Wall clock time and date at job start Tue Mar 31 2020 11:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46720 * 2 1 4 4 C 1.53000 * 109.47315 * 240.00222 * 2 1 3 5 5 C 1.53000 * 109.47170 * 174.99976 * 4 2 1 6 6 C 1.50690 * 109.47181 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00343 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00302 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99449 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00410 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46977 * 60.00266 * 10 8 6 12 12 H 1.48502 * 109.47218 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47162 * 300.00224 * 10 8 6 14 14 N 1.46896 * 109.46828 * 120.00082 * 2 1 3 15 15 C 1.46955 * 111.00317 * 300.00127 * 14 2 1 16 16 C 1.53047 * 109.36936 * 183.19041 * 15 14 2 17 17 N 1.46956 * 109.36353 * 301.60019 * 16 15 14 18 18 C 1.46903 * 111.00046 * 183.18530 * 17 16 15 19 19 H 1.09002 * 109.47271 * 299.99843 * 18 17 16 20 20 C 1.53000 * 109.47124 * 60.00099 * 18 17 16 21 21 C 1.50706 * 109.46823 * 180.02562 * 18 17 16 22 22 C 1.38237 * 119.99744 * 140.00532 * 21 18 17 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 18 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00223 * 320.01742 * 21 18 17 27 27 C 1.46960 * 110.88316 * 59.31967 * 17 16 15 28 28 C 1.46956 * 111.00141 * 63.80299 * 14 2 1 29 29 H 1.08999 * 109.47013 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47369 * 299.99593 * 1 2 3 31 31 H 1.09004 * 109.46865 * 60.00301 * 1 2 3 32 32 H 1.08999 * 109.47044 * 295.00151 * 4 2 1 33 33 H 1.09003 * 109.47060 * 54.99919 * 4 2 1 34 34 H 1.08999 * 109.47069 * 300.00541 * 5 4 2 35 35 H 1.09009 * 109.46848 * 59.99719 * 5 4 2 36 36 H 0.97003 * 119.99707 * 179.97438 * 9 8 6 37 37 H 1.08996 * 109.48724 * 63.22246 * 15 14 2 38 38 H 1.08997 * 109.50935 * 303.16679 * 15 14 2 39 39 H 1.08994 * 109.49450 * 181.63299 * 16 15 14 40 40 H 1.08998 * 109.50826 * 61.57279 * 16 15 14 41 41 H 1.09002 * 109.47256 * 59.99735 * 20 18 17 42 42 H 1.09001 * 109.46919 * 179.97438 * 20 18 17 43 43 H 1.09001 * 109.46694 * 300.00063 * 20 18 17 44 44 H 1.08005 * 120.00088 * 359.97438 * 22 21 18 45 45 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 46 46 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 47 47 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 48 48 H 1.07998 * 119.99975 * 0.02562 * 26 21 18 49 49 H 1.08999 * 109.48607 * 60.64122 * 27 17 16 50 50 H 1.08998 * 109.49094 * 180.71322 * 27 17 16 51 51 H 1.09000 * 109.49005 * 296.77465 * 28 14 2 52 52 H 1.09004 * 109.48984 * 56.82259 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 6 4.0673 -1.3240 -2.5437 7 1 3.3690 -1.8052 -3.2125 8 6 5.4186 -1.3603 -2.8155 9 7 6.2689 -0.7740 -2.0013 10 14 6.0414 -2.2420 -4.3399 11 1 5.4489 -1.6175 -5.5498 12 1 7.5214 -2.1371 -4.4025 13 1 5.6493 -3.6730 -4.2790 14 7 2.0196 -0.6925 1.1994 15 6 1.5484 -0.0262 2.4215 16 6 2.1434 -0.7286 3.6442 17 7 1.7479 -2.1439 3.6336 18 6 2.2375 -2.8364 4.8330 19 1 3.3254 -2.7778 4.8677 20 6 1.6509 -2.1726 6.0804 21 6 1.8141 -4.2820 4.7864 22 6 2.6863 -5.2714 5.2003 23 6 2.2981 -6.5974 5.1570 24 6 1.0373 -6.9340 4.7009 25 6 0.1669 -5.9450 4.2825 26 6 0.5536 -4.6187 4.3295 27 6 2.2191 -2.8103 2.4115 28 6 1.6241 -2.1078 1.1887 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.7517 -1.7714 -1.2056 33 1 1.6054 -0.2616 -2.1370 34 1 3.8532 0.4371 -1.3572 35 1 3.9995 -1.0727 -0.4258 36 1 7.2196 -0.7998 -2.1923 37 1 0.4605 -0.0766 2.4668 38 1 1.8640 1.0170 2.4122 39 1 1.7722 -0.2542 4.5526 40 1 3.2304 -0.6546 3.6134 41 1 0.5630 -2.2312 6.0457 42 1 2.0139 -2.6867 6.9704 43 1 1.9576 -1.1271 6.1138 44 1 3.6714 -5.0084 5.5566 45 1 2.9797 -7.3704 5.4800 46 1 0.7339 -7.9700 4.6676 47 1 -0.8166 -6.2082 3.9220 48 1 -0.1276 -3.8458 4.0056 49 1 3.3070 -2.7598 2.3662 50 1 1.9032 -3.8535 2.4211 51 1 0.5371 -2.1819 1.2200 52 1 1.9950 -2.5822 0.2801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172503165.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:50 Heat of formation + Delta-G solvation = 13.241620 kcal Electronic energy + Delta-G solvation = -27424.223381 eV Core-core repulsion = 24001.429618 eV Total energy + Delta-G solvation = -3422.793764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.13795 -39.94378 -37.89671 -35.50725 -34.15757 -32.39432 -32.01710 -31.69404 -30.54380 -29.78381 -27.14894 -26.68422 -24.69114 -23.96598 -23.36547 -23.16640 -21.71794 -21.01707 -19.97113 -18.38012 -17.81544 -17.50011 -16.58705 -16.50584 -16.33966 -15.83264 -15.65267 -15.56652 -15.22265 -15.02570 -14.64681 -14.44536 -14.29469 -14.16229 -14.06924 -13.78333 -13.30481 -13.25683 -13.12291 -13.09815 -12.85215 -12.70923 -12.62311 -12.41269 -12.37027 -12.31001 -12.01189 -11.84683 -11.74234 -11.52149 -11.46560 -11.31948 -11.16980 -10.88616 -10.49340 -9.76000 -9.55526 -9.38924 -8.97035 -8.14521 -6.25307 0.47658 0.56168 1.38566 1.41837 1.49484 2.42627 2.78469 2.98764 3.05746 3.17816 3.69129 3.91963 3.98277 4.04414 4.19353 4.21132 4.23757 4.32229 4.33347 4.35578 4.37610 4.45398 4.50290 4.54814 4.58423 4.68870 4.74580 4.75482 4.83005 4.83256 4.87310 4.95245 4.98753 5.01818 5.05553 5.13538 5.15524 5.18166 5.23598 5.31948 5.33651 5.46139 5.58392 5.60537 5.67810 5.69211 5.87292 5.99980 6.02324 6.10339 6.18083 6.30559 6.35277 6.38594 6.94308 7.42945 8.96525 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.003444 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.443236 B = 8127.427305 C = 9245.699316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.087 3.913 3 H 0.067 0.933 4 C -0.094 4.094 5 C 0.043 3.957 6 C -0.544 4.544 7 H 0.055 0.945 8 C 0.001 3.999 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.268 1.268 14 N -0.545 5.545 15 C 0.059 3.941 16 C 0.058 3.942 17 N -0.522 5.522 18 C 0.118 3.882 19 H 0.036 0.964 20 C -0.132 4.132 21 C -0.087 4.087 22 C -0.131 4.131 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.131 4.131 26 C -0.102 4.102 27 C 0.069 3.931 28 C 0.064 3.936 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.051 0.949 34 H -0.022 1.022 35 H -0.001 1.001 36 H 0.261 0.739 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.021 0.979 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.123 0.877 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.136 0.864 48 H 0.126 0.874 49 H 0.011 0.989 50 H 0.081 0.919 51 H 0.049 0.951 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.150 -6.683 18.100 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.132 4.132 5 C 0.006 3.994 6 C -0.582 4.582 7 H 0.073 0.927 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.191 1.191 12 H -0.209 1.209 13 H -0.193 1.193 14 N -0.270 5.270 15 C -0.069 4.069 16 C -0.070 4.070 17 N -0.247 5.247 18 C 0.010 3.990 19 H 0.054 0.946 20 C -0.190 4.190 21 C -0.087 4.087 22 C -0.150 4.150 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.149 4.149 26 C -0.120 4.120 27 C -0.060 4.060 28 C -0.064 4.064 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.070 0.930 34 H -0.004 1.004 35 H 0.017 0.983 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.039 0.961 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.141 0.859 45 H 0.155 0.845 46 H 0.157 0.843 47 H 0.154 0.846 48 H 0.144 0.856 49 H 0.029 0.971 50 H 0.099 0.901 51 H 0.067 0.933 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.963 -6.631 18.131 23.826 hybrid contribution 1.077 -0.268 -1.008 1.499 sum -12.885 -6.899 17.123 22.513 Atomic orbital electron populations 1.22332 0.95824 1.02112 1.02644 1.21651 0.93367 0.97401 0.89659 0.91474 1.21594 0.96779 0.99134 0.95687 1.18769 0.91847 0.93950 0.94826 1.21766 0.92500 1.34448 1.09449 0.92658 1.25938 0.97389 0.96452 0.99914 1.70125 1.02561 1.45539 1.39035 0.85594 0.77031 0.79260 0.79719 1.19141 1.20896 1.19337 1.62229 1.60258 1.02312 1.02212 1.22176 0.98372 0.97829 0.88537 1.22240 0.97613 0.88265 0.98838 1.62292 1.59039 1.02228 1.01104 1.20581 0.96553 0.90521 0.91304 0.94627 1.21807 1.01787 1.00513 0.94855 1.19828 0.94889 0.94311 0.99677 1.21226 0.99609 0.93276 1.00863 1.21364 0.97085 0.96181 1.00044 1.21450 0.94044 1.00324 0.98875 1.21451 1.00638 0.92854 0.99989 1.21108 0.95878 0.96662 0.98392 1.22009 0.96339 0.98155 0.89452 1.22048 0.98149 0.88876 0.97307 0.92614 0.91370 0.91627 0.93074 0.92983 1.00371 0.98266 0.93059 0.92894 0.90344 0.87629 0.96063 0.91546 0.91349 0.91369 0.85868 0.84491 0.84269 0.84578 0.85563 0.97084 0.90094 0.93277 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.51 8.50 71.98 0.61 -3.90 16 2 C 0.09 3.01 2.43 44.92 0.11 3.12 16 3 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 4 C -0.09 -3.99 4.32 30.59 0.13 -3.86 16 5 C 0.04 2.37 4.86 29.84 0.15 2.52 16 6 C -0.54 -32.10 9.11 25.60 0.23 -31.86 16 7 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 8 C 0.00 0.03 5.46 84.65 0.46 0.49 16 9 N -0.93 -58.89 13.29 21.45 0.28 -58.61 16 10 Si 0.96 45.68 29.54 68.60 2.03 47.71 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 14 N -0.55 -18.56 4.19 -870.49 -3.65 -22.20 16 15 C 0.06 1.57 5.13 86.31 0.44 2.01 16 16 C 0.06 1.44 5.32 86.31 0.46 1.90 16 17 N -0.52 -12.98 3.92 -874.85 -3.43 -16.40 16 18 C 0.12 2.61 2.27 44.17 0.10 2.71 16 19 H 0.04 0.88 8.00 -2.39 -0.02 0.86 16 20 C -0.13 -2.25 8.94 71.98 0.64 -1.61 16 21 C -0.09 -1.91 3.73 -19.86 -0.07 -1.99 16 22 C -0.13 -2.75 9.67 22.27 0.22 -2.54 16 23 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 24 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 25 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 26 C -0.10 -2.17 8.11 22.27 0.18 -1.99 16 27 C 0.07 2.10 5.20 86.31 0.45 2.55 16 28 C 0.06 2.09 4.84 86.31 0.42 2.51 16 29 H 0.05 1.46 6.56 -2.39 -0.02 1.45 16 30 H 0.07 1.57 6.48 -2.39 -0.02 1.55 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 32 H 0.05 2.14 6.00 -2.39 -0.01 2.12 16 33 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 34 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 35 H 0.00 -0.07 7.75 -2.38 -0.02 -0.08 16 36 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.05 1.29 6.48 -2.39 -0.02 1.27 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.11 2.02 6.14 -2.39 -0.01 2.01 16 40 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.07 1.05 6.34 -2.39 -0.02 1.04 16 44 H 0.12 2.34 8.04 -2.91 -0.02 2.32 16 45 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 46 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 47 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 48 H 0.13 2.71 7.72 -2.91 -0.02 2.69 16 49 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 50 H 0.08 2.38 6.05 -2.39 -0.01 2.37 16 51 H 0.05 1.45 6.57 -2.39 -0.02 1.44 16 52 H 0.06 2.37 5.95 -2.39 -0.01 2.35 16 Total: -1.00 -67.88 391.85 1.30 -66.58 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.86 Total: 19.31 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 5.20 Total: -36.38 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -6.79 Total: -97.22 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -67.88 1.30 -66.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503165.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.818 kcal (2) G-P(sol) polarization free energy of solvation -67.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds