Wall clock time and date at job start Tue Mar 31 2020 10:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 120.00354 * 2 1 4 4 C 1.38236 * 120.00332 * 179.97438 * 3 2 1 5 5 C 1.38232 * 119.99687 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99833 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.47033 * 89.99789 * 6 5 4 8 8 C 1.46957 * 110.99620 * 170.00129 * 7 6 5 9 9 C 1.53053 * 109.36244 * 183.18959 * 8 7 6 10 10 N 1.46950 * 109.36459 * 301.59998 * 9 8 7 11 11 C 1.46902 * 110.99671 * 183.18827 * 10 9 8 12 12 H 1.08996 * 109.47604 * 294.19512 * 11 10 9 13 13 C 1.53000 * 109.47414 * 54.20235 * 11 10 9 14 14 C 1.53007 * 109.46989 * 174.20112 * 11 10 9 15 15 C 1.52992 * 109.47397 * 176.21565 * 14 11 10 16 16 C 1.50699 * 109.47539 * 185.18903 * 15 14 11 17 17 H 1.08005 * 119.99722 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00262 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00151 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99996 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47350 * 89.99944 * 20 18 16 22 22 H 1.48500 * 109.46917 * 209.99765 * 20 18 16 23 23 H 1.48502 * 109.47112 * 329.99325 * 20 18 16 24 24 C 1.46957 * 110.88236 * 59.32178 * 10 9 8 25 25 C 1.46950 * 111.00200 * 293.80205 * 7 6 5 26 26 C 1.38231 * 120.00325 * 0.25472 * 5 4 3 27 27 C 1.38236 * 119.99987 * 359.48897 * 26 5 4 28 28 H 1.09001 * 109.46450 * 89.99947 * 1 2 3 29 29 H 1.08991 * 109.47072 * 209.99976 * 1 2 3 30 30 H 1.08995 * 109.46975 * 330.00570 * 1 2 3 31 31 H 1.08005 * 119.99973 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.00152 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.46804 * 330.00311 * 6 5 4 34 34 H 1.09003 * 109.46949 * 210.00392 * 6 5 4 35 35 H 1.08995 * 109.49344 * 63.22172 * 8 7 6 36 36 H 1.09000 * 109.50754 * 303.16488 * 8 7 6 37 37 H 1.08998 * 109.48743 * 181.62732 * 9 8 7 38 38 H 1.09005 * 109.50837 * 61.57854 * 9 8 7 39 39 H 1.09002 * 109.46888 * 59.99876 * 13 11 10 40 40 H 1.09001 * 109.46978 * 179.97438 * 13 11 10 41 41 H 1.08996 * 109.46773 * 299.99669 * 13 11 10 42 42 H 1.08995 * 109.46999 * 56.21010 * 14 11 10 43 43 H 1.09010 * 109.46928 * 296.21428 * 14 11 10 44 44 H 1.09006 * 109.46947 * 305.19118 * 15 14 11 45 45 H 1.09003 * 109.47155 * 65.18515 * 15 14 11 46 46 H 0.97003 * 120.00131 * 180.02562 * 19 18 16 47 47 H 1.09000 * 109.48701 * 60.64482 * 24 10 9 48 48 H 1.09002 * 109.48820 * 180.71449 * 24 10 9 49 49 H 1.09002 * 109.48924 * 296.77599 * 25 7 6 50 50 H 1.08998 * 109.49408 * 56.84389 * 25 7 6 51 51 H 1.08003 * 120.00431 * 179.72681 * 26 5 4 52 52 H 1.07999 * 120.00600 * 180.25025 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7788 -0.0001 0.0005 7 7 6.2684 -0.0001 1.3855 8 6 7.7178 -0.2383 1.4316 9 6 8.1741 -0.3100 2.8908 10 7 7.8277 0.9453 3.5718 11 6 8.3174 0.9452 4.9568 12 1 7.7902 0.1816 5.5286 13 6 9.8177 0.6453 4.9673 14 6 8.0672 2.3171 5.5863 15 6 8.4905 2.2887 7.0562 16 6 8.1271 3.5974 7.7091 17 1 7.6430 4.3722 7.1330 18 6 8.4136 3.8061 9.0415 19 7 9.0035 2.8629 9.7428 20 14 7.9625 5.4282 9.8509 21 1 6.5924 5.3352 10.4161 22 1 8.9282 5.7234 10.9397 23 1 8.0084 6.5153 8.8403 24 6 6.3783 1.1835 3.5257 25 6 5.9220 1.2552 2.0666 26 6 3.5806 -1.1972 -0.0053 27 6 2.1982 -1.1972 -0.0005 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6583 2.1325 0.0004 32 1 4.1206 2.1324 0.0010 33 1 6.1421 0.8899 -0.5133 34 1 6.1420 -0.8901 -0.5134 35 1 8.2367 0.5772 0.9280 36 1 7.9481 -1.1793 0.9320 37 1 9.2534 -0.4578 2.9274 38 1 7.6760 -1.1427 3.3875 39 1 10.3449 1.4091 4.3956 40 1 10.1811 0.6457 5.9950 41 1 9.9960 -0.3320 4.5189 42 1 7.0068 2.5601 5.5182 43 1 8.6477 3.0718 5.0555 44 1 7.9775 1.4734 7.5664 45 1 9.5680 2.1370 7.1212 46 1 9.2048 3.0096 10.6803 47 1 5.8595 0.3678 4.0294 48 1 6.1484 2.1247 4.0253 49 1 6.4205 2.0878 1.5702 50 1 4.8427 1.4030 2.0299 51 1 4.1205 -2.1325 -0.0098 52 1 1.6581 -2.1325 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172503396.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:24 Heat of formation + Delta-G solvation = 18.853194 kcal Electronic energy + Delta-G solvation = -26353.357894 eV Core-core repulsion = 22930.807467 eV Total energy + Delta-G solvation = -3422.550428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.01974 -39.03259 -36.59985 -34.02225 -32.97073 -31.61950 -31.25427 -30.89160 -29.16397 -28.07200 -26.13633 -25.11966 -23.45645 -23.28341 -22.73432 -21.49376 -20.80461 -19.76197 -19.17329 -16.72478 -16.32613 -15.99348 -15.79097 -15.39330 -14.85058 -14.70512 -14.62555 -14.43812 -14.21535 -14.10553 -13.91359 -13.62704 -13.46812 -12.79809 -12.67050 -12.56213 -12.27971 -12.11570 -12.03949 -12.00539 -11.60320 -11.37465 -11.23277 -11.16324 -11.13268 -11.03150 -10.88785 -10.67215 -10.61680 -10.40148 -10.02499 -9.54991 -9.25624 -9.07435 -8.97598 -8.76123 -8.39035 -8.30157 -7.95968 -5.96418 -3.98041 1.11736 1.24078 3.34010 3.40103 3.43783 3.44934 4.01314 4.16789 4.49621 4.52894 4.59374 4.73238 4.83023 4.90231 4.96662 5.14803 5.19695 5.26659 5.29641 5.31595 5.36844 5.39337 5.48108 5.50530 5.54083 5.56097 5.58815 5.61455 5.75712 5.85786 5.89655 5.90889 5.97083 6.00708 6.11635 6.15134 6.22864 6.36228 6.40483 6.44880 6.45939 6.67693 6.76213 6.80304 6.82621 6.95496 6.97417 7.18363 7.44944 7.52262 7.73155 7.89288 8.04482 8.48301 9.09152 9.65611 11.14944 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.002524 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.549961 B =11091.386576 C =12496.963930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.121 4.121 4 C -0.109 4.109 5 C -0.080 4.080 6 C 0.094 3.906 7 N -0.534 5.534 8 C 0.060 3.940 9 C 0.053 3.947 10 N -0.536 5.536 11 C 0.082 3.918 12 H 0.035 0.965 13 C -0.144 4.144 14 C -0.101 4.101 15 C 0.023 3.977 16 C -0.517 4.517 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.055 3.945 25 C 0.057 3.943 26 C -0.095 4.095 27 C -0.123 4.123 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.037 0.963 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.012 0.988 45 H 0.019 0.981 46 H 0.260 0.740 47 H 0.038 0.962 48 H 0.087 0.913 49 H 0.040 0.960 50 H 0.079 0.921 51 H 0.121 0.879 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.879 -8.943 -23.428 27.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C -0.139 4.139 4 C -0.128 4.128 5 C -0.081 4.081 6 C -0.033 4.033 7 N -0.259 5.259 8 C -0.068 4.068 9 C -0.075 4.075 10 N -0.261 5.261 11 C -0.025 4.025 12 H 0.053 0.947 13 C -0.201 4.201 14 C -0.139 4.139 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.073 4.073 25 C -0.071 4.071 26 C -0.114 4.114 27 C -0.141 4.141 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.030 0.970 45 H 0.038 0.962 46 H 0.069 0.931 47 H 0.056 0.944 48 H 0.105 0.895 49 H 0.058 0.942 50 H 0.097 0.903 51 H 0.139 0.861 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.785 -8.981 -23.247 27.155 hybrid contribution -0.240 0.853 0.625 1.084 sum -11.025 -8.129 -22.623 26.446 Atomic orbital electron populations 1.20789 0.91368 1.02814 1.02139 1.19922 0.96000 0.93283 0.99782 1.20997 0.94100 0.97525 1.01295 1.21066 0.94219 0.97583 0.99901 1.19717 0.95020 0.93217 1.00100 1.21010 0.91031 1.01418 0.89875 1.62186 1.13986 1.35429 1.14310 1.22167 0.86958 1.00556 0.97146 1.22190 1.00690 0.91425 0.93237 1.62265 1.13252 1.33304 1.17302 1.21777 0.95376 0.99154 0.86200 0.94663 1.21922 0.95374 1.00092 1.02713 1.21713 1.00235 0.93311 0.98612 1.19123 0.96748 0.96817 0.88775 1.21263 1.38662 1.00654 0.94990 0.92791 1.25017 0.95327 0.96644 0.97511 1.69964 1.42298 1.33010 1.08317 0.86621 0.78181 0.84226 0.79139 1.20725 1.21263 1.19894 1.22176 0.88056 1.01823 0.95250 1.22255 1.00539 0.89764 0.94527 1.20980 0.93886 0.97610 0.98891 1.21018 0.94212 0.97438 1.01389 0.91334 0.91595 0.91555 0.86190 0.86265 0.94001 0.90111 0.94064 0.90726 0.89912 0.94486 0.92310 0.91104 0.93791 0.93353 0.92794 0.96956 0.96239 0.93085 0.94413 0.89459 0.94167 0.90252 0.86090 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.09 -0.81 5.88 -104.62 -0.62 -1.42 16 3 C -0.12 -1.12 9.70 -39.58 -0.38 -1.51 16 4 C -0.11 -1.07 7.92 -39.58 -0.31 -1.38 16 5 C -0.08 -0.81 4.89 -104.62 -0.51 -1.32 16 6 C 0.09 0.91 5.12 -4.97 -0.03 0.89 16 7 N -0.53 -6.24 4.70 -235.91 -1.11 -7.35 16 8 C 0.06 0.67 5.61 -3.77 -0.02 0.65 16 9 C 0.05 0.70 5.18 -3.77 -0.02 0.68 16 10 N -0.54 -8.36 4.58 -226.48 -1.04 -9.40 16 11 C 0.08 1.47 2.16 -67.71 -0.15 1.33 16 12 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 13 C -0.14 -2.39 8.51 37.16 0.32 -2.07 16 14 C -0.10 -2.14 4.57 -26.73 -0.12 -2.26 16 15 C 0.02 0.59 4.57 -27.89 -0.13 0.47 16 16 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 17 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 20 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.06 0.83 5.36 -3.77 -0.02 0.81 16 25 C 0.06 0.72 5.25 -3.77 -0.02 0.70 16 26 C -0.10 -0.92 9.70 -39.58 -0.38 -1.30 16 27 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 32 H 0.12 1.06 7.99 -52.49 -0.42 0.64 16 33 H 0.04 0.40 8.06 -51.93 -0.42 -0.02 16 34 H 0.08 0.69 7.97 -51.93 -0.41 0.27 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 37 H 0.08 1.03 6.03 -51.93 -0.31 0.72 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.07 1.29 6.64 -51.93 -0.35 0.95 16 41 H 0.04 0.62 6.26 -51.93 -0.33 0.30 16 42 H 0.05 1.02 6.19 -51.93 -0.32 0.70 16 43 H 0.05 1.16 8.14 -51.92 -0.42 0.74 16 44 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.02 0.53 6.79 -51.93 -0.35 0.18 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 1.39 6.12 -51.93 -0.32 1.07 16 49 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.08 0.98 5.95 -51.93 -0.31 0.67 16 51 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 52 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 397.87 15.07 6.00 6.00 Total: -1.00 -30.81 397.87 -12.67 -43.48 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -9.41 Total: -1.91 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -2.83 Total: -21.28 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: -1.41 Total: -43.21 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.81 -12.67 -43.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503396.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.337 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds