Wall clock time and date at job start Tue Mar 31 2020 10:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 120.00354 * 2 1 4 4 C 1.38236 * 120.00332 * 179.97438 * 3 2 1 5 5 C 1.38232 * 119.99687 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99833 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.47033 * 89.99789 * 6 5 4 8 8 C 1.46957 * 110.99620 * 170.00129 * 7 6 5 9 9 C 1.53053 * 109.36244 * 183.18959 * 8 7 6 10 10 N 1.46950 * 109.36459 * 301.59998 * 9 8 7 11 11 C 1.46902 * 110.99671 * 183.18827 * 10 9 8 12 12 H 1.08996 * 109.47604 * 294.19512 * 11 10 9 13 13 C 1.53000 * 109.47414 * 54.20235 * 11 10 9 14 14 C 1.53007 * 109.46989 * 174.20112 * 11 10 9 15 15 C 1.52992 * 109.47397 * 176.21565 * 14 11 10 16 16 C 1.50699 * 109.47539 * 185.18903 * 15 14 11 17 17 H 1.08005 * 119.99722 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00262 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00151 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99996 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47350 * 89.99944 * 20 18 16 22 22 H 1.48500 * 109.46917 * 209.99765 * 20 18 16 23 23 H 1.48502 * 109.47112 * 329.99325 * 20 18 16 24 24 C 1.46957 * 110.88236 * 59.32178 * 10 9 8 25 25 C 1.46950 * 111.00200 * 293.80205 * 7 6 5 26 26 C 1.38231 * 120.00325 * 0.25472 * 5 4 3 27 27 C 1.38236 * 119.99987 * 359.48897 * 26 5 4 28 28 H 1.09001 * 109.46450 * 89.99947 * 1 2 3 29 29 H 1.08991 * 109.47072 * 209.99976 * 1 2 3 30 30 H 1.08995 * 109.46975 * 330.00570 * 1 2 3 31 31 H 1.08005 * 119.99973 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.00152 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.46804 * 330.00311 * 6 5 4 34 34 H 1.09003 * 109.46949 * 210.00392 * 6 5 4 35 35 H 1.08995 * 109.49344 * 63.22172 * 8 7 6 36 36 H 1.09000 * 109.50754 * 303.16488 * 8 7 6 37 37 H 1.08998 * 109.48743 * 181.62732 * 9 8 7 38 38 H 1.09005 * 109.50837 * 61.57854 * 9 8 7 39 39 H 1.09002 * 109.46888 * 59.99876 * 13 11 10 40 40 H 1.09001 * 109.46978 * 179.97438 * 13 11 10 41 41 H 1.08996 * 109.46773 * 299.99669 * 13 11 10 42 42 H 1.08995 * 109.46999 * 56.21010 * 14 11 10 43 43 H 1.09010 * 109.46928 * 296.21428 * 14 11 10 44 44 H 1.09006 * 109.46947 * 305.19118 * 15 14 11 45 45 H 1.09003 * 109.47155 * 65.18515 * 15 14 11 46 46 H 0.97003 * 120.00131 * 180.02562 * 19 18 16 47 47 H 1.09000 * 109.48701 * 60.64482 * 24 10 9 48 48 H 1.09002 * 109.48820 * 180.71449 * 24 10 9 49 49 H 1.09002 * 109.48924 * 296.77599 * 25 7 6 50 50 H 1.08998 * 109.49408 * 56.84389 * 25 7 6 51 51 H 1.08003 * 120.00431 * 179.72681 * 26 5 4 52 52 H 1.07999 * 120.00600 * 180.25025 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7788 -0.0001 0.0005 7 7 6.2684 -0.0001 1.3855 8 6 7.7178 -0.2383 1.4316 9 6 8.1741 -0.3100 2.8908 10 7 7.8277 0.9453 3.5718 11 6 8.3174 0.9452 4.9568 12 1 7.7902 0.1816 5.5286 13 6 9.8177 0.6453 4.9673 14 6 8.0672 2.3171 5.5863 15 6 8.4905 2.2887 7.0562 16 6 8.1271 3.5974 7.7091 17 1 7.6430 4.3722 7.1330 18 6 8.4136 3.8061 9.0415 19 7 9.0035 2.8629 9.7428 20 14 7.9625 5.4282 9.8509 21 1 6.5924 5.3352 10.4161 22 1 8.9282 5.7234 10.9397 23 1 8.0084 6.5153 8.8403 24 6 6.3783 1.1835 3.5257 25 6 5.9220 1.2552 2.0666 26 6 3.5806 -1.1972 -0.0053 27 6 2.1982 -1.1972 -0.0005 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6583 2.1325 0.0004 32 1 4.1206 2.1324 0.0010 33 1 6.1421 0.8899 -0.5133 34 1 6.1420 -0.8901 -0.5134 35 1 8.2367 0.5772 0.9280 36 1 7.9481 -1.1793 0.9320 37 1 9.2534 -0.4578 2.9274 38 1 7.6760 -1.1427 3.3875 39 1 10.3449 1.4091 4.3956 40 1 10.1811 0.6457 5.9950 41 1 9.9960 -0.3320 4.5189 42 1 7.0068 2.5601 5.5182 43 1 8.6477 3.0718 5.0555 44 1 7.9775 1.4734 7.5664 45 1 9.5680 2.1370 7.1212 46 1 9.2048 3.0096 10.6803 47 1 5.8595 0.3678 4.0294 48 1 6.1484 2.1247 4.0253 49 1 6.4205 2.0878 1.5702 50 1 4.8427 1.4030 2.0299 51 1 4.1205 -2.1325 -0.0098 52 1 1.6581 -2.1325 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172503396.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:23 Heat of formation + Delta-G solvation = 1.876711 kcal Electronic energy + Delta-G solvation = -26354.094050 eV Core-core repulsion = 22930.807467 eV Total energy + Delta-G solvation = -3423.286583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.89306 -40.00394 -37.79063 -35.60822 -34.30821 -33.04142 -32.22073 -31.72909 -30.57945 -29.12216 -27.39798 -26.64243 -24.46956 -24.39402 -23.58171 -23.07164 -21.52272 -21.02380 -20.61609 -18.59249 -17.47823 -17.02686 -16.56294 -16.50606 -16.11471 -16.01300 -15.79269 -15.62334 -15.48048 -15.28997 -14.73829 -14.50193 -14.33400 -14.25769 -13.99781 -13.62294 -13.55510 -13.30712 -13.15742 -12.90827 -12.85219 -12.73730 -12.57858 -12.51176 -12.36228 -12.29147 -12.19516 -11.92302 -11.79406 -11.72891 -11.52065 -11.38666 -11.19899 -10.94037 -10.53353 -9.77483 -9.50114 -9.32995 -9.16833 -8.19772 -6.30401 0.42026 0.54436 1.38934 1.40323 1.51560 2.40470 2.69953 2.90787 3.13088 3.18508 3.80557 3.89729 3.94743 3.98053 4.08011 4.09426 4.18157 4.19294 4.25643 4.39613 4.43853 4.47846 4.49297 4.56783 4.61002 4.66637 4.73803 4.76941 4.84070 4.85854 4.88808 4.91845 4.93333 4.96630 4.99805 5.00021 5.03729 5.17248 5.22835 5.23813 5.31105 5.39643 5.51868 5.53590 5.72738 5.74256 5.77226 5.86251 5.98936 6.01839 6.15321 6.20067 6.22720 6.30541 6.86279 7.38361 8.91954 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.002524 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.549961 B =11091.386576 C =12496.963930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.133 4.133 4 C -0.120 4.120 5 C -0.093 4.093 6 C 0.098 3.902 7 N -0.543 5.543 8 C 0.065 3.935 9 C 0.052 3.948 10 N -0.536 5.536 11 C 0.091 3.909 12 H 0.019 0.981 13 C -0.137 4.137 14 C -0.086 4.086 15 C 0.030 3.970 16 C -0.542 4.542 17 H 0.056 0.944 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.963 3.037 21 H -0.273 1.273 22 H -0.280 1.280 23 H -0.264 1.264 24 C 0.056 3.944 25 C 0.069 3.931 26 C -0.105 4.105 27 C -0.132 4.132 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.132 0.868 32 H 0.123 0.877 33 H 0.045 0.955 34 H 0.096 0.904 35 H 0.042 0.958 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.029 0.971 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.051 0.949 44 H -0.016 1.016 45 H 0.001 0.999 46 H 0.263 0.737 47 H 0.024 0.976 48 H 0.073 0.927 49 H 0.039 0.961 50 H 0.082 0.918 51 H 0.130 0.870 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.542 -8.818 -25.051 28.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.138 4.138 5 C -0.094 4.094 6 C -0.028 4.028 7 N -0.267 5.267 8 C -0.063 4.063 9 C -0.076 4.076 10 N -0.261 5.261 11 C -0.017 4.017 12 H 0.037 0.963 13 C -0.194 4.194 14 C -0.124 4.124 15 C -0.007 4.007 16 C -0.580 4.580 17 H 0.075 0.925 18 C -0.198 4.198 19 N -0.573 5.573 20 Si 0.788 3.212 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.188 1.188 24 C -0.073 4.073 25 C -0.059 4.059 26 C -0.123 4.123 27 C -0.150 4.150 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.141 0.859 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.060 0.940 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.002 0.998 45 H 0.019 0.981 46 H 0.072 0.928 47 H 0.042 0.958 48 H 0.091 0.909 49 H 0.057 0.943 50 H 0.100 0.900 51 H 0.148 0.852 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.453 -8.862 -24.895 28.801 hybrid contribution -0.068 0.762 1.114 1.351 sum -11.521 -8.101 -23.782 27.639 Atomic orbital electron populations 1.20825 0.89815 1.03357 1.02989 1.20259 0.97329 0.93182 0.99108 1.21245 0.94188 0.98359 1.01328 1.21217 0.94660 0.97819 1.00152 1.19829 0.95287 0.93489 1.00786 1.21025 0.90847 1.02323 0.88631 1.62174 1.14335 1.34567 1.15673 1.22168 0.86632 1.01896 0.95623 1.22303 1.01385 0.89713 0.94214 1.62246 1.13488 1.34980 1.15418 1.21530 0.96331 0.96402 0.87475 0.96275 1.21837 0.94110 1.01871 1.01579 1.21467 0.99770 0.95488 0.95677 1.18981 0.95155 0.94996 0.91574 1.21688 1.38930 1.01640 0.95761 0.92542 1.25962 0.95027 1.00624 0.98188 1.70094 1.43158 1.35229 1.08773 0.85475 0.78144 0.79467 0.78143 1.19821 1.20584 1.18810 1.22157 0.87709 1.00499 0.96900 1.22074 1.00556 0.90449 0.92837 1.21187 0.94357 0.97926 0.98879 1.21291 0.94306 0.98274 1.01156 0.90256 0.90939 0.91148 0.84999 0.85907 0.93643 0.88554 0.94013 0.88206 0.88779 0.95256 0.91934 0.93420 0.90931 0.93597 0.92999 0.99754 0.98082 0.92792 0.95764 0.90887 0.94276 0.89997 0.85173 0.84695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 71.24 0.71 -0.60 16 2 C -0.10 -1.65 5.88 -19.86 -0.12 -1.77 16 3 C -0.13 -2.34 9.70 22.27 0.22 -2.13 16 4 C -0.12 -2.24 7.92 22.27 0.18 -2.06 16 5 C -0.09 -1.76 4.89 -19.87 -0.10 -1.85 16 6 C 0.10 1.72 5.12 85.56 0.44 2.15 16 7 N -0.54 -11.73 4.70 -900.28 -4.23 -15.96 16 8 C 0.06 1.30 5.61 86.31 0.48 1.78 16 9 C 0.05 1.28 5.18 86.31 0.45 1.73 16 10 N -0.54 -16.44 4.58 -870.46 -3.98 -20.42 16 11 C 0.09 3.29 2.16 44.92 0.10 3.39 16 12 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 13 C -0.14 -4.51 8.51 71.98 0.61 -3.90 16 14 C -0.09 -3.75 4.57 30.59 0.14 -3.61 16 15 C 0.03 1.65 4.57 29.85 0.14 1.79 16 16 C -0.54 -31.75 9.11 25.60 0.23 -31.51 16 17 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 18 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 19 N -0.93 -57.65 13.29 21.44 0.28 -57.36 16 20 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 24 C 0.06 1.68 5.36 86.31 0.46 2.14 16 25 C 0.07 1.69 5.25 86.31 0.45 2.15 16 26 C -0.11 -1.88 9.70 22.27 0.22 -1.67 16 27 C -0.13 -2.23 9.70 22.27 0.22 -2.01 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 30 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 31 H 0.13 1.88 8.06 -2.91 -0.02 1.85 16 32 H 0.12 2.10 7.99 -2.91 -0.02 2.08 16 33 H 0.05 0.77 8.06 -2.39 -0.02 0.75 16 34 H 0.10 1.38 7.97 -2.39 -0.02 1.36 16 35 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 1.55 8.07 -2.39 -0.02 1.53 16 37 H 0.09 2.12 6.03 -2.39 -0.01 2.10 16 38 H 0.03 0.78 8.14 -2.38 -0.02 0.77 16 39 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.05 1.79 6.64 -2.39 -0.02 1.77 16 41 H 0.07 1.96 6.26 -2.39 -0.01 1.94 16 42 H 0.05 1.99 6.19 -2.39 -0.01 1.98 16 43 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 44 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 45 H 0.00 0.05 6.79 -2.39 -0.02 0.03 16 46 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 47 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.07 2.37 6.12 -2.39 -0.01 2.36 16 49 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.08 1.97 5.95 -2.39 -0.01 1.96 16 51 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 52 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -66.65 397.87 0.24 -66.41 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.86 Total: 15.72 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 5.29 Total: -35.55 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -7.93 Total: -93.75 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -66.65 0.24 -66.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503396.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.286 kcal (2) G-P(sol) polarization free energy of solvation -66.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds