Wall clock time and date at job start Tue Mar 31 2020 11:35:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08998 * 109.47573 * 2 1
4 4 C 1.53004 * 109.47177 * 240.00028 * 2 1 3
5 5 C 1.53001 * 109.47262 * 174.99826 * 4 2 1
6 6 C 1.50700 * 109.46923 * 180.02562 * 5 4 2
7 7 H 1.08000 * 120.00128 * 359.97438 * 6 5 4
8 8 C 1.37873 * 119.99660 * 180.02562 * 6 5 4
9 9 N 1.31515 * 120.00344 * 359.97438 * 8 6 5
10 10 Si 1.86807 * 119.99820 * 179.97438 * 8 6 5
11 11 H 1.48499 * 109.47108 * 59.99966 * 10 8 6
12 12 H 1.48501 * 109.46857 * 180.02562 * 10 8 6
13 13 H 1.48496 * 109.47077 * 299.99934 * 10 8 6
14 14 N 1.46900 * 109.47208 * 120.00344 * 2 1 3
15 15 C 1.46956 * 110.99651 * 294.99784 * 14 2 1
16 16 C 1.53049 * 109.36485 * 183.18969 * 15 14 2
17 17 N 1.46965 * 109.36163 * 301.59891 * 16 15 14
18 18 C 1.46905 * 110.99564 * 183.18812 * 17 16 15
19 19 H 1.09002 * 109.47232 * 298.34465 * 18 17 16
20 20 C 1.53002 * 109.46730 * 178.34470 * 18 17 16
21 21 C 1.50700 * 109.47353 * 58.34849 * 18 17 16
22 22 C 1.38232 * 120.00235 * 46.18407 * 21 18 17
23 23 C 1.38230 * 119.99939 * 179.76540 * 22 21 18
24 24 C 1.38231 * 120.00139 * 0.51185 * 23 22 21
25 25 C 1.38240 * 119.99757 * 359.74404 * 24 23 22
26 26 C 1.38228 * 120.00147 * 359.97438 * 25 24 23
27 27 C 1.46952 * 110.87816 * 59.32154 * 17 16 15
28 28 C 1.46955 * 111.00068 * 58.79707 * 14 2 1
29 29 H 1.08999 * 109.47058 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.46868 * 299.99907 * 1 2 3
31 31 H 1.08996 * 109.46917 * 59.99808 * 1 2 3
32 32 H 1.08993 * 109.46839 * 295.00505 * 4 2 1
33 33 H 1.09001 * 109.46811 * 54.99771 * 4 2 1
34 34 H 1.08994 * 109.47131 * 300.00554 * 5 4 2
35 35 H 1.09003 * 109.46351 * 60.00185 * 5 4 2
36 36 H 0.96996 * 120.00102 * 180.02562 * 9 8 6
37 37 H 1.08998 * 109.49496 * 63.22295 * 15 14 2
38 38 H 1.09005 * 109.50869 * 303.16684 * 15 14 2
39 39 H 1.09003 * 109.49201 * 181.63379 * 16 15 14
40 40 H 1.08997 * 109.51108 * 61.57564 * 16 15 14
41 41 H 1.08993 * 109.47462 * 299.99870 * 20 18 17
42 42 H 1.09007 * 109.47136 * 60.00206 * 20 18 17
43 43 H 1.09002 * 109.47143 * 179.97438 * 20 18 17
44 44 H 1.08002 * 119.99663 * 359.97438 * 22 21 18
45 45 H 1.08002 * 119.99666 * 180.23484 * 23 22 21
46 46 H 1.08002 * 120.00389 * 179.72405 * 24 23 22
47 47 H 1.07999 * 119.99592 * 179.97438 * 25 24 23
48 48 H 1.08000 * 120.00311 * 179.97438 * 26 25 24
49 49 H 1.08995 * 109.49262 * 60.64719 * 27 17 16
50 50 H 1.09004 * 109.48562 * 180.71137 * 27 17 16
51 51 H 1.09001 * 109.48778 * 296.77750 * 28 14 2
52 52 H 1.08994 * 109.49195 * 56.82414 * 28 14 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 -1.2493
5 6 3.5649 -0.6133 -1.3138
6 6 4.0671 -1.3232 -2.5446
7 1 3.3686 -1.8037 -3.2136
8 6 5.4183 -1.3601 -2.8159
9 7 6.2690 -0.7754 -2.0009
10 14 6.0410 -2.2406 -4.3412
11 1 5.4492 -1.6143 -5.5506
12 1 7.5211 -2.1368 -4.4032
13 1 5.6477 -3.6714 -4.2820
14 7 2.0197 -0.6926 1.1994
15 6 1.6486 0.0394 2.4185
16 6 2.2436 -0.6699 3.6372
17 7 1.7490 -2.0530 3.6856
18 6 2.2387 -2.7455 4.8851
19 1 3.3275 -2.7900 4.8598
20 6 1.6708 -4.1657 4.9215
21 6 1.7950 -1.9954 6.1145
22 6 0.4874 -1.5606 6.2246
23 6 0.0792 -0.8769 7.3545
24 6 0.9812 -0.6187 8.3697
25 6 2.2901 -1.0489 8.2572
26 6 2.6969 -1.7377 7.1300
27 6 2.1201 -2.7848 2.4665
28 6 1.5252 -2.0755 1.2478
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8899
32 1 1.7516 -1.7714 -1.2056
33 1 1.6054 -0.2617 -2.1370
34 1 3.8532 0.4369 -1.3573
35 1 3.9994 -1.0728 -0.4260
36 1 7.2196 -0.8011 -2.1920
37 1 0.5628 0.0685 2.5089
38 1 2.0364 1.0567 2.3645
39 1 1.9455 -0.1452 4.5449
40 1 3.3309 -0.6750 3.5606
41 1 0.5821 -4.1212 4.9467
42 1 1.9918 -4.7083 4.0322
43 1 2.0345 -4.6797 5.8112
44 1 -0.2160 -1.7581 5.4292
45 1 -0.9433 -0.5405 7.4421
46 1 0.6634 -0.0805 9.2505
47 1 2.9949 -0.8468 9.0502
48 1 3.7196 -2.0735 7.0419
49 1 3.2059 -2.8140 2.3761
50 1 1.7320 -3.8020 2.5207
51 1 0.4379 -2.0704 1.3249
52 1 1.8229 -2.6002 0.3400
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001172503160.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:35:46
Heat of formation + Delta-G solvation = 28.558885 kcal
Electronic energy + Delta-G solvation = -27270.517598 eV
Core-core repulsion = 23848.388041 eV
Total energy + Delta-G solvation = -3422.129557 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-40.12165 -38.92278 -36.76017 -33.77833 -32.61549 -31.18157 -31.02215 -30.46052
-29.37462 -28.66391 -25.77989 -24.87606 -23.90039 -22.91230 -22.44921 -21.45564
-20.50529 -19.86515 -18.67389 -17.04511 -16.42063 -16.09195 -15.62383 -15.21165
-14.84134 -14.62851 -14.42394 -14.33837 -14.20971 -14.05568 -13.49202 -13.35049
-13.17183 -12.93853 -12.65189 -12.49797 -12.30060 -12.02244 -11.82437 -11.62706
-11.49916 -11.46930 -11.31829 -11.17291 -11.05169 -10.86553 -10.79924 -10.54903
-10.45163 -10.29828 -9.98747 -9.56681 -9.17946 -9.03268 -8.88476 -8.81944
-8.28947 -8.22965 -7.69342 -5.88277 -3.89872 1.21380 1.29664 3.37983
3.42396 3.44738 3.62485 3.92916 4.31268 4.53417 4.53741 4.77870
4.86688 5.00052 5.07356 5.14579 5.17610 5.29087 5.36423 5.45565
5.46778 5.47532 5.52479 5.54757 5.62711 5.63815 5.64954 5.72011
5.77211 5.82253 5.88660 5.95217 5.99669 6.06282 6.15983 6.16844
6.24521 6.30698 6.34189 6.37136 6.39830 6.46073 6.51679 6.69820
6.87640 6.90924 7.12033 7.13599 7.30142 7.59474 7.64040 7.85111
8.07455 8.22377 8.57129 9.19096 9.72790 11.22569
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.018729 B = 0.002860 C = 0.002709
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1494.672295 B = 9787.839822 C =10334.443493
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.082 3.918
3 H 0.076 0.924
4 C -0.103 4.103
5 C 0.031 3.969
6 C -0.519 4.519
7 H 0.050 0.950
8 C 0.057 3.943
9 N -0.894 5.894
10 Si 0.886 3.114
11 H -0.278 1.278
12 H -0.288 1.288
13 H -0.278 1.278
14 N -0.519 5.519
15 C 0.058 3.942
16 C 0.059 3.941
17 N -0.531 5.531
18 C 0.118 3.882
19 H 0.048 0.952
20 C -0.142 4.142
21 C -0.073 4.073
22 C -0.091 4.091
23 C -0.126 4.126
24 C -0.125 4.125
25 C -0.123 4.123
26 C -0.117 4.117
27 C 0.054 3.946
28 C 0.056 3.944
29 H 0.054 0.946
30 H 0.047 0.953
31 H 0.056 0.944
32 H 0.048 0.952
33 H 0.048 0.952
34 H 0.009 0.991
35 H 0.030 0.970
36 H 0.258 0.742
37 H 0.037 0.963
38 H 0.073 0.927
39 H 0.074 0.926
40 H 0.042 0.958
41 H 0.064 0.936
42 H 0.063 0.937
43 H 0.058 0.942
44 H 0.128 0.872
45 H 0.119 0.881
46 H 0.117 0.883
47 H 0.119 0.881
48 H 0.119 0.881
49 H 0.046 0.954
50 H 0.078 0.922
51 H 0.037 0.963
52 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.471 -1.890 20.001 23.646
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.242 4.242
2 C -0.026 4.026
3 H 0.094 0.906
4 C -0.141 4.141
5 C -0.006 4.006
6 C -0.558 4.558
7 H 0.068 0.932
8 C -0.144 4.144
9 N -0.534 5.534
10 Si 0.715 3.285
11 H -0.204 1.204
12 H -0.214 1.214
13 H -0.204 1.204
14 N -0.243 5.243
15 C -0.070 4.070
16 C -0.069 4.069
17 N -0.256 5.256
18 C 0.010 3.990
19 H 0.066 0.934
20 C -0.199 4.199
21 C -0.073 4.073
22 C -0.109 4.109
23 C -0.144 4.144
24 C -0.143 4.143
25 C -0.141 4.141
26 C -0.135 4.135
27 C -0.073 4.073
28 C -0.072 4.072
29 H 0.073 0.927
30 H 0.066 0.934
31 H 0.075 0.925
32 H 0.067 0.933
33 H 0.067 0.933
34 H 0.027 0.973
35 H 0.048 0.952
36 H 0.068 0.932
37 H 0.055 0.945
38 H 0.092 0.908
39 H 0.092 0.908
40 H 0.060 0.940
41 H 0.083 0.917
42 H 0.082 0.918
43 H 0.077 0.923
44 H 0.146 0.854
45 H 0.137 0.863
46 H 0.135 0.865
47 H 0.137 0.863
48 H 0.137 0.863
49 H 0.064 0.936
50 H 0.097 0.903
51 H 0.055 0.945
52 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -12.262 -1.862 20.010 23.543
hybrid contribution 0.493 -0.357 -0.821 1.022
sum -11.769 -2.219 19.189 22.620
Atomic orbital electron populations
1.22485 0.98872 1.01627 1.01240 1.21844 0.91092 0.98579 0.91084
0.90571 1.21747 1.00773 0.98306 0.93293 1.18978 0.88081 0.96676
0.96854 1.21305 0.91817 1.34176 1.08498 0.93191 1.24994 0.97143
0.95773 0.96450 1.69969 1.02203 1.44282 1.36916 0.86757 0.77595
0.80273 0.83914 1.20402 1.21411 1.20395 1.62296 1.58998 1.01667
1.01313 1.22105 0.98039 0.97294 0.89608 1.22137 0.98128 0.88748
0.97869 1.62261 1.59501 1.02382 1.01446 1.20531 0.97164 0.93400
0.87890 0.93365 1.21882 1.01901 0.94283 1.01853 1.19791 0.94053
0.98343 0.95124 1.21044 0.95757 0.96866 0.97226 1.21178 0.99530
0.99498 0.94185 1.21127 0.93780 1.00419 0.98986 1.21074 0.96177
0.98937 0.97925 1.21069 0.99290 0.99202 0.93972 1.22254 0.99373
0.97080 0.88642 1.22185 0.97042 0.90070 0.97906 0.92682 0.93383
0.92463 0.93309 0.93344 0.97303 0.95170 0.93190 0.94472 0.90834
0.90755 0.93975 0.91706 0.91832 0.92300 0.85394 0.86336 0.86473
0.86324 0.86338 0.93572 0.90332 0.94511 0.89271
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.62 8.49 37.16 0.32 -2.30 16
2 C 0.08 1.42 2.35 -67.71 -0.16 1.26 16
3 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16
4 C -0.10 -2.14 4.45 -26.73 -0.12 -2.26 16
5 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16
6 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16
7 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16
8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
9 N -0.89 -27.45 13.29 55.43 0.74 -26.71 16
10 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16
11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
14 N -0.52 -8.70 4.15 -226.49 -0.94 -9.64 16
15 C 0.06 0.84 5.25 -3.77 -0.02 0.82 16
16 C 0.06 0.80 5.30 -3.76 -0.02 0.78 16
17 N -0.53 -6.67 4.09 -227.87 -0.93 -7.60 16
18 C 0.12 1.32 2.27 -68.86 -0.16 1.16 16
19 H 0.05 0.58 7.94 -51.93 -0.41 0.16 16
20 C -0.14 -1.37 8.83 37.16 0.33 -1.04 16
21 C -0.07 -0.77 3.55 -104.62 -0.37 -1.15 16
22 C -0.09 -0.94 8.58 -39.59 -0.34 -1.28 16
23 C -0.13 -1.17 10.05 -39.59 -0.40 -1.56 16
24 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16
25 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16
26 C -0.12 -1.17 9.67 -39.59 -0.38 -1.55 16
27 C 0.05 0.75 5.27 -3.77 -0.02 0.73 16
28 C 0.06 0.86 4.82 -3.77 -0.02 0.85 16
29 H 0.05 0.78 6.45 -51.93 -0.34 0.44 16
30 H 0.05 0.63 6.59 -51.93 -0.34 0.29 16
31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
32 H 0.05 0.99 6.11 -51.93 -0.32 0.67 16
33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16
35 H 0.03 0.85 7.75 -51.93 -0.40 0.45 16
36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16
37 H 0.04 0.52 6.60 -51.93 -0.34 0.17 16
38 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16
39 H 0.07 0.95 6.50 -51.93 -0.34 0.61 16
40 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16
41 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16
42 H 0.06 0.61 6.30 -51.93 -0.33 0.28 16
43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16
44 H 0.13 1.35 7.91 -52.49 -0.42 0.94 16
45 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16
46 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16
47 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16
48 H 0.12 1.07 7.99 -52.49 -0.42 0.65 16
49 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
50 H 0.08 0.95 6.09 -51.93 -0.32 0.64 16
51 H 0.04 0.54 6.46 -51.93 -0.34 0.20 16
52 H 0.09 1.53 6.07 -51.93 -0.32 1.21 16
LS Contribution 392.94 15.07 5.92 5.92
Total: -1.00 -30.58 392.94 -12.16 -42.74
By element:
Atomic # 1 Polarization: 9.07 SS G_CDS: -9.23 Total: -0.16 kcal
Atomic # 6 Polarization: -18.87 SS G_CDS: -2.70 Total: -21.57 kcal
Atomic # 7 Polarization: -42.81 SS G_CDS: -1.14 Total: -43.95 kcal
Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal
Total LS contribution 5.92 Total: 5.92 kcal
Total: -30.58 -12.16 -42.74 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172503160.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.301 kcal
(2) G-P(sol) polarization free energy of solvation -30.577 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.724 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.165 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.742 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.559 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds