Wall clock time and date at job start Tue Mar 31 2020 11:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47573 * 2 1 4 4 C 1.53004 * 109.47177 * 240.00028 * 2 1 3 5 5 C 1.53001 * 109.47262 * 174.99826 * 4 2 1 6 6 C 1.50700 * 109.46923 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00128 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99660 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00344 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99820 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47108 * 59.99966 * 10 8 6 12 12 H 1.48501 * 109.46857 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47077 * 299.99934 * 10 8 6 14 14 N 1.46900 * 109.47208 * 120.00344 * 2 1 3 15 15 C 1.46956 * 110.99651 * 294.99784 * 14 2 1 16 16 C 1.53049 * 109.36485 * 183.18969 * 15 14 2 17 17 N 1.46965 * 109.36163 * 301.59891 * 16 15 14 18 18 C 1.46905 * 110.99564 * 183.18812 * 17 16 15 19 19 H 1.09002 * 109.47232 * 298.34465 * 18 17 16 20 20 C 1.53002 * 109.46730 * 178.34470 * 18 17 16 21 21 C 1.50700 * 109.47353 * 58.34849 * 18 17 16 22 22 C 1.38232 * 120.00235 * 46.18407 * 21 18 17 23 23 C 1.38230 * 119.99939 * 179.76540 * 22 21 18 24 24 C 1.38231 * 120.00139 * 0.51185 * 23 22 21 25 25 C 1.38240 * 119.99757 * 359.74404 * 24 23 22 26 26 C 1.38228 * 120.00147 * 359.97438 * 25 24 23 27 27 C 1.46952 * 110.87816 * 59.32154 * 17 16 15 28 28 C 1.46955 * 111.00068 * 58.79707 * 14 2 1 29 29 H 1.08999 * 109.47058 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46868 * 299.99907 * 1 2 3 31 31 H 1.08996 * 109.46917 * 59.99808 * 1 2 3 32 32 H 1.08993 * 109.46839 * 295.00505 * 4 2 1 33 33 H 1.09001 * 109.46811 * 54.99771 * 4 2 1 34 34 H 1.08994 * 109.47131 * 300.00554 * 5 4 2 35 35 H 1.09003 * 109.46351 * 60.00185 * 5 4 2 36 36 H 0.96996 * 120.00102 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.49496 * 63.22295 * 15 14 2 38 38 H 1.09005 * 109.50869 * 303.16684 * 15 14 2 39 39 H 1.09003 * 109.49201 * 181.63379 * 16 15 14 40 40 H 1.08997 * 109.51108 * 61.57564 * 16 15 14 41 41 H 1.08993 * 109.47462 * 299.99870 * 20 18 17 42 42 H 1.09007 * 109.47136 * 60.00206 * 20 18 17 43 43 H 1.09002 * 109.47143 * 179.97438 * 20 18 17 44 44 H 1.08002 * 119.99663 * 359.97438 * 22 21 18 45 45 H 1.08002 * 119.99666 * 180.23484 * 23 22 21 46 46 H 1.08002 * 120.00389 * 179.72405 * 24 23 22 47 47 H 1.07999 * 119.99592 * 179.97438 * 25 24 23 48 48 H 1.08000 * 120.00311 * 179.97438 * 26 25 24 49 49 H 1.08995 * 109.49262 * 60.64719 * 27 17 16 50 50 H 1.09004 * 109.48562 * 180.71137 * 27 17 16 51 51 H 1.09001 * 109.48778 * 296.77750 * 28 14 2 52 52 H 1.08994 * 109.49195 * 56.82414 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5649 -0.6133 -1.3138 6 6 4.0671 -1.3232 -2.5446 7 1 3.3686 -1.8037 -3.2136 8 6 5.4183 -1.3601 -2.8159 9 7 6.2690 -0.7754 -2.0009 10 14 6.0410 -2.2406 -4.3412 11 1 5.4492 -1.6143 -5.5506 12 1 7.5211 -2.1368 -4.4032 13 1 5.6477 -3.6714 -4.2820 14 7 2.0197 -0.6926 1.1994 15 6 1.6486 0.0394 2.4185 16 6 2.2436 -0.6699 3.6372 17 7 1.7490 -2.0530 3.6856 18 6 2.2387 -2.7455 4.8851 19 1 3.3275 -2.7900 4.8598 20 6 1.6708 -4.1657 4.9215 21 6 1.7950 -1.9954 6.1145 22 6 0.4874 -1.5606 6.2246 23 6 0.0792 -0.8769 7.3545 24 6 0.9812 -0.6187 8.3697 25 6 2.2901 -1.0489 8.2572 26 6 2.6969 -1.7377 7.1300 27 6 2.1201 -2.7848 2.4665 28 6 1.5252 -2.0755 1.2478 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7516 -1.7714 -1.2056 33 1 1.6054 -0.2617 -2.1370 34 1 3.8532 0.4369 -1.3573 35 1 3.9994 -1.0728 -0.4260 36 1 7.2196 -0.8011 -2.1920 37 1 0.5628 0.0685 2.5089 38 1 2.0364 1.0567 2.3645 39 1 1.9455 -0.1452 4.5449 40 1 3.3309 -0.6750 3.5606 41 1 0.5821 -4.1212 4.9467 42 1 1.9918 -4.7083 4.0322 43 1 2.0345 -4.6797 5.8112 44 1 -0.2160 -1.7581 5.4292 45 1 -0.9433 -0.5405 7.4421 46 1 0.6634 -0.0805 9.2505 47 1 2.9949 -0.8468 9.0502 48 1 3.7196 -2.0735 7.0419 49 1 3.2059 -2.8140 2.3761 50 1 1.7320 -3.8020 2.5207 51 1 0.4379 -2.0704 1.3249 52 1 1.8229 -2.6002 0.3400 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172503160.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:46 Heat of formation + Delta-G solvation = 28.558885 kcal Electronic energy + Delta-G solvation = -27270.517598 eV Core-core repulsion = 23848.388041 eV Total energy + Delta-G solvation = -3422.129557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.12165 -38.92278 -36.76017 -33.77833 -32.61549 -31.18157 -31.02215 -30.46052 -29.37462 -28.66391 -25.77989 -24.87606 -23.90039 -22.91230 -22.44921 -21.45564 -20.50529 -19.86515 -18.67389 -17.04511 -16.42063 -16.09195 -15.62383 -15.21165 -14.84134 -14.62851 -14.42394 -14.33837 -14.20971 -14.05568 -13.49202 -13.35049 -13.17183 -12.93853 -12.65189 -12.49797 -12.30060 -12.02244 -11.82437 -11.62706 -11.49916 -11.46930 -11.31829 -11.17291 -11.05169 -10.86553 -10.79924 -10.54903 -10.45163 -10.29828 -9.98747 -9.56681 -9.17946 -9.03268 -8.88476 -8.81944 -8.28947 -8.22965 -7.69342 -5.88277 -3.89872 1.21380 1.29664 3.37983 3.42396 3.44738 3.62485 3.92916 4.31268 4.53417 4.53741 4.77870 4.86688 5.00052 5.07356 5.14579 5.17610 5.29087 5.36423 5.45565 5.46778 5.47532 5.52479 5.54757 5.62711 5.63815 5.64954 5.72011 5.77211 5.82253 5.88660 5.95217 5.99669 6.06282 6.15983 6.16844 6.24521 6.30698 6.34189 6.37136 6.39830 6.46073 6.51679 6.69820 6.87640 6.90924 7.12033 7.13599 7.30142 7.59474 7.64040 7.85111 8.07455 8.22377 8.57129 9.19096 9.72790 11.22569 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018729 B = 0.002860 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.672295 B = 9787.839822 C =10334.443493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.082 3.918 3 H 0.076 0.924 4 C -0.103 4.103 5 C 0.031 3.969 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.519 5.519 15 C 0.058 3.942 16 C 0.059 3.941 17 N -0.531 5.531 18 C 0.118 3.882 19 H 0.048 0.952 20 C -0.142 4.142 21 C -0.073 4.073 22 C -0.091 4.091 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.117 4.117 27 C 0.054 3.946 28 C 0.056 3.944 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.009 0.991 35 H 0.030 0.970 36 H 0.258 0.742 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.128 0.872 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.046 0.954 50 H 0.078 0.922 51 H 0.037 0.963 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.471 -1.890 20.001 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.026 4.026 3 H 0.094 0.906 4 C -0.141 4.141 5 C -0.006 4.006 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.243 5.243 15 C -0.070 4.070 16 C -0.069 4.069 17 N -0.256 5.256 18 C 0.010 3.990 19 H 0.066 0.934 20 C -0.199 4.199 21 C -0.073 4.073 22 C -0.109 4.109 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.141 4.141 26 C -0.135 4.135 27 C -0.073 4.073 28 C -0.072 4.072 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.146 0.854 45 H 0.137 0.863 46 H 0.135 0.865 47 H 0.137 0.863 48 H 0.137 0.863 49 H 0.064 0.936 50 H 0.097 0.903 51 H 0.055 0.945 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.262 -1.862 20.010 23.543 hybrid contribution 0.493 -0.357 -0.821 1.022 sum -11.769 -2.219 19.189 22.620 Atomic orbital electron populations 1.22485 0.98872 1.01627 1.01240 1.21844 0.91092 0.98579 0.91084 0.90571 1.21747 1.00773 0.98306 0.93293 1.18978 0.88081 0.96676 0.96854 1.21305 0.91817 1.34176 1.08498 0.93191 1.24994 0.97143 0.95773 0.96450 1.69969 1.02203 1.44282 1.36916 0.86757 0.77595 0.80273 0.83914 1.20402 1.21411 1.20395 1.62296 1.58998 1.01667 1.01313 1.22105 0.98039 0.97294 0.89608 1.22137 0.98128 0.88748 0.97869 1.62261 1.59501 1.02382 1.01446 1.20531 0.97164 0.93400 0.87890 0.93365 1.21882 1.01901 0.94283 1.01853 1.19791 0.94053 0.98343 0.95124 1.21044 0.95757 0.96866 0.97226 1.21178 0.99530 0.99498 0.94185 1.21127 0.93780 1.00419 0.98986 1.21074 0.96177 0.98937 0.97925 1.21069 0.99290 0.99202 0.93972 1.22254 0.99373 0.97080 0.88642 1.22185 0.97042 0.90070 0.97906 0.92682 0.93383 0.92463 0.93309 0.93344 0.97303 0.95170 0.93190 0.94472 0.90834 0.90755 0.93975 0.91706 0.91832 0.92300 0.85394 0.86336 0.86473 0.86324 0.86338 0.93572 0.90332 0.94511 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 8.49 37.16 0.32 -2.30 16 2 C 0.08 1.42 2.35 -67.71 -0.16 1.26 16 3 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 4 C -0.10 -2.14 4.45 -26.73 -0.12 -2.26 16 5 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16 6 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 7 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.45 13.29 55.43 0.74 -26.71 16 10 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 N -0.52 -8.70 4.15 -226.49 -0.94 -9.64 16 15 C 0.06 0.84 5.25 -3.77 -0.02 0.82 16 16 C 0.06 0.80 5.30 -3.76 -0.02 0.78 16 17 N -0.53 -6.67 4.09 -227.87 -0.93 -7.60 16 18 C 0.12 1.32 2.27 -68.86 -0.16 1.16 16 19 H 0.05 0.58 7.94 -51.93 -0.41 0.16 16 20 C -0.14 -1.37 8.83 37.16 0.33 -1.04 16 21 C -0.07 -0.77 3.55 -104.62 -0.37 -1.15 16 22 C -0.09 -0.94 8.58 -39.59 -0.34 -1.28 16 23 C -0.13 -1.17 10.05 -39.59 -0.40 -1.56 16 24 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 25 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 26 C -0.12 -1.17 9.67 -39.59 -0.38 -1.55 16 27 C 0.05 0.75 5.27 -3.77 -0.02 0.73 16 28 C 0.06 0.86 4.82 -3.77 -0.02 0.85 16 29 H 0.05 0.78 6.45 -51.93 -0.34 0.44 16 30 H 0.05 0.63 6.59 -51.93 -0.34 0.29 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.99 6.11 -51.93 -0.32 0.67 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.03 0.85 7.75 -51.93 -0.40 0.45 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.04 0.52 6.60 -51.93 -0.34 0.17 16 38 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 39 H 0.07 0.95 6.50 -51.93 -0.34 0.61 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 42 H 0.06 0.61 6.30 -51.93 -0.33 0.28 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.13 1.35 7.91 -52.49 -0.42 0.94 16 45 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 48 H 0.12 1.07 7.99 -52.49 -0.42 0.65 16 49 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.08 0.95 6.09 -51.93 -0.32 0.64 16 51 H 0.04 0.54 6.46 -51.93 -0.34 0.20 16 52 H 0.09 1.53 6.07 -51.93 -0.32 1.21 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -30.58 392.94 -12.16 -42.74 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -9.23 Total: -0.16 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -2.70 Total: -21.57 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -1.14 Total: -43.95 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.58 -12.16 -42.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503160.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.301 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds