Wall clock time and date at job start Tue Mar 31 2020 11:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47119 * 2 1 4 4 C 1.50700 * 109.47224 * 239.99868 * 2 1 3 5 5 C 1.38237 * 120.00169 * 202.67120 * 4 2 1 6 6 C 1.38232 * 119.99994 * 179.77031 * 5 4 2 7 7 C 1.38233 * 119.99927 * 0.50451 * 6 5 4 8 8 C 1.38235 * 120.00002 * 359.74774 * 7 6 5 9 9 C 1.38233 * 119.99887 * 22.94602 * 4 2 1 10 10 N 1.46900 * 109.46788 * 119.99991 * 2 1 3 11 11 C 1.46957 * 111.00334 * 288.69530 * 10 2 1 12 12 C 1.53052 * 109.36510 * 183.19172 * 11 10 2 13 13 N 1.46951 * 109.36311 * 301.59512 * 12 11 10 14 14 C 1.46899 * 111.00293 * 183.18996 * 13 12 11 15 15 H 1.08997 * 109.47671 * 188.27939 * 14 13 12 16 16 C 1.52998 * 109.46767 * 308.27918 * 14 13 12 17 17 C 1.53001 * 109.46818 * 68.27610 * 14 13 12 18 18 C 1.52995 * 109.47073 * 62.86922 * 17 14 13 19 19 C 1.50707 * 109.47105 * 183.83883 * 18 17 14 20 20 H 1.08000 * 119.99830 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99930 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99895 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00104 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47337 * 89.99591 * 23 21 19 25 25 H 1.48499 * 109.47206 * 209.99789 * 23 21 19 26 26 H 1.48511 * 109.46984 * 329.99554 * 23 21 19 27 27 C 1.46964 * 110.88178 * 59.32530 * 13 12 11 28 28 C 1.46963 * 111.00162 * 52.49641 * 10 2 1 29 29 H 1.09003 * 109.46911 * 60.00237 * 1 2 3 30 30 H 1.09004 * 109.47000 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47641 * 300.00145 * 1 2 3 32 32 H 1.08003 * 119.99405 * 359.97438 * 5 4 2 33 33 H 1.08000 * 119.99902 * 180.23169 * 6 5 4 34 34 H 1.08000 * 119.99802 * 179.73079 * 7 6 5 35 35 H 1.08000 * 119.99973 * 179.97438 * 8 7 6 36 36 H 1.07997 * 120.00300 * 0.02562 * 9 4 2 37 37 H 1.08994 * 109.48712 * 63.21666 * 11 10 2 38 38 H 1.09003 * 109.48605 * 303.15668 * 11 10 2 39 39 H 1.08999 * 109.48285 * 181.62784 * 12 11 10 40 40 H 1.08993 * 109.48921 * 61.56552 * 12 11 10 41 41 H 1.09003 * 109.46893 * 179.97438 * 16 14 13 42 42 H 1.09004 * 109.47580 * 60.00261 * 16 14 13 43 43 H 1.08997 * 109.47482 * 299.99447 * 16 14 13 44 44 H 1.09003 * 109.46813 * 182.86703 * 17 14 13 45 45 H 1.08999 * 109.47411 * 302.86375 * 17 14 13 46 46 H 1.09007 * 109.47196 * 303.83599 * 18 17 14 47 47 H 1.08993 * 109.47677 * 63.83898 * 18 17 14 48 48 H 0.96993 * 120.00155 * 180.02562 * 22 21 19 49 49 H 1.08993 * 109.48940 * 60.64366 * 27 13 12 50 50 H 1.08997 * 109.49237 * 180.71551 * 27 13 12 51 51 H 1.08995 * 109.48590 * 296.77959 * 28 10 2 52 52 H 1.09002 * 109.49042 * 56.84033 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 3.3042 -1.2518 -1.2452 6 6 3.7633 -1.9076 -2.3722 7 6 2.9543 -2.0129 -3.4881 8 6 1.6843 -1.4671 -3.4752 9 6 1.2234 -0.8158 -2.3464 10 7 2.0196 -0.6925 1.1995 11 6 1.7805 0.1113 2.4062 12 6 2.3745 -0.6068 3.6203 13 7 1.7625 -1.9368 3.7472 14 6 2.2520 -2.6294 4.9466 15 1 1.9001 -3.6609 4.9397 16 6 3.7819 -2.6126 4.9564 17 6 1.7262 -1.9194 6.1958 18 6 0.1986 -1.9984 6.2223 19 6 -0.3244 -1.2190 7.4014 20 1 0.3641 -0.7179 8.0657 21 6 -1.6818 -1.1459 7.6322 22 7 -2.1381 -0.4662 8.6614 23 14 -2.8725 -2.0133 6.4837 24 1 -3.1152 -3.3942 6.9730 25 1 -4.1566 -1.2683 6.4472 26 1 -2.2924 -2.0669 5.1176 27 6 2.0015 -2.7408 2.5405 28 6 1.4076 -2.0226 1.3264 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.9380 -1.1652 -0.3750 33 1 4.7556 -2.3337 -2.3823 34 1 3.3146 -2.5215 -4.3701 35 1 1.0525 -1.5490 -4.3472 36 1 0.2315 -0.3887 -2.3366 37 1 0.7080 0.2419 2.5496 38 1 2.2539 1.0867 2.2931 39 1 2.1730 -0.0263 4.5206 40 1 3.4513 -0.7130 3.4891 41 1 4.1452 -3.1261 5.8466 42 1 4.1340 -1.5810 4.9634 43 1 4.1565 -3.1184 4.0665 44 1 2.1306 -2.4023 7.0854 45 1 2.0358 -0.8744 6.1772 46 1 -0.2032 -1.5766 5.3009 47 1 -0.1100 -3.0401 6.3097 48 1 -3.0930 -0.4150 8.8240 49 1 3.0741 -2.8712 2.3970 50 1 1.5281 -3.7160 2.6535 51 1 0.3308 -1.9164 1.4575 52 1 1.6090 -2.6031 0.4261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172503156.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:43 Heat of formation + Delta-G solvation = 16.738770 kcal Electronic energy + Delta-G solvation = -27481.895753 eV Core-core repulsion = 24059.253638 eV Total energy + Delta-G solvation = -3422.642116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.19137 -39.93050 -37.98352 -35.50069 -34.18938 -32.60552 -31.90463 -31.64023 -30.79023 -29.54126 -27.27833 -26.80057 -24.73082 -24.34193 -23.11410 -22.84592 -21.80482 -20.83514 -19.79276 -18.80592 -17.94695 -17.29551 -16.72448 -16.31722 -16.14954 -15.85750 -15.73213 -15.50486 -15.29352 -15.05621 -14.83788 -14.56548 -14.31527 -14.21047 -14.06462 -13.89452 -13.53134 -13.29014 -13.19357 -13.02737 -12.81547 -12.75218 -12.63833 -12.55882 -12.24164 -11.99624 -11.85000 -11.82046 -11.65345 -11.55011 -11.41359 -11.34740 -11.32116 -10.98909 -10.71869 -9.72586 -9.53761 -9.31845 -8.99163 -8.26408 -6.27829 0.51407 0.60104 1.34880 1.37111 1.51695 2.38696 2.82299 3.02608 3.04781 3.10302 3.73272 3.91051 3.95411 4.05933 4.20774 4.23482 4.25636 4.29452 4.33220 4.37255 4.38738 4.41501 4.47176 4.51743 4.59113 4.64194 4.72838 4.78971 4.79613 4.86872 4.89612 4.94617 4.94839 4.98963 5.05093 5.08884 5.14687 5.19242 5.25127 5.26734 5.28678 5.41116 5.60495 5.65420 5.70954 5.71744 5.74157 5.78490 6.05257 6.11028 6.21535 6.31610 6.34565 6.36650 6.80862 7.36427 8.90768 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.003258 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.084768 B = 8591.948689 C = 9474.153274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.122 3.878 3 H 0.095 0.905 4 C -0.084 4.084 5 C -0.103 4.103 6 C -0.133 4.133 7 C -0.130 4.130 8 C -0.130 4.130 9 C -0.129 4.129 10 N -0.523 5.523 11 C 0.060 3.940 12 C 0.060 3.940 13 N -0.543 5.543 14 C 0.087 3.913 15 H 0.076 0.924 16 C -0.172 4.172 17 C -0.086 4.086 18 C 0.004 3.996 19 C -0.525 4.525 20 H 0.028 0.972 21 C 0.003 3.997 22 N -0.956 5.956 23 Si 0.950 3.050 24 H -0.269 1.269 25 H -0.286 1.286 26 H -0.249 1.249 27 C 0.061 3.939 28 C 0.065 3.935 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.028 0.972 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.045 0.955 46 H 0.026 0.974 47 H 0.004 0.996 48 H 0.264 0.736 49 H 0.046 0.954 50 H 0.076 0.924 51 H 0.031 0.969 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.052 -3.188 -26.936 29.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.014 3.986 3 H 0.113 0.887 4 C -0.084 4.084 5 C -0.122 4.122 6 C -0.151 4.151 7 C -0.148 4.148 8 C -0.148 4.148 9 C -0.147 4.147 10 N -0.247 5.247 11 C -0.068 4.068 12 C -0.068 4.068 13 N -0.268 5.268 14 C -0.022 4.022 15 H 0.094 0.906 16 C -0.230 4.230 17 C -0.124 4.124 18 C -0.034 4.034 19 C -0.564 4.564 20 H 0.047 0.953 21 C -0.193 4.193 22 N -0.597 5.597 23 Si 0.774 3.226 24 H -0.194 1.194 25 H -0.212 1.212 26 H -0.173 1.173 27 C -0.067 4.067 28 C -0.064 4.064 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.143 0.857 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.046 0.954 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.045 0.955 47 H 0.023 0.977 48 H 0.073 0.927 49 H 0.065 0.935 50 H 0.094 0.906 51 H 0.049 0.951 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.907 -3.138 -26.838 29.528 hybrid contribution -0.926 -0.015 0.457 1.033 sum 10.981 -3.152 -26.381 28.748 Atomic orbital electron populations 1.22466 0.96610 1.02336 1.02588 1.20526 0.92951 0.97493 0.87670 0.88687 1.19822 0.94745 0.99234 0.94611 1.21125 0.95578 0.97206 0.98255 1.21420 1.00613 0.99596 0.93444 1.21436 0.94494 0.99964 0.98926 1.21383 0.96586 0.98308 0.98547 1.21328 1.00174 1.00011 0.93183 1.62388 1.57501 1.02881 1.01893 1.22135 0.98902 0.96773 0.88983 1.22108 0.97066 0.90190 0.97430 1.62243 1.58830 1.03296 1.02413 1.21671 0.93315 0.97561 0.89610 0.90557 1.22331 0.96049 1.02239 1.02403 1.21382 0.95993 0.99238 0.95743 1.19336 0.94296 0.94752 0.94977 1.21631 0.92219 1.31318 1.11190 0.95324 1.25971 1.00553 0.95963 0.96802 1.70078 1.14390 1.44244 1.31000 0.85657 0.77658 0.78629 0.80680 1.19407 1.21225 1.17287 1.22134 0.99366 0.96347 0.88868 1.22073 0.96510 0.90211 0.97571 0.90260 0.92539 0.93141 0.85750 0.84902 0.84507 0.84532 0.85112 0.95352 0.89161 0.91635 0.93080 0.91739 0.92413 0.91781 0.93162 0.93593 0.95516 0.97750 0.92730 0.93538 0.90609 0.95079 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 7.49 71.98 0.54 -2.95 16 2 C 0.12 2.34 2.71 44.17 0.12 2.46 16 3 H 0.10 1.76 8.00 -2.39 -0.02 1.74 16 4 C -0.08 -1.55 4.54 -19.87 -0.09 -1.64 16 5 C -0.10 -1.91 8.87 22.27 0.20 -1.71 16 6 C -0.13 -2.12 10.05 22.27 0.22 -1.89 16 7 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 8 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 9 C -0.13 -2.16 9.13 22.27 0.20 -1.95 16 10 N -0.52 -11.45 3.82 -874.86 -3.34 -14.79 16 11 C 0.06 1.50 5.35 86.31 0.46 1.96 16 12 C 0.06 1.67 4.70 86.31 0.41 2.08 16 13 N -0.54 -16.26 3.94 -870.50 -3.43 -19.68 16 14 C 0.09 2.66 2.32 44.92 0.10 2.76 16 15 H 0.08 2.33 7.99 -2.39 -0.02 2.31 16 16 C -0.17 -4.21 8.40 71.98 0.60 -3.61 16 17 C -0.09 -3.38 4.56 30.59 0.14 -3.24 16 18 C 0.00 0.19 3.96 29.85 0.12 0.30 16 19 C -0.53 -31.35 9.66 25.60 0.25 -31.11 16 20 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 21 C 0.00 0.18 5.47 84.66 0.46 0.64 16 22 N -0.96 -61.79 13.96 21.45 0.30 -61.49 16 23 Si 0.95 46.56 27.47 68.60 1.88 48.44 16 24 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.25 -11.64 6.54 99.48 0.65 -10.98 16 27 C 0.06 1.50 5.36 86.31 0.46 1.97 16 28 C 0.06 1.51 4.66 86.31 0.40 1.91 16 29 H 0.08 1.23 6.61 -2.39 -0.02 1.22 16 30 H 0.06 1.18 6.39 -2.38 -0.02 1.16 16 31 H 0.05 1.11 6.81 -2.39 -0.02 1.09 16 32 H 0.12 2.40 7.63 -2.91 -0.02 2.38 16 33 H 0.13 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.13 1.88 6.02 -2.91 -0.02 1.87 16 37 H 0.03 0.82 6.81 -2.39 -0.02 0.81 16 38 H 0.09 1.95 8.06 -2.39 -0.02 1.93 16 39 H 0.07 2.10 6.37 -2.39 -0.02 2.08 16 40 H 0.05 1.31 6.41 -2.39 -0.02 1.29 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.06 1.43 6.39 -2.39 -0.02 1.41 16 43 H 0.06 1.39 6.84 -2.39 -0.02 1.37 16 44 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.05 1.87 6.45 -2.39 -0.02 1.85 16 46 H 0.03 1.32 6.64 -2.38 -0.02 1.31 16 47 H 0.00 0.20 7.57 -2.39 -0.02 0.18 16 48 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 49 H 0.05 1.08 6.84 -2.39 -0.02 1.06 16 50 H 0.08 1.83 8.05 -2.39 -0.02 1.81 16 51 H 0.03 0.84 6.41 -2.39 -0.02 0.82 16 52 H 0.08 1.79 6.95 -2.39 -0.02 1.78 16 Total: -1.00 -67.85 383.23 1.29 -66.56 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.82 Total: 18.38 kcal Atomic # 6 Polarization: -42.47 SS G_CDS: 5.05 Total: -37.42 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -6.47 Total: -95.96 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.88 Total: 48.44 kcal Total: -67.85 1.29 -66.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503156.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.303 kcal (2) G-P(sol) polarization free energy of solvation -67.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds