Wall clock time and date at job start Tue Mar 31 2020 11:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46720 * 2 1 4 4 C 1.53000 * 109.47315 * 240.00222 * 2 1 3 5 5 C 1.53000 * 109.47170 * 174.99976 * 4 2 1 6 6 C 1.50690 * 109.47181 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00343 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00302 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99449 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00410 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46977 * 60.00266 * 10 8 6 12 12 H 1.48502 * 109.47218 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47162 * 300.00224 * 10 8 6 14 14 N 1.46896 * 109.46828 * 120.00082 * 2 1 3 15 15 C 1.46955 * 111.00317 * 300.00127 * 14 2 1 16 16 C 1.53047 * 109.36936 * 183.19041 * 15 14 2 17 17 N 1.46956 * 109.36353 * 301.60019 * 16 15 14 18 18 C 1.46903 * 111.00046 * 183.18530 * 17 16 15 19 19 H 1.09002 * 109.47271 * 299.99843 * 18 17 16 20 20 C 1.53000 * 109.47124 * 60.00099 * 18 17 16 21 21 C 1.50706 * 109.46823 * 180.02562 * 18 17 16 22 22 C 1.38237 * 119.99744 * 140.00532 * 21 18 17 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 18 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00223 * 320.01742 * 21 18 17 27 27 C 1.46960 * 110.88316 * 59.31967 * 17 16 15 28 28 C 1.46956 * 111.00141 * 63.80299 * 14 2 1 29 29 H 1.08999 * 109.47013 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47369 * 299.99593 * 1 2 3 31 31 H 1.09004 * 109.46865 * 60.00301 * 1 2 3 32 32 H 1.08999 * 109.47044 * 295.00151 * 4 2 1 33 33 H 1.09003 * 109.47060 * 54.99919 * 4 2 1 34 34 H 1.08999 * 109.47069 * 300.00541 * 5 4 2 35 35 H 1.09009 * 109.46848 * 59.99719 * 5 4 2 36 36 H 0.97003 * 119.99707 * 179.97438 * 9 8 6 37 37 H 1.08996 * 109.48724 * 63.22246 * 15 14 2 38 38 H 1.08997 * 109.50935 * 303.16679 * 15 14 2 39 39 H 1.08994 * 109.49450 * 181.63299 * 16 15 14 40 40 H 1.08998 * 109.50826 * 61.57279 * 16 15 14 41 41 H 1.09002 * 109.47256 * 59.99735 * 20 18 17 42 42 H 1.09001 * 109.46919 * 179.97438 * 20 18 17 43 43 H 1.09001 * 109.46694 * 300.00063 * 20 18 17 44 44 H 1.08005 * 120.00088 * 359.97438 * 22 21 18 45 45 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 46 46 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 47 47 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 48 48 H 1.07998 * 119.99975 * 0.02562 * 26 21 18 49 49 H 1.08999 * 109.48607 * 60.64122 * 27 17 16 50 50 H 1.08998 * 109.49094 * 180.71322 * 27 17 16 51 51 H 1.09000 * 109.49005 * 296.77465 * 28 14 2 52 52 H 1.09004 * 109.48984 * 56.82259 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 6 4.0673 -1.3240 -2.5437 7 1 3.3690 -1.8052 -3.2125 8 6 5.4186 -1.3603 -2.8155 9 7 6.2689 -0.7740 -2.0013 10 14 6.0414 -2.2420 -4.3399 11 1 5.4489 -1.6175 -5.5498 12 1 7.5214 -2.1371 -4.4025 13 1 5.6493 -3.6730 -4.2790 14 7 2.0196 -0.6925 1.1994 15 6 1.5484 -0.0262 2.4215 16 6 2.1434 -0.7286 3.6442 17 7 1.7479 -2.1439 3.6336 18 6 2.2375 -2.8364 4.8330 19 1 3.3254 -2.7778 4.8677 20 6 1.6509 -2.1726 6.0804 21 6 1.8141 -4.2820 4.7864 22 6 2.6863 -5.2714 5.2003 23 6 2.2981 -6.5974 5.1570 24 6 1.0373 -6.9340 4.7009 25 6 0.1669 -5.9450 4.2825 26 6 0.5536 -4.6187 4.3295 27 6 2.2191 -2.8103 2.4115 28 6 1.6241 -2.1078 1.1887 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.7517 -1.7714 -1.2056 33 1 1.6054 -0.2616 -2.1370 34 1 3.8532 0.4371 -1.3572 35 1 3.9995 -1.0727 -0.4258 36 1 7.2196 -0.7998 -2.1923 37 1 0.4605 -0.0766 2.4668 38 1 1.8640 1.0170 2.4122 39 1 1.7722 -0.2542 4.5526 40 1 3.2304 -0.6546 3.6134 41 1 0.5630 -2.2312 6.0457 42 1 2.0139 -2.6867 6.9704 43 1 1.9576 -1.1271 6.1138 44 1 3.6714 -5.0084 5.5566 45 1 2.9797 -7.3704 5.4800 46 1 0.7339 -7.9700 4.6676 47 1 -0.8166 -6.2082 3.9220 48 1 -0.1276 -3.8458 4.0056 49 1 3.3070 -2.7598 2.3662 50 1 1.9032 -3.8535 2.4211 51 1 0.5371 -2.1819 1.2200 52 1 1.9950 -2.5822 0.2801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172503165.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:51 Heat of formation + Delta-G solvation = 29.865728 kcal Electronic energy + Delta-G solvation = -27423.502506 eV Core-core repulsion = 24001.429618 eV Total energy + Delta-G solvation = -3422.072888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.12327 -38.89480 -36.75895 -33.75265 -32.60763 -31.13999 -30.86457 -30.70870 -29.12828 -28.78323 -25.74830 -25.05883 -23.55551 -22.98852 -22.47772 -21.45073 -20.50779 -19.86276 -18.64826 -16.97268 -16.42208 -16.09145 -15.52671 -15.39230 -14.70083 -14.56962 -14.38960 -14.36671 -14.18882 -14.07135 -13.44086 -13.35469 -13.20579 -12.94309 -12.61530 -12.38689 -12.27340 -12.13754 -11.84690 -11.61845 -11.50146 -11.41831 -11.32590 -11.10493 -11.03969 -10.86985 -10.78084 -10.54479 -10.44734 -10.27250 -10.00152 -9.56189 -9.17945 -8.96862 -8.88357 -8.74743 -8.28651 -8.22792 -7.69503 -5.88283 -3.89873 1.27050 1.35388 3.38359 3.42678 3.45115 3.68066 3.92166 4.31733 4.53960 4.55187 4.83708 4.92615 5.04318 5.07726 5.15724 5.18418 5.28984 5.40177 5.46816 5.48095 5.49379 5.52552 5.54409 5.62281 5.63368 5.66550 5.72817 5.78174 5.83897 5.92627 5.95536 6.01209 6.07997 6.14900 6.18232 6.25478 6.31574 6.38201 6.39893 6.45639 6.46194 6.54616 6.70320 6.91568 6.93263 7.13387 7.14344 7.29111 7.59953 7.64255 7.85036 8.06789 8.21663 8.56983 9.18955 9.72851 11.22554 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.003444 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.443236 B = 8127.427305 C = 9245.699316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.082 3.918 3 H 0.077 0.923 4 C -0.106 4.106 5 C 0.031 3.969 6 C -0.520 4.520 7 H 0.050 0.950 8 C 0.058 3.942 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.519 5.519 15 C 0.057 3.943 16 C 0.056 3.944 17 N -0.531 5.531 18 C 0.119 3.881 19 H 0.049 0.951 20 C -0.140 4.140 21 C -0.075 4.075 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.126 4.126 26 C -0.092 4.092 27 C 0.057 3.943 28 C 0.056 3.944 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.009 0.991 35 H 0.029 0.971 36 H 0.258 0.742 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.119 0.881 48 H 0.130 0.870 49 H 0.044 0.956 50 H 0.077 0.923 51 H 0.035 0.965 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.425 -5.789 17.711 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.026 4.026 3 H 0.095 0.905 4 C -0.144 4.144 5 C -0.006 4.006 6 C -0.559 4.559 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.243 5.243 15 C -0.072 4.072 16 C -0.072 4.072 17 N -0.257 5.257 18 C 0.010 3.990 19 H 0.066 0.934 20 C -0.197 4.197 21 C -0.075 4.075 22 C -0.135 4.135 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.144 4.144 26 C -0.110 4.110 27 C -0.071 4.071 28 C -0.072 4.072 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.028 0.972 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.148 0.852 49 H 0.062 0.938 50 H 0.095 0.905 51 H 0.053 0.947 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.218 -5.738 17.733 22.286 hybrid contribution 0.500 -0.530 -0.928 1.180 sum -11.717 -6.268 16.804 21.424 Atomic orbital electron populations 1.22487 0.98891 1.01587 1.01273 1.21841 0.91079 0.98656 0.91009 0.90506 1.21788 1.00818 0.98359 0.93392 1.18981 0.88033 0.96721 0.96863 1.21305 0.91845 1.34170 1.08555 0.93183 1.24990 0.97129 0.95738 0.96450 1.69976 1.02208 1.44210 1.36948 0.86756 0.77602 0.80293 0.83895 1.20391 1.21394 1.20387 1.62302 1.58985 1.01814 1.01218 1.22120 0.97607 0.97795 0.89675 1.22205 0.98901 0.88085 0.98028 1.62250 1.59639 1.02292 1.01479 1.20520 0.97166 0.90044 0.91223 0.93357 1.21856 1.01867 1.00262 0.95721 1.19774 0.94460 0.94351 0.98908 1.21037 0.99292 0.92754 1.00423 1.21071 0.96486 0.96083 1.00444 1.21131 0.94283 0.99215 0.99615 1.21186 0.99705 0.93150 1.00319 1.21070 0.95972 0.96118 0.97845 1.22209 0.98566 0.97766 0.88552 1.22199 0.97590 0.89265 0.98128 0.92801 0.93264 0.92474 0.93221 0.93299 0.97236 0.95217 0.93194 0.94315 0.90782 0.90499 0.93853 0.91725 0.92315 0.92070 0.86360 0.86309 0.86448 0.86295 0.85243 0.93772 0.90481 0.94684 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 8.50 37.16 0.32 -2.30 16 2 C 0.08 1.42 2.43 -67.71 -0.16 1.25 16 3 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 4 C -0.11 -2.20 4.32 -26.73 -0.12 -2.31 16 5 C 0.03 0.82 4.86 -27.89 -0.14 0.68 16 6 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 7 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -27.47 13.29 55.43 0.74 -26.73 16 10 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 N -0.52 -8.71 4.19 -226.49 -0.95 -9.66 16 15 C 0.06 0.78 5.13 -3.77 -0.02 0.76 16 16 C 0.06 0.71 5.32 -3.77 -0.02 0.69 16 17 N -0.53 -6.71 3.92 -227.87 -0.89 -7.60 16 18 C 0.12 1.33 2.27 -68.86 -0.16 1.17 16 19 H 0.05 0.58 8.00 -51.93 -0.42 0.17 16 20 C -0.14 -1.30 8.94 37.16 0.33 -0.96 16 21 C -0.07 -0.84 3.73 -104.62 -0.39 -1.23 16 22 C -0.12 -1.25 9.67 -39.58 -0.38 -1.63 16 23 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 24 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 25 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 26 C -0.09 -1.02 8.11 -39.58 -0.32 -1.34 16 27 C 0.06 0.84 5.20 -3.76 -0.02 0.82 16 28 C 0.06 0.90 4.84 -3.76 -0.02 0.88 16 29 H 0.05 0.77 6.56 -51.93 -0.34 0.43 16 30 H 0.05 0.64 6.48 -51.93 -0.34 0.30 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 1.02 6.00 -51.93 -0.31 0.71 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.03 0.84 7.75 -51.92 -0.40 0.44 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.04 0.52 6.48 -51.93 -0.34 0.18 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 0.82 6.14 -51.93 -0.32 0.50 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.53 6.34 -51.93 -0.33 0.20 16 44 H 0.12 1.12 8.04 -52.48 -0.42 0.70 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 46 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 47 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 48 H 0.13 1.46 7.72 -52.49 -0.41 1.06 16 49 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.08 1.11 6.05 -51.93 -0.31 0.80 16 51 H 0.04 0.54 6.57 -51.93 -0.34 0.19 16 52 H 0.09 1.67 5.95 -51.93 -0.31 1.36 16 LS Contribution 391.85 15.07 5.91 5.91 Total: -1.00 -30.68 391.85 -12.12 -42.79 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -9.20 Total: 0.34 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -2.70 Total: -22.13 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -1.11 Total: -43.99 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.68 -12.12 -42.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503165.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.659 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds