 27 27 C 1.46964 * 110.88178 * 59.32530 * 13 12 11 28 28 C 1.46963 * 111.00162 * 52.49641 * 10 2 1 29 29 H 1.09003 * 109.46911 * 60.00237 * 1 2 3 30 30 H 1.09004 * 109.47000 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47641 * 300.00145 * 1 2 3 32 32 H 1.08003 * 119.99405 * 359.97438 * 5 4 2 33 33 H 1.08000 * 119.99902 * 180.23169 * 6 5 4 34 34 H 1.08000 * 119.99802 * 179.73079 * 7 6 5 35 35 H 1.08000 * 119.99973 * 179.97438 * 8 7 6 36 36 H 1.07997 * 120.00300 * 0.02562 * 9 4 2 37 37 H 1.08994 * 109.48712 * 63.21666 * 11 10 2 38 38 H 1.09003 * 109.48605 * 303.15668 * 11 10 2 39 39 H 1.08999 * 109.48285 * 181.62784 * 12 11 10 40 40 H 1.08993 * 109.48921 * 61.56552 * 12 11 10 41 41 H 1.09003 * 109.46893 * 179.97438 * 16 14 13 42 42 H 1.09004 * 109.47580 * 60.00261 * 16 14 13 43 43 H 1.08997 * 109.47482 * 299.99447 * 16 14 13 44 44 H 1.09003 * 109.46813 * 182.86703 * 17 14 13 45 45 H 1.08999 * 109.47411 * 302.86375 * 17 14 13 46 46 H 1.09007 * 109.47196 * 303.83599 * 18 17 14 47 47 H 1.08993 * 109.47677 * 63.83898 * 18 17 14 48 48 H 0.96993 * 120.00155 * 180.02562 * 22 21 19 49 49 H 1.08993 * 109.48940 * 60.64366 * 27 13 12 50 50 H 1.08997 * 109.49237 * 180.71551 * 27 13 12 51 51 H 1.08995 * 109.48590 * 296.77959 * 28 10 2 52 52 H 1.09002 * 109.49042 * 56.84033 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 3.3042 -1.2518 -1.2452 6 6 3.7633 -1.9076 -2.3722 7 6 2.9543 -2.0129 -3.4881 8 6 1.6843 -1.4671 -3.4752 9 6 1.2234 -0.8158 -2.3464 10 7 2.0196 -0.6925 1.1995 11 6 1.7805 0.1113 2.4062 12 6 2.3745 -0.6068 3.6203 13 7 1.7625 -1.9368 3.7472 14 6 2.2520 -2.6294 4.9466 15 1 1.9001 -3.6609 4.9397 16 6 3.7819 -2.6126 4.9564 17 6 1.7262 -1.9194 6.1958 18 6 0.1986 -1.9984 6.2223 19 6 -0.3244 -1.2190 7.4014 20 1 0.3641 -0.7179 8.0657 21 6 -1.6818 -1.1459 7.6322 22 7 -2.1381 -0.4662 8.6614 23 14 -2.8725 -2.0133 6.4837 24 1 -3.1152 -3.3942 6.9730 25 1 -4.1566 -1.2683 6.4472 26 1 -2.2924 -2.0669 5.1176 27 6 2.0015 -2.7408 2.5405 28 6 1.4076 -2.0226 1.3264 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.9380 -1.1652 -0.3750 33 1 4.7556 -2.3337 -2.3823 34 1 3.3146 -2.5215 -4.3701 35 1 1.0525 -1.5490 -4.3472 36 1 0.2315 -0.3887 -2.3366 37 1 0.7080 0.2419 2.5496 38 1 2.2539 1.0867 2.2931 39 1 2.1730 -0.0263 4.5206 40 1 3.4513 -0.7130 3.4891 41 1 4.1452 -3.1261 5.8466 42 1 4.1340 -1.5810 4.9634 43 1 4.1565 -3.1184 4.0665 44 1 2.1306 -2.4023 7.0854 45 1 2.0358 -0.8744 6.1772 46 1 -0.2032 -1.5766 5.3009 47 1 -0.1100 -3.0401 6.3097 48 1 -3.0930 -0.4150 8.8240 49 1 3.0741 -2.8712 2.3970 50 1 1.5281 -3.7160 2.6535 51 1 0.3308 -1.9164 1.4575 52 1 1.6090 -2.6031 0.4261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172503156.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:44 Heat of formation + Delta-G solvation = 34.088502 kcal Electronic energy + Delta-G solvation = -27481.143413 eV Core-core repulsion = 24059.253638 eV Total energy + Delta-G solvation = -3421.889775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.28991 -39.00420 -36.94860 -33.84467 -32.60424 -31.29249 -31.11002 -30.52230 -29.52299 -28.66034 -26.04167 -25.23112 -23.76107 -23.35030 -22.43328 -21.30131 -20.56790 -19.65901 -18.67023 -17.20559 -16.61442 -16.24160 -15.74150 -15.26799 -14.98929 -14.75471 -14.59001 -14.29041 -14.08445 -13.99910 -13.74995 -13.48602 -13.19319 -13.02994 -12.66967 -12.53590 -12.46489 -12.10757 -11.91963 -11.79852 -11.76294 -11.68143 -11.41591 -11.14477 -11.07426 -11.00591 -10.88854 -10.62382 -10.40937 -10.24843 -9.73762 -9.64036 -9.42637 -9.05400 -8.99516 -8.84317 -8.43045 -8.34841 -7.82953 -5.94534 -3.90424 1.19363 1.27646 3.38373 3.45302 3.53686 3.60282 3.86401 4.18998 4.50869 4.55722 4.75414 4.84116 4.89848 4.96538 5.09659 5.13854 5.16529 5.29645 5.33528 5.38697 5.41489 5.44587 5.45316 5.49497 5.55226 5.56356 5.65916 5.68358 5.76587 5.85002 5.91904 5.95095 5.96871 6.05521 6.07006 6.17314 6.19430 6.25927 6.32931 6.36375 6.38214 6.47769 6.55810 6.72559 6.85823 7.03043 7.04044 7.10157 7.43301 7.47747 7.55468 7.74447 7.94594 8.65743 9.11757 9.69909 11.19347 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.003258 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.084768 B = 8591.948689 C = 9474.153274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.119 3.881 3 H 0.092 0.908 4 C -0.073 4.073 5 C -0.092 4.092 6 C -0.126 4.126 7 C -0.126 4.126 8 C -0.125 4.125 9 C -0.120 4.120 10 N -0.529 5.529 11 C 0.055 3.945 12 C 0.056 3.944 13 N -0.522 5.522 14 C 0.079 3.921 15 H 0.075 0.925 16 C -0.182 4.182 17 C -0.092 4.092 18 C -0.006 4.006 19 C -0.515 4.515 20 H 0.067 0.933 21 C 0.064 3.936 22 N -0.910 5.910 23 Si 0.878 3.122 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.261 1.261 27 C 0.057 3.943 28 C 0.056 3.944 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.131 0.869 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.031 0.969 47 H 0.003 0.997 48 H 0.260 0.740 49 H 0.037 0.963 50 H 0.073 0.927 51 H 0.048 0.952 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.437 -1.870 -23.928 26.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.011 3.989 3 H 0.109 0.891 4 C -0.074 4.074 5 C -0.110 4.110 6 C -0.144 4.144 7 C -0.144 4.144 8 C -0.143 4.143 9 C -0.138 4.138 10 N -0.253 5.253 11 C -0.073 4.073 12 C -0.072 4.072 13 N -0.246 5.246 14 C -0.029 4.029 15 H 0.093 0.907 16 C -0.241 4.241 17 C -0.130 4.130 18 C -0.043 4.043 19 C -0.554 4.554 20 H 0.085 0.915 21 C -0.136 4.136 22 N -0.550 5.550 23 Si 0.706 3.294 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.186 1.186 27 C -0.071 4.071 28 C -0.072 4.072 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.149 0.851 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.021 0.979 48 H 0.070 0.930 49 H 0.055 0.945 50 H 0.091 0.909 51 H 0.066 0.934 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.271 -1.816 -23.819 26.414 hybrid contribution -0.778 -0.481 -0.505 1.045 sum 10.493 -2.296 -24.324 26.590 Atomic orbital electron populations 1.22530 0.96694 1.02879 1.02501 1.20521 0.92957 0.97357 0.88081 0.89051 1.19831 0.94403 0.98603 0.94553 1.21100 0.95549 0.96456 0.97904 1.21189 0.99773 0.99860 0.93615 1.21130 0.94605 1.00304 0.98382 1.21088 0.96174 0.98890 0.98149 1.21162 0.99807 0.99772 0.93108 1.62381 1.57695 1.03208 1.01971 1.22212 1.00184 0.96028 0.88868 1.22183 0.96441 0.90819 0.97771 1.62304 1.58006 1.02579 1.01751 1.21868 0.91542 0.98305 0.91169 0.90703 1.22463 0.98423 1.01911 1.01306 1.21515 0.99011 0.99022 0.93471 1.19471 0.91296 0.95942 0.97641 1.21257 0.92449 1.31341 1.10312 0.91451 1.25019 0.98418 0.95093 0.95076 1.69928 1.13730 1.42424 1.28875 0.86784 0.80322 0.79624 0.82652 1.20616 1.21771 1.18565 1.22123 0.98749 0.96550 0.89700 1.22176 0.97616 0.89761 0.97641 0.91905 0.91728 0.91727 0.85139 0.86371 0.86540 0.86411 0.85933 0.93302 0.90663 0.89422 0.94164 0.92336 0.92368 0.93423 0.92856 0.92776 0.95024 0.97895 0.92991 0.94458 0.90854 0.93415 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.89 7.49 37.16 0.28 -1.61 16 2 C 0.12 1.22 2.71 -68.86 -0.19 1.03 16 3 H 0.09 0.90 8.00 -51.93 -0.42 0.49 16 4 C -0.07 -0.74 4.54 -104.62 -0.47 -1.22 16 5 C -0.09 -0.93 8.87 -39.58 -0.35 -1.28 16 6 C -0.13 -1.15 10.05 -39.59 -0.40 -1.54 16 7 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 8 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 9 C -0.12 -1.13 9.13 -39.58 -0.36 -1.49 16 10 N -0.53 -6.10 3.82 -227.87 -0.87 -6.97 16 11 C 0.05 0.70 5.35 -3.77 -0.02 0.68 16 12 C 0.06 0.80 4.70 -3.77 -0.02 0.78 16 13 N -0.52 -8.09 3.94 -226.50 -0.89 -8.98 16 14 C 0.08 1.27 2.32 -67.71 -0.16 1.11 16 15 H 0.07 1.21 7.99 -51.93 -0.41 0.80 16 16 C -0.18 -2.43 8.40 37.16 0.31 -2.12 16 17 C -0.09 -1.82 4.56 -26.73 -0.12 -1.94 16 18 C -0.01 -0.15 3.96 -27.88 -0.11 -0.26 16 19 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 20 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 21 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 22 N -0.91 -28.70 13.96 55.43 0.77 -27.92 16 23 Si 0.88 22.46 27.47 -169.99 -4.67 17.79 16 24 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 27 C 0.06 0.76 5.36 -3.76 -0.02 0.74 16 28 C 0.06 0.69 4.66 -3.76 -0.02 0.68 16 29 H 0.06 0.54 6.61 -51.93 -0.34 0.19 16 30 H 0.06 0.70 6.39 -51.93 -0.33 0.37 16 31 H 0.06 0.72 6.81 -51.93 -0.35 0.36 16 32 H 0.13 1.36 7.63 -52.48 -0.40 0.95 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 35 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.12 1.01 6.02 -52.49 -0.32 0.69 16 37 H 0.05 0.70 6.81 -51.93 -0.35 0.35 16 38 H 0.07 0.84 8.06 -51.93 -0.42 0.43 16 39 H 0.09 1.38 6.37 -51.93 -0.33 1.05 16 40 H 0.04 0.55 6.41 -51.93 -0.33 0.21 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.77 6.39 -51.93 -0.33 0.44 16 43 H 0.05 0.59 6.84 -51.93 -0.36 0.23 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.05 1.07 6.45 -51.93 -0.33 0.74 16 46 H 0.03 0.79 6.64 -51.93 -0.34 0.44 16 47 H 0.00 0.07 7.57 -51.93 -0.39 -0.33 16 48 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 49 H 0.04 0.48 6.84 -51.93 -0.36 0.13 16 50 H 0.07 0.96 8.05 -51.93 -0.42 0.55 16 51 H 0.05 0.66 6.41 -51.93 -0.33 0.33 16 52 H 0.07 0.87 6.95 -51.93 -0.36 0.51 16 LS Contribution 383.23 15.07 5.78 5.78 Total: -1.00 -31.16 383.23 -11.69 -42.85 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -8.94 Total: 0.35 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -2.87 Total: -22.88 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.99 Total: -43.88 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.67 Total: 17.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.16 -11.69 -42.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503156.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.940 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds