Wall clock time and date at job start Tue Mar 31 2020 11:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47573 * 2 1 4 4 C 1.53004 * 109.47177 * 240.00028 * 2 1 3 5 5 C 1.53001 * 109.47262 * 174.99826 * 4 2 1 6 6 C 1.50700 * 109.46923 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00128 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99660 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00344 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99820 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47108 * 59.99966 * 10 8 6 12 12 H 1.48501 * 109.46857 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47077 * 299.99934 * 10 8 6 14 14 N 1.46900 * 109.47208 * 120.00344 * 2 1 3 15 15 C 1.46956 * 110.99651 * 294.99784 * 14 2 1 16 16 C 1.53049 * 109.36485 * 183.18969 * 15 14 2 17 17 N 1.46965 * 109.36163 * 301.59891 * 16 15 14 18 18 C 1.46905 * 110.99564 * 183.18812 * 17 16 15 19 19 H 1.09002 * 109.47232 * 298.34465 * 18 17 16 20 20 C 1.53002 * 109.46730 * 178.34470 * 18 17 16 21 21 C 1.50700 * 109.47353 * 58.34849 * 18 17 16 22 22 C 1.38232 * 120.00235 * 46.18407 * 21 18 17 23 23 C 1.38230 * 119.99939 * 179.76540 * 22 21 18 24 24 C 1.38231 * 120.00139 * 0.51185 * 23 22 21 25 25 C 1.38240 * 119.99757 * 359.74404 * 24 23 22 26 26 C 1.38228 * 120.00147 * 359.97438 * 25 24 23 27 27 C 1.46952 * 110.87816 * 59.32154 * 17 16 15 28 28 C 1.46955 * 111.00068 * 58.79707 * 14 2 1 29 29 H 1.08999 * 109.47058 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46868 * 299.99907 * 1 2 3 31 31 H 1.08996 * 109.46917 * 59.99808 * 1 2 3 32 32 H 1.08993 * 109.46839 * 295.00505 * 4 2 1 33 33 H 1.09001 * 109.46811 * 54.99771 * 4 2 1 34 34 H 1.08994 * 109.47131 * 300.00554 * 5 4 2 35 35 H 1.09003 * 109.46351 * 60.00185 * 5 4 2 36 36 H 0.96996 * 120.00102 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.49496 * 63.22295 * 15 14 2 38 38 H 1.09005 * 109.50869 * 303.16684 * 15 14 2 39 39 H 1.09003 * 109.49201 * 181.63379 * 16 15 14 40 40 H 1.08997 * 109.51108 * 61.57564 * 16 15 14 41 41 H 1.08993 * 109.47462 * 299.99870 * 20 18 17 42 42 H 1.09007 * 109.47136 * 60.00206 * 20 18 17 43 43 H 1.09002 * 109.47143 * 179.97438 * 20 18 17 44 44 H 1.08002 * 119.99663 * 359.97438 * 22 21 18 45 45 H 1.08002 * 119.99666 * 180.23484 * 23 22 21 46 46 H 1.08002 * 120.00389 * 179.72405 * 24 23 22 47 47 H 1.07999 * 119.99592 * 179.97438 * 25 24 23 48 48 H 1.08000 * 120.00311 * 179.97438 * 26 25 24 49 49 H 1.08995 * 109.49262 * 60.64719 * 27 17 16 50 50 H 1.09004 * 109.48562 * 180.71137 * 27 17 16 51 51 H 1.09001 * 109.48778 * 296.77750 * 28 14 2 52 52 H 1.08994 * 109.49195 * 56.82414 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5649 -0.6133 -1.3138 6 6 4.0671 -1.3232 -2.5446 7 1 3.3686 -1.8037 -3.2136 8 6 5.4183 -1.3601 -2.8159 9 7 6.2690 -0.7754 -2.0009 10 14 6.0410 -2.2406 -4.3412 11 1 5.4492 -1.6143 -5.5506 12 1 7.5211 -2.1368 -4.4032 13 1 5.6477 -3.6714 -4.2820 14 7 2.0197 -0.6926 1.1994 15 6 1.6486 0.0394 2.4185 16 6 2.2436 -0.6699 3.6372 17 7 1.7490 -2.0530 3.6856 18 6 2.2387 -2.7455 4.8851 19 1 3.3275 -2.7900 4.8598 20 6 1.6708 -4.1657 4.9215 21 6 1.7950 -1.9954 6.1145 22 6 0.4874 -1.5606 6.2246 23 6 0.0792 -0.8769 7.3545 24 6 0.9812 -0.6187 8.3697 25 6 2.2901 -1.0489 8.2572 26 6 2.6969 -1.7377 7.1300 27 6 2.1201 -2.7848 2.4665 28 6 1.5252 -2.0755 1.2478 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7516 -1.7714 -1.2056 33 1 1.6054 -0.2617 -2.1370 34 1 3.8532 0.4369 -1.3573 35 1 3.9994 -1.0728 -0.4260 36 1 7.2196 -0.8011 -2.1920 37 1 0.5628 0.0685 2.5089 38 1 2.0364 1.0567 2.3645 39 1 1.9455 -0.1452 4.5449 40 1 3.3309 -0.6750 3.5606 41 1 0.5821 -4.1212 4.9467 42 1 1.9918 -4.7083 4.0322 43 1 2.0345 -4.6797 5.8112 44 1 -0.2160 -1.7581 5.4292 45 1 -0.9433 -0.5405 7.4421 46 1 0.6634 -0.0805 9.2505 47 1 2.9949 -0.8468 9.0502 48 1 3.7196 -2.0735 7.0419 49 1 3.2059 -2.8140 2.3761 50 1 1.7320 -3.8020 2.5207 51 1 0.4379 -2.0704 1.3249 52 1 1.8229 -2.6002 0.3400 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172503160.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:45 Heat of formation + Delta-G solvation = 12.060831 kcal Electronic energy + Delta-G solvation = -27271.233008 eV Core-core repulsion = 23848.388041 eV Total energy + Delta-G solvation = -3422.844967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.11062 -39.94016 -37.88881 -35.51796 -34.17230 -32.42636 -31.89836 -31.68136 -30.63750 -29.76709 -27.20480 -26.51587 -24.95024 -23.85010 -23.39768 -23.05956 -21.72646 -21.01720 -19.98458 -18.36971 -17.89028 -17.41685 -16.59550 -16.50183 -16.19264 -15.92004 -15.75484 -15.55846 -15.21758 -14.98650 -14.61342 -14.44538 -14.30949 -14.16514 -14.07538 -13.76856 -13.30297 -13.24604 -13.13635 -13.12181 -12.78506 -12.74134 -12.64449 -12.43093 -12.36043 -12.31085 -11.98830 -11.83901 -11.72142 -11.57299 -11.46001 -11.31031 -11.15552 -10.89274 -10.48774 -9.75454 -9.56570 -9.39284 -8.97072 -8.13787 -6.24597 0.48123 0.57314 1.39142 1.42428 1.50082 2.43134 2.77557 3.01333 3.05052 3.18462 3.69657 3.91250 3.97708 4.03093 4.18091 4.22458 4.26465 4.29290 4.34054 4.36711 4.37440 4.44417 4.50679 4.53558 4.57443 4.69232 4.73674 4.76187 4.80680 4.85388 4.89015 4.93072 4.97351 5.02608 5.04916 5.13245 5.15455 5.17634 5.24321 5.30359 5.33688 5.47178 5.59148 5.61912 5.68894 5.71548 5.88153 6.01245 6.01872 6.09991 6.18616 6.31322 6.35886 6.37121 6.95257 7.43650 8.97275 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018729 B = 0.002860 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.672295 B = 9787.839822 C =10334.443493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.087 3.913 3 H 0.064 0.936 4 C -0.091 4.091 5 C 0.043 3.957 6 C -0.542 4.542 7 H 0.056 0.944 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.960 3.040 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.267 1.267 14 N -0.545 5.545 15 C 0.063 3.937 16 C 0.068 3.932 17 N -0.521 5.521 18 C 0.118 3.882 19 H 0.035 0.965 20 C -0.136 4.136 21 C -0.084 4.084 22 C -0.100 4.100 23 C -0.129 4.129 24 C -0.127 4.127 25 C -0.128 4.128 26 C -0.131 4.131 27 C 0.060 3.940 28 C 0.061 3.939 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.051 0.949 34 H -0.024 1.024 35 H 0.000 1.000 36 H 0.261 0.739 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.016 0.984 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.125 0.875 45 H 0.137 0.863 46 H 0.140 0.860 47 H 0.137 0.863 48 H 0.121 0.879 49 H 0.017 0.983 50 H 0.099 0.901 51 H 0.052 0.948 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.309 -2.394 20.668 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 H 0.082 0.918 4 C -0.129 4.129 5 C 0.006 3.994 6 C -0.580 4.580 7 H 0.074 0.926 8 C -0.198 4.198 9 N -0.574 5.574 10 Si 0.785 3.215 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.192 1.192 14 N -0.270 5.270 15 C -0.065 4.065 16 C -0.060 4.060 17 N -0.246 5.246 18 C 0.011 3.989 19 H 0.053 0.947 20 C -0.193 4.193 21 C -0.084 4.084 22 C -0.118 4.118 23 C -0.147 4.147 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.149 4.149 27 C -0.068 4.068 28 C -0.067 4.067 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.070 0.930 34 H -0.006 1.006 35 H 0.018 0.982 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.034 0.966 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.143 0.857 45 H 0.155 0.845 46 H 0.158 0.842 47 H 0.155 0.845 48 H 0.139 0.861 49 H 0.035 0.965 50 H 0.117 0.883 51 H 0.070 0.930 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.121 -2.370 20.684 25.156 hybrid contribution 1.104 -0.169 -0.953 1.468 sum -13.017 -2.538 19.730 23.774 Atomic orbital electron populations 1.22328 0.95802 1.02304 1.02460 1.21649 0.93381 0.97250 0.89816 0.91801 1.21551 0.96680 0.99200 0.95481 1.18773 0.91937 0.93854 0.94868 1.21764 0.92453 1.34388 1.09359 0.92568 1.25953 0.97431 0.96511 0.99947 1.70123 1.02552 1.45652 1.39040 0.85583 0.76961 0.79307 0.79672 1.19207 1.21011 1.19210 1.62221 1.60213 1.02562 1.02012 1.22099 0.98781 0.96947 0.88715 1.22034 0.96446 0.89578 0.97992 1.62304 1.58944 1.01870 1.01467 1.20568 0.96449 0.94348 0.87580 0.94737 1.21841 1.01982 0.93232 1.02292 1.19754 0.94571 0.99106 0.95003 1.21076 0.95452 0.97493 0.97786 1.21438 1.00604 0.98923 0.93766 1.21450 0.93501 0.99967 0.99600 1.21351 0.96910 0.98326 0.97965 1.21221 0.99473 0.99766 0.94445 1.22186 0.97514 0.98200 0.88890 1.22108 0.97808 0.89214 0.97544 0.92194 0.91797 0.91606 0.92904 0.93011 1.00570 0.98177 0.93079 0.93073 0.91074 0.89599 0.96577 0.91363 0.91939 0.91314 0.85707 0.84502 0.84207 0.84517 0.86119 0.96505 0.88285 0.92985 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.52 8.49 71.98 0.61 -3.91 16 2 C 0.09 3.01 2.35 44.92 0.11 3.12 16 3 H 0.06 2.35 8.11 -2.39 -0.02 2.33 16 4 C -0.09 -3.83 4.45 30.60 0.14 -3.70 16 5 C 0.04 2.34 4.86 29.85 0.15 2.49 16 6 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 7 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 8 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 9 N -0.93 -58.90 13.29 21.45 0.28 -58.62 16 10 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 14 N -0.55 -18.60 4.15 -870.48 -3.61 -22.21 16 15 C 0.06 1.78 5.25 86.31 0.45 2.24 16 16 C 0.07 1.85 5.30 86.31 0.46 2.31 16 17 N -0.52 -12.98 4.09 -874.85 -3.58 -16.55 16 18 C 0.12 2.62 2.27 44.17 0.10 2.72 16 19 H 0.03 0.86 7.94 -2.39 -0.02 0.84 16 20 C -0.14 -2.52 8.83 71.98 0.64 -1.88 16 21 C -0.08 -1.73 3.55 -19.87 -0.07 -1.80 16 22 C -0.10 -1.92 8.58 22.27 0.19 -1.73 16 23 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 24 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 25 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 26 C -0.13 -2.52 9.67 22.27 0.22 -2.31 16 27 C 0.06 1.69 5.27 86.31 0.45 2.14 16 28 C 0.06 1.89 4.82 86.31 0.42 2.30 16 29 H 0.06 1.54 6.45 -2.39 -0.02 1.53 16 30 H 0.06 1.51 6.59 -2.39 -0.02 1.50 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.05 2.16 6.11 -2.39 -0.01 2.15 16 33 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 34 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 35 H 0.00 -0.01 7.75 -2.39 -0.02 -0.03 16 36 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.05 1.33 6.60 -2.39 -0.02 1.31 16 38 H 0.07 2.04 8.12 -2.38 -0.02 2.02 16 39 H 0.09 2.15 6.50 -2.39 -0.02 2.14 16 40 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.07 1.22 8.07 -2.39 -0.02 1.20 16 42 H 0.06 1.15 6.30 -2.38 -0.02 1.14 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.12 2.44 7.91 -2.91 -0.02 2.42 16 45 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 46 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 47 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 48 H 0.12 2.18 7.99 -2.91 -0.02 2.15 16 49 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.10 2.35 6.09 -2.38 -0.01 2.34 16 51 H 0.05 1.45 6.46 -2.39 -0.02 1.43 16 52 H 0.07 2.36 6.07 -2.39 -0.01 2.34 16 Total: -1.00 -67.27 392.94 1.20 -66.06 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.86 Total: 18.45 kcal Atomic # 6 Polarization: -39.87 SS G_CDS: 5.22 Total: -34.65 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -6.91 Total: -97.39 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -67.27 1.20 -66.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503160.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.126 kcal (2) G-P(sol) polarization free energy of solvation -67.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds